Wall clock time and date at job start Tue Mar 31 2020 14:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47357 * 2 1 4 4 C 1.53004 * 109.47550 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.46632 * 60.00006 * 4 3 2 6 6 O 1.42898 * 109.47122 * 300.00472 * 4 3 2 7 7 C 1.53004 * 109.47169 * 179.97438 * 4 3 2 8 8 N 1.46500 * 109.46615 * 185.00315 * 7 4 3 9 9 S 1.65604 * 119.99761 * 165.00497 * 8 7 4 10 10 O 1.42094 * 106.40084 * 178.53625 * 9 8 7 11 11 O 1.42094 * 106.39981 * 311.45514 * 9 8 7 12 12 C 1.76203 * 107.21843 * 64.99596 * 9 8 7 13 13 C 1.38654 * 119.87451 * 269.72677 * 12 9 8 14 14 C 1.38614 * 120.49971 * 179.72355 * 13 12 9 15 15 C 1.37640 * 120.24563 * 0.55520 * 14 13 12 16 16 C 1.40695 * 119.74474 * 359.72089 * 15 14 13 17 17 C 1.41397 * 120.24275 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00131 * 155.26506 * 17 16 15 19 19 C 1.39950 * 119.99994 * 335.26012 * 17 16 15 20 20 N 1.30831 * 119.99802 * 342.23616 * 19 17 16 21 21 Si 1.86800 * 120.00052 * 162.23998 * 19 17 16 22 22 H 1.48494 * 109.46877 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47248 * 119.99846 * 21 19 17 24 24 H 1.48499 * 109.47112 * 239.99606 * 21 19 17 25 25 C 1.37593 * 119.87250 * 90.00094 * 12 9 8 26 26 H 1.08994 * 109.47303 * 59.99889 * 1 2 3 27 27 H 1.08996 * 109.47246 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47196 * 299.99907 * 1 2 3 29 29 H 1.09001 * 109.47196 * 240.00093 * 2 1 3 30 30 H 1.09003 * 109.47171 * 120.00142 * 2 1 3 31 31 H 1.09003 * 109.47282 * 60.00267 * 3 2 1 32 32 H 1.09003 * 109.47096 * 300.00188 * 3 2 1 33 33 H 1.08999 * 109.46914 * 180.02562 * 5 4 3 34 34 H 1.08991 * 109.47197 * 300.00303 * 5 4 3 35 35 H 1.09003 * 109.47148 * 60.00241 * 5 4 3 36 36 H 0.96706 * 113.99733 * 299.99437 * 6 4 3 37 37 H 1.08995 * 109.47354 * 305.00344 * 7 4 3 38 38 H 1.09001 * 109.46620 * 65.00270 * 7 4 3 39 39 H 0.97003 * 120.00505 * 344.99797 * 8 7 4 40 40 H 1.07997 * 119.75191 * 0.02562 * 13 12 9 41 41 H 1.08001 * 119.87981 * 180.25980 * 14 13 12 42 42 H 1.08008 * 120.12537 * 179.75234 * 15 14 13 43 43 H 0.96999 * 119.99800 * 180.02562 * 20 19 17 44 44 H 1.07993 * 120.13181 * 359.97438 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0805 0.7210 -1.2484 6 8 4.0459 0.7689 1.1676 7 6 4.0800 2.8850 0.0000 8 7 5.5401 2.8866 -0.1198 9 16 6.3367 4.2829 -0.5178 10 8 7.7222 3.9677 -0.5201 11 8 5.6606 4.8231 -1.6449 12 6 6.0874 5.4206 0.8044 13 6 5.0012 6.2819 0.7789 14 6 4.7895 7.1782 1.8149 15 6 5.6641 7.2299 2.8765 16 6 6.7729 6.3645 2.9101 17 6 7.6777 6.4083 3.9958 18 1 8.2671 5.5377 4.2431 19 6 7.8097 7.5798 4.7499 20 7 7.3828 8.7190 4.2688 21 14 8.5956 7.5169 6.4434 22 1 8.9908 6.1197 6.7541 23 1 9.7980 8.3882 6.4639 24 1 7.6221 7.9930 7.4588 25 6 6.9746 5.4547 1.8556 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 5.1705 0.7206 -1.2477 34 1 3.7171 -0.3065 -1.2484 35 1 3.7175 1.2348 -2.1386 36 1 3.7602 1.1726 1.9987 37 1 3.6457 3.4236 -0.8422 38 1 3.7912 3.3728 0.9310 39 1 6.0403 2.0699 0.0340 40 1 4.3121 6.2510 -0.0521 41 1 3.9378 7.8417 1.7868 42 1 5.4995 7.9317 3.6807 43 1 7.4746 9.5311 4.7913 44 1 7.8222 4.7857 1.8715 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619485796.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:00 Heat of formation + Delta-G solvation = -152.556450 kcal Electronic energy + Delta-G solvation = -26131.373368 eV Core-core repulsion = 22366.534498 eV Total energy + Delta-G solvation = -3764.838869 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.93799 -39.44701 -38.25393 -36.91090 -35.68796 -35.54503 -34.98625 -31.91935 -31.65804 -31.55459 -27.94160 -27.35345 -26.66250 -23.66871 -22.82883 -22.50459 -21.20554 -20.55724 -19.61522 -18.60583 -17.90047 -17.67991 -16.89228 -16.80797 -16.51678 -16.38663 -15.88579 -15.61073 -15.25989 -15.13451 -15.03677 -14.32105 -14.11805 -13.93692 -13.70738 -13.35275 -13.27941 -13.18803 -13.07486 -13.06581 -13.04963 -12.92054 -12.83073 -12.59383 -12.56197 -12.54957 -12.19483 -12.06584 -11.55538 -11.54269 -11.38959 -11.29201 -11.15457 -10.75542 -10.41006 -9.85010 -9.56186 -8.73979 -6.45920 -0.48902 0.40381 0.83591 1.37187 1.44136 1.52521 2.13556 2.18328 2.54499 2.79502 3.35399 3.45524 3.51310 3.70940 3.89738 3.96903 4.26871 4.30982 4.33056 4.44642 4.51579 4.63296 4.69186 4.80704 4.84578 4.90179 4.90797 4.94309 5.05305 5.06189 5.08969 5.17385 5.20715 5.25312 5.35855 5.40864 5.50744 5.55608 5.56344 5.88290 5.93554 6.08952 6.11606 6.52329 6.79300 6.84241 6.89080 8.24448 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015001 B = 0.003286 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.111113 B = 8517.882811 C = 9172.255294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.143 4.143 4 C 0.134 3.866 5 C -0.148 4.148 6 O -0.566 6.566 7 C 0.084 3.916 8 N -1.098 6.098 9 S 2.719 3.281 10 O -1.000 7.000 11 O -0.986 6.986 12 C -0.637 4.637 13 C -0.146 4.146 14 C -0.122 4.122 15 C -0.140 4.140 16 C 0.062 3.938 17 C -0.498 4.498 18 H 0.079 0.921 19 C 0.036 3.964 20 N -0.825 5.825 21 Si 0.985 3.015 22 H -0.258 1.258 23 H -0.267 1.267 24 H -0.260 1.260 25 C -0.145 4.145 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.388 0.612 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.425 0.575 40 H 0.134 0.866 41 H 0.128 0.872 42 H 0.112 0.888 43 H 0.292 0.708 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.303 -12.918 -4.503 18.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.181 4.181 4 C 0.091 3.909 5 C -0.205 4.205 6 O -0.373 6.373 7 C -0.043 4.043 8 N -0.861 5.861 9 S 2.812 3.188 10 O -0.990 6.990 11 O -0.976 6.976 12 C -0.726 4.726 13 C -0.167 4.167 14 C -0.141 4.141 15 C -0.160 4.160 16 C 0.059 3.941 17 C -0.527 4.527 18 H 0.097 0.903 19 C -0.180 4.180 20 N -0.450 5.450 21 Si 0.805 3.195 22 H -0.181 1.181 23 H -0.192 1.192 24 H -0.185 1.185 25 C -0.166 4.166 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.237 0.763 37 H 0.110 0.890 38 H 0.093 0.907 39 H 0.262 0.738 40 H 0.152 0.848 41 H 0.146 0.854 42 H 0.130 0.870 43 H 0.102 0.898 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -11.662 -12.741 -5.719 18.195 hybrid contribution 0.364 0.799 1.926 2.117 sum -11.299 -11.941 -3.793 16.871 Atomic orbital electron populations 1.21783 0.95441 1.01832 1.01944 1.21454 0.95797 0.95843 1.02449 1.22250 0.93251 0.98593 1.04006 1.21343 0.93446 0.88845 0.87224 1.21876 1.01761 1.01467 0.95399 1.86517 1.77540 1.56946 1.16341 1.22260 0.78589 0.99973 1.03444 1.55104 1.15991 1.25978 1.89045 1.00764 0.71821 0.72811 0.73408 1.93499 1.33490 1.84368 1.87681 1.93487 1.75836 1.79404 1.48836 1.30235 1.05807 1.18475 1.18083 1.20478 0.97979 0.98304 0.99919 1.21153 0.99424 0.98872 0.94630 1.21641 0.94176 1.01091 0.99063 1.18042 0.92368 0.91626 0.92050 1.19887 1.21314 0.99307 1.12199 0.90310 1.26777 0.94446 0.93746 1.02991 1.69829 1.37129 1.00005 1.38066 0.85115 0.78428 0.79723 0.76226 1.18141 1.19233 1.18467 1.20813 0.98616 1.03335 0.93861 0.92479 0.92510 0.92775 0.91666 0.92032 0.90609 0.89887 0.92553 0.90687 0.90082 0.76273 0.88996 0.90686 0.73764 0.84829 0.85421 0.86964 0.89755 0.87514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.91 71.98 0.71 -1.07 16 2 C -0.12 -1.56 5.44 30.59 0.17 -1.39 16 3 C -0.14 -1.96 4.45 30.59 0.14 -1.83 16 4 C 0.13 2.33 0.75 -10.79 -0.01 2.32 16 5 C -0.15 -2.55 8.26 71.98 0.59 -1.96 16 6 O -0.57 -10.57 12.11 -148.98 -1.80 -12.38 16 7 C 0.08 1.81 5.37 86.38 0.46 2.27 16 8 N -1.10 -29.23 5.40 -187.49 -1.01 -30.24 16 9 S 2.72 98.35 5.73 -56.49 -0.32 98.02 16 10 O -1.00 -42.40 17.26 -128.00 -2.21 -44.61 16 11 O -0.99 -37.84 16.73 -128.00 -2.14 -39.98 16 12 C -0.64 -27.16 5.94 22.22 0.13 -27.03 16 13 C -0.15 -5.97 9.53 22.46 0.21 -5.76 16 14 C -0.12 -5.25 10.02 22.22 0.22 -5.02 16 15 C -0.14 -6.99 8.70 22.73 0.20 -6.80 16 16 C 0.06 3.29 5.57 -21.29 -0.12 3.17 16 17 C -0.50 -26.33 9.05 23.46 0.21 -26.12 16 18 H 0.08 4.04 7.91 -2.91 -0.02 4.02 16 19 C 0.04 1.75 5.14 85.26 0.44 2.19 16 20 N -0.82 -41.80 10.97 21.83 0.24 -41.56 16 21 Si 0.98 37.11 29.60 68.60 2.03 39.14 16 22 H -0.26 -9.56 7.11 99.48 0.71 -8.86 16 23 H -0.27 -9.77 7.11 99.48 0.71 -9.06 16 24 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 25 C -0.15 -7.11 9.26 22.73 0.21 -6.90 16 26 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.86 6.43 -2.39 -0.02 0.84 16 30 H 0.06 0.91 7.68 -2.39 -0.02 0.89 16 31 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.06 1.07 6.89 -2.39 -0.02 1.06 16 34 H 0.07 1.16 6.43 -2.39 -0.02 1.15 16 35 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.39 5.43 9.05 -74.05 -0.67 4.76 16 37 H 0.09 1.91 7.75 -2.39 -0.02 1.89 16 38 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.42 10.30 7.58 -96.74 -0.73 9.57 16 40 H 0.13 4.67 7.59 -2.91 -0.02 4.65 16 41 H 0.13 4.63 8.06 -2.91 -0.02 4.60 16 42 H 0.11 5.78 6.18 -2.91 -0.02 5.76 16 43 H 0.29 13.24 8.30 -92.71 -0.77 12.47 16 44 H 0.11 5.15 7.60 -2.91 -0.02 5.13 16 Total: -1.00 -66.64 370.96 -2.03 -68.67 By element: Atomic # 1 Polarization: 37.24 SS G_CDS: -0.38 Total: 36.86 kcal Atomic # 6 Polarization: -77.49 SS G_CDS: 3.58 Total: -73.92 kcal Atomic # 7 Polarization: -71.03 SS G_CDS: -0.77 Total: -71.81 kcal Atomic # 8 Polarization: -90.81 SS G_CDS: -6.16 Total: -96.97 kcal Atomic # 14 Polarization: 37.11 SS G_CDS: 2.03 Total: 39.14 kcal Atomic # 16 Polarization: 98.35 SS G_CDS: -0.32 Total: 98.02 kcal Total: -66.64 -2.03 -68.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619485796.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.884 kcal (2) G-P(sol) polarization free energy of solvation -66.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds