Wall clock time and date at job start Tue Mar 31 2020 14:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47395 * 2 1 4 4 C 1.52995 * 109.46877 * 180.02562 * 3 2 1 5 5 C 1.53007 * 109.47321 * 304.99861 * 4 3 2 6 6 O 1.42896 * 109.47547 * 65.00279 * 4 3 2 7 7 C 1.53007 * 109.46787 * 184.99978 * 4 3 2 8 8 N 1.46499 * 109.46835 * 180.02562 * 7 4 3 9 9 S 1.65600 * 119.99999 * 165.00471 * 8 7 4 10 10 O 1.42107 * 106.39926 * 311.45676 * 9 8 7 11 11 O 1.42092 * 106.40446 * 178.53707 * 9 8 7 12 12 C 1.76205 * 107.22194 * 64.99559 * 9 8 7 13 13 C 1.38661 * 119.87334 * 269.73299 * 12 9 8 14 14 C 1.38613 * 120.49578 * 179.71738 * 13 12 9 15 15 C 1.37633 * 120.25099 * 0.55558 * 14 13 12 16 16 C 1.40703 * 119.74279 * 359.71984 * 15 14 13 17 17 C 1.41399 * 120.24468 * 180.02562 * 16 15 14 18 18 H 1.07991 * 120.00076 * 204.36483 * 17 16 15 19 19 C 1.39953 * 119.99881 * 24.36256 * 17 16 15 20 20 N 1.30827 * 119.99809 * 17.87269 * 19 17 16 21 21 Si 1.86803 * 119.99871 * 197.87671 * 19 17 16 22 22 H 1.48499 * 109.46873 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47159 * 119.99956 * 21 19 17 24 24 H 1.48498 * 109.46534 * 240.00127 * 21 19 17 25 25 C 1.37590 * 119.87493 * 89.99803 * 12 9 8 26 26 H 1.08997 * 109.47887 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47114 * 300.00019 * 1 2 3 28 28 H 1.09003 * 109.47251 * 59.99725 * 1 2 3 29 29 H 1.09005 * 109.47114 * 239.99981 * 2 1 3 30 30 H 1.08996 * 109.46907 * 120.00312 * 2 1 3 31 31 H 1.08996 * 109.46905 * 59.99925 * 3 2 1 32 32 H 1.09003 * 109.47146 * 300.00339 * 3 2 1 33 33 H 1.08998 * 109.46882 * 300.00236 * 5 4 3 34 34 H 1.09001 * 109.46631 * 60.00116 * 5 4 3 35 35 H 1.08998 * 109.46980 * 180.02562 * 5 4 3 36 36 H 0.96702 * 114.00067 * 59.99492 * 6 4 3 37 37 H 1.09001 * 109.46889 * 60.00455 * 7 4 3 38 38 H 1.08992 * 109.46924 * 299.99826 * 7 4 3 39 39 H 0.96996 * 120.00325 * 344.99459 * 8 7 4 40 40 H 1.07999 * 119.75189 * 359.97438 * 13 12 9 41 41 H 1.08002 * 119.87279 * 180.25460 * 14 13 12 42 42 H 1.07997 * 120.13054 * 179.70211 * 15 14 13 43 43 H 0.96999 * 119.99734 * 179.97438 * 20 19 17 44 44 H 1.08002 * 120.13079 * 359.97438 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0805 0.6148 1.1807 6 8 4.0459 0.8732 -1.2219 7 6 4.0801 2.8794 0.1251 8 7 5.5451 2.8793 0.1238 9 16 6.3730 4.2917 -0.1254 10 8 5.7910 4.9014 -1.2695 11 8 7.7538 3.9690 -0.0344 12 6 6.0189 5.3513 1.2373 13 6 4.9393 6.2192 1.1750 14 6 4.6455 7.0542 2.2417 15 6 5.4313 7.0383 3.3715 16 6 6.5328 6.1658 3.4435 17 6 7.3468 6.1403 4.5994 18 1 8.3697 5.8007 4.5321 19 6 6.8269 6.5553 5.8307 20 7 5.5320 6.6310 6.0019 21 14 7.9817 7.0012 7.2297 22 1 9.3880 6.8323 6.7835 23 1 7.7544 8.4135 7.6281 24 1 7.7206 6.1114 8.3896 25 6 6.8180 5.3184 2.3568 26 1 -0.3635 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9563 0.8899 32 1 1.6767 1.9564 -0.8900 33 1 3.7176 1.0490 2.1123 34 1 3.7170 -0.4089 1.0911 35 1 5.1705 0.6151 1.1804 36 1 3.7602 1.3478 -2.0146 37 1 3.7172 3.3135 1.0567 38 1 3.7165 3.4689 -0.7165 39 1 6.0302 2.0521 0.2691 40 1 4.3201 6.2418 0.2904 41 1 3.7997 7.7233 2.1840 42 1 5.2034 7.6931 4.1996 43 1 5.1717 6.9182 6.8554 44 1 7.6608 4.6444 2.4017 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619485797.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:04 Heat of formation + Delta-G solvation = -130.149885 kcal Electronic energy + Delta-G solvation = -26201.393302 eV Core-core repulsion = 22437.526054 eV Total energy + Delta-G solvation = -3763.867248 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.11126 -37.65820 -36.64114 -35.29136 -34.56822 -34.24095 -33.86488 -30.78523 -30.09979 -29.80555 -27.18069 -25.81330 -25.49485 -21.92496 -21.82477 -21.00585 -20.34196 -19.08260 -17.99230 -17.30542 -16.73147 -15.97754 -15.73291 -15.51058 -15.15664 -14.90253 -14.65269 -14.59819 -14.22177 -13.53170 -13.44907 -13.35114 -13.00328 -12.60276 -12.47048 -12.21149 -12.04344 -11.91817 -11.85124 -11.61451 -11.59131 -11.51516 -11.41762 -11.39408 -11.38463 -11.00119 -10.91716 -10.80631 -10.62602 -10.60335 -9.96854 -9.79958 -9.67285 -9.37844 -9.12068 -8.06226 -7.72936 -6.95537 -4.55759 1.04106 2.17782 2.60354 2.98866 3.02558 3.05836 3.56309 3.81249 4.13039 4.23988 4.40937 4.48768 4.65699 4.71546 4.93986 5.01599 5.04818 5.27478 5.37559 5.40309 5.55331 5.58048 5.63618 5.68592 5.79345 5.84750 5.88748 5.96871 6.01258 6.10395 6.15275 6.15631 6.23077 6.63615 6.74016 6.83165 7.01032 7.18585 7.25459 7.36498 7.57790 7.70395 7.79193 7.92150 8.38407 8.64664 8.69654 9.99862 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013370 B = 0.003508 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.709549 B = 7979.650937 C = 8908.419575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.146 4.146 4 C 0.127 3.873 5 C -0.144 4.144 6 O -0.554 6.554 7 C 0.094 3.906 8 N -1.113 6.113 9 S 2.691 3.309 10 O -0.978 6.978 11 O -0.973 6.973 12 C -0.632 4.632 13 C -0.151 4.151 14 C -0.120 4.120 15 C -0.119 4.119 16 C 0.091 3.909 17 C -0.459 4.459 18 H 0.083 0.917 19 C 0.075 3.925 20 N -0.794 5.794 21 Si 0.911 3.089 22 H -0.258 1.258 23 H -0.271 1.271 24 H -0.273 1.273 25 C -0.123 4.123 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.376 0.624 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.415 0.585 40 H 0.105 0.895 41 H 0.098 0.902 42 H 0.125 0.875 43 H 0.283 0.717 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.446 -9.368 -6.648 14.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.184 4.184 4 C 0.085 3.915 5 C -0.201 4.201 6 O -0.360 6.360 7 C -0.033 4.033 8 N -0.873 5.873 9 S 2.786 3.214 10 O -0.968 6.968 11 O -0.963 6.963 12 C -0.724 4.724 13 C -0.172 4.172 14 C -0.140 4.140 15 C -0.139 4.139 16 C 0.088 3.912 17 C -0.489 4.489 18 H 0.101 0.899 19 C -0.143 4.143 20 N -0.419 5.419 21 Si 0.735 3.265 22 H -0.182 1.182 23 H -0.196 1.196 24 H -0.199 1.199 25 C -0.144 4.144 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.224 0.776 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.251 0.749 40 H 0.123 0.877 41 H 0.116 0.884 42 H 0.142 0.858 43 H 0.094 0.906 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.904 -9.415 -6.826 14.061 hybrid contribution -0.078 0.616 1.193 1.345 sum -7.982 -8.799 -5.634 13.148 Atomic orbital electron populations 1.21796 0.96086 1.01458 1.01758 1.21516 0.95325 0.96331 1.02728 1.22268 0.94751 0.98097 1.03308 1.21381 0.92430 0.91499 0.86155 1.21833 1.02147 1.00209 0.95908 1.86531 1.77260 1.56899 1.15280 1.21932 0.80224 0.98050 1.03089 1.55436 1.14673 1.26005 1.91151 1.01599 0.72573 0.72667 0.74528 1.93500 1.78876 1.76260 1.48119 1.93536 1.31294 1.83814 1.87703 1.29760 1.07991 1.17299 1.17302 1.20071 0.97916 1.00525 0.98690 1.20804 0.99364 0.99399 0.94418 1.21633 0.96758 0.98731 0.96779 1.17694 0.92116 0.89446 0.91963 1.19662 0.99247 1.38197 0.91766 0.89860 1.25939 0.95415 0.92573 1.00368 1.69787 1.12708 1.33565 1.25833 0.86207 0.81465 0.78967 0.79868 1.18193 1.19589 1.19852 1.20781 0.99410 1.00525 0.93722 0.92905 0.92751 0.92887 0.91444 0.91558 0.90489 0.91312 0.90610 0.91381 0.91672 0.77648 0.90417 0.90272 0.74943 0.87682 0.88428 0.85763 0.90641 0.87052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.16 0.37 -0.76 16 2 C -0.12 -0.99 5.34 -26.73 -0.14 -1.13 16 3 C -0.15 -1.26 4.48 -26.73 -0.12 -1.38 16 4 C 0.13 1.31 0.78 -90.62 -0.07 1.24 16 5 C -0.14 -1.50 8.18 37.16 0.30 -1.19 16 6 O -0.55 -5.85 12.38 -35.23 -0.44 -6.28 16 7 C 0.09 1.18 5.33 -4.04 -0.02 1.15 16 8 N -1.11 -16.16 5.72 -10.61 -0.06 -16.22 16 9 S 2.69 50.16 5.74 -107.50 -0.62 49.55 16 10 O -0.98 -19.62 16.73 -57.17 -0.96 -20.58 16 11 O -0.97 -20.63 17.26 -57.17 -0.99 -21.62 16 12 C -0.63 -13.59 5.94 -39.66 -0.24 -13.83 16 13 C -0.15 -3.20 9.53 -39.29 -0.37 -3.57 16 14 C -0.12 -2.65 10.02 -39.66 -0.40 -3.05 16 15 C -0.12 -2.93 8.70 -38.87 -0.34 -3.27 16 16 C 0.09 2.33 5.58 -106.82 -0.60 1.74 16 17 C -0.46 -11.69 9.06 -37.74 -0.34 -12.04 16 18 H 0.08 2.06 7.91 -52.49 -0.42 1.64 16 19 C 0.08 1.79 5.14 -17.34 -0.09 1.70 16 20 N -0.79 -19.31 10.95 55.55 0.61 -18.70 16 21 Si 0.91 17.89 29.60 -169.99 -5.03 12.86 16 22 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 23 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 24 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 25 C -0.12 -2.93 9.26 -38.88 -0.36 -3.29 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.58 7.82 -51.93 -0.41 0.17 16 30 H 0.07 0.55 6.35 -51.93 -0.33 0.22 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.64 6.35 -51.93 -0.33 0.31 16 35 H 0.06 0.71 6.60 -51.93 -0.34 0.37 16 36 H 0.38 2.96 9.05 45.56 0.41 3.37 16 37 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.08 0.95 7.75 -51.93 -0.40 0.54 16 39 H 0.42 5.49 7.08 -34.47 -0.24 5.24 16 40 H 0.11 2.00 7.59 -52.49 -0.40 1.60 16 41 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 42 H 0.12 3.11 6.16 -52.49 -0.32 2.78 16 43 H 0.28 6.22 8.30 -40.82 -0.34 5.88 16 44 H 0.11 2.56 7.60 -52.49 -0.40 2.16 16 LS Contribution 370.56 15.07 5.58 5.58 Total: -1.00 -30.61 370.56 -10.00 -40.61 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -5.69 Total: 12.48 kcal Atomic # 6 Polarization: -35.26 SS G_CDS: -2.41 Total: -37.67 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: 0.55 Total: -34.92 kcal Atomic # 8 Polarization: -46.10 SS G_CDS: -2.38 Total: -48.48 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.03 Total: 12.86 kcal Atomic # 16 Polarization: 50.16 SS G_CDS: -0.62 Total: 49.55 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.61 -10.00 -40.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619485797.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.539 kcal (2) G-P(sol) polarization free energy of solvation -30.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds