Wall clock time and date at job start Tue Mar 31 2020 14:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47395 * 2 1 4 4 C 1.52995 * 109.46877 * 180.02562 * 3 2 1 5 5 C 1.53007 * 109.47321 * 304.99861 * 4 3 2 6 6 O 1.42896 * 109.47547 * 65.00279 * 4 3 2 7 7 C 1.53007 * 109.46787 * 184.99978 * 4 3 2 8 8 N 1.46499 * 109.46835 * 180.02562 * 7 4 3 9 9 S 1.65600 * 119.99999 * 165.00471 * 8 7 4 10 10 O 1.42107 * 106.39926 * 311.45676 * 9 8 7 11 11 O 1.42092 * 106.40446 * 178.53707 * 9 8 7 12 12 C 1.76205 * 107.22194 * 64.99559 * 9 8 7 13 13 C 1.38661 * 119.87334 * 269.73299 * 12 9 8 14 14 C 1.38613 * 120.49578 * 179.71738 * 13 12 9 15 15 C 1.37633 * 120.25099 * 0.55558 * 14 13 12 16 16 C 1.40703 * 119.74279 * 359.71984 * 15 14 13 17 17 C 1.41399 * 120.24468 * 180.02562 * 16 15 14 18 18 H 1.07991 * 120.00076 * 204.36483 * 17 16 15 19 19 C 1.39953 * 119.99881 * 24.36256 * 17 16 15 20 20 N 1.30827 * 119.99809 * 17.87269 * 19 17 16 21 21 Si 1.86803 * 119.99871 * 197.87671 * 19 17 16 22 22 H 1.48499 * 109.46873 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47159 * 119.99956 * 21 19 17 24 24 H 1.48498 * 109.46534 * 240.00127 * 21 19 17 25 25 C 1.37590 * 119.87493 * 89.99803 * 12 9 8 26 26 H 1.08997 * 109.47887 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47114 * 300.00019 * 1 2 3 28 28 H 1.09003 * 109.47251 * 59.99725 * 1 2 3 29 29 H 1.09005 * 109.47114 * 239.99981 * 2 1 3 30 30 H 1.08996 * 109.46907 * 120.00312 * 2 1 3 31 31 H 1.08996 * 109.46905 * 59.99925 * 3 2 1 32 32 H 1.09003 * 109.47146 * 300.00339 * 3 2 1 33 33 H 1.08998 * 109.46882 * 300.00236 * 5 4 3 34 34 H 1.09001 * 109.46631 * 60.00116 * 5 4 3 35 35 H 1.08998 * 109.46980 * 180.02562 * 5 4 3 36 36 H 0.96702 * 114.00067 * 59.99492 * 6 4 3 37 37 H 1.09001 * 109.46889 * 60.00455 * 7 4 3 38 38 H 1.08992 * 109.46924 * 299.99826 * 7 4 3 39 39 H 0.96996 * 120.00325 * 344.99459 * 8 7 4 40 40 H 1.07999 * 119.75189 * 359.97438 * 13 12 9 41 41 H 1.08002 * 119.87279 * 180.25460 * 14 13 12 42 42 H 1.07997 * 120.13054 * 179.70211 * 15 14 13 43 43 H 0.96999 * 119.99734 * 179.97438 * 20 19 17 44 44 H 1.08002 * 120.13079 * 359.97438 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0805 0.6148 1.1807 6 8 4.0459 0.8732 -1.2219 7 6 4.0801 2.8794 0.1251 8 7 5.5451 2.8793 0.1238 9 16 6.3730 4.2917 -0.1254 10 8 5.7910 4.9014 -1.2695 11 8 7.7538 3.9690 -0.0344 12 6 6.0189 5.3513 1.2373 13 6 4.9393 6.2192 1.1750 14 6 4.6455 7.0542 2.2417 15 6 5.4313 7.0383 3.3715 16 6 6.5328 6.1658 3.4435 17 6 7.3468 6.1403 4.5994 18 1 8.3697 5.8007 4.5321 19 6 6.8269 6.5553 5.8307 20 7 5.5320 6.6310 6.0019 21 14 7.9817 7.0012 7.2297 22 1 9.3880 6.8323 6.7835 23 1 7.7544 8.4135 7.6281 24 1 7.7206 6.1114 8.3896 25 6 6.8180 5.3184 2.3568 26 1 -0.3635 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9563 0.8899 32 1 1.6767 1.9564 -0.8900 33 1 3.7176 1.0490 2.1123 34 1 3.7170 -0.4089 1.0911 35 1 5.1705 0.6151 1.1804 36 1 3.7602 1.3478 -2.0146 37 1 3.7172 3.3135 1.0567 38 1 3.7165 3.4689 -0.7165 39 1 6.0302 2.0521 0.2691 40 1 4.3201 6.2418 0.2904 41 1 3.7997 7.7233 2.1840 42 1 5.2034 7.6931 4.1996 43 1 5.1717 6.9182 6.8554 44 1 7.6608 4.6444 2.4017 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619485797.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:03 Heat of formation + Delta-G solvation = -151.788789 kcal Electronic energy + Delta-G solvation = -26202.331635 eV Core-core repulsion = 22437.526054 eV Total energy + Delta-G solvation = -3764.805581 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.95717 -39.44368 -38.24754 -36.90571 -35.68920 -35.54314 -35.02879 -31.91430 -31.63547 -31.57365 -27.98554 -27.35084 -26.67515 -23.66701 -22.82776 -22.53768 -21.16023 -20.57483 -19.63538 -18.62748 -17.90079 -17.69897 -16.91286 -16.70822 -16.55302 -16.40711 -15.89465 -15.50905 -15.38271 -15.14455 -15.04852 -14.31308 -14.12135 -13.95679 -13.68097 -13.38566 -13.31498 -13.20747 -13.08776 -13.07117 -13.03327 -12.92735 -12.79865 -12.61472 -12.56767 -12.53704 -12.21415 -12.09276 -11.56020 -11.50734 -11.36070 -11.30949 -11.15019 -10.83518 -10.37443 -9.84912 -9.56185 -8.74072 -6.45500 -0.48283 0.40544 0.83964 1.37191 1.44023 1.51861 2.14557 2.17368 2.55317 2.78802 3.31616 3.50059 3.52161 3.67090 3.86778 3.96310 4.24371 4.28597 4.31478 4.44836 4.52165 4.63561 4.68136 4.78422 4.84618 4.88069 4.90491 4.93037 5.03877 5.05550 5.08164 5.15710 5.20612 5.23628 5.34360 5.40935 5.48737 5.53811 5.56618 5.88731 5.93965 6.07968 6.11242 6.52548 6.79304 6.84521 6.90039 8.23867 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013370 B = 0.003508 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.709549 B = 7979.650937 C = 8908.419575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.143 4.143 4 C 0.135 3.865 5 C -0.150 4.150 6 O -0.564 6.564 7 C 0.084 3.916 8 N -1.099 6.099 9 S 2.721 3.279 10 O -0.985 6.985 11 O -0.999 6.999 12 C -0.637 4.637 13 C -0.147 4.147 14 C -0.121 4.121 15 C -0.141 4.141 16 C 0.063 3.937 17 C -0.498 4.498 18 H 0.076 0.924 19 C 0.039 3.961 20 N -0.819 5.819 21 Si 0.981 3.019 22 H -0.262 1.262 23 H -0.262 1.262 24 H -0.263 1.263 25 C -0.146 4.146 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.056 0.944 36 H 0.388 0.612 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.423 0.577 40 H 0.134 0.866 41 H 0.128 0.872 42 H 0.113 0.887 43 H 0.292 0.708 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.675 -9.809 -7.226 15.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.181 4.181 4 C 0.093 3.907 5 C -0.207 4.207 6 O -0.371 6.371 7 C -0.043 4.043 8 N -0.862 5.862 9 S 2.814 3.186 10 O -0.975 6.975 11 O -0.990 6.990 12 C -0.726 4.726 13 C -0.168 4.168 14 C -0.141 4.141 15 C -0.161 4.161 16 C 0.060 3.940 17 C -0.527 4.527 18 H 0.094 0.906 19 C -0.176 4.176 20 N -0.445 5.445 21 Si 0.802 3.198 22 H -0.185 1.185 23 H -0.187 1.187 24 H -0.188 1.188 25 C -0.167 4.167 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.238 0.762 37 H 0.093 0.907 38 H 0.108 0.892 39 H 0.261 0.739 40 H 0.152 0.848 41 H 0.146 0.854 42 H 0.131 0.869 43 H 0.103 0.897 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -9.149 -9.838 -7.400 15.338 hybrid contribution 0.210 0.684 1.239 1.431 sum -8.940 -9.154 -6.160 14.200 Atomic orbital electron populations 1.21785 0.95410 1.01868 1.01931 1.21486 0.95877 0.95837 1.02454 1.22250 0.93231 0.98649 1.03965 1.21298 0.93433 0.89810 0.86137 1.21895 1.01651 1.00963 0.96166 1.86514 1.77564 1.57233 1.15828 1.22244 0.78520 1.00017 1.03492 1.55102 1.15756 1.24668 1.90684 1.00718 0.71856 0.72707 0.73347 1.93485 1.78988 1.77129 1.47902 1.93496 1.33477 1.84225 1.87763 1.30240 1.07208 1.17761 1.17420 1.20472 0.97688 0.99350 0.99245 1.21148 0.99620 0.99643 0.93643 1.21643 0.97568 0.99208 0.97656 1.18037 0.92938 0.90282 0.92793 1.19869 0.99289 1.40525 0.93063 0.90572 1.26704 0.96907 0.91798 1.02235 1.69810 1.14030 1.33666 1.26974 0.85163 0.78927 0.79021 0.76694 1.18535 1.18666 1.18794 1.20837 1.00251 1.00971 0.94612 0.92437 0.92810 0.92475 0.91741 0.91820 0.90409 0.90118 0.90580 0.90424 0.92523 0.76232 0.90656 0.89184 0.73933 0.84839 0.85432 0.86908 0.89723 0.87469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 71.98 0.71 -1.22 16 2 C -0.12 -1.70 5.34 30.59 0.16 -1.54 16 3 C -0.14 -2.14 4.48 30.59 0.14 -2.00 16 4 C 0.14 2.53 0.78 -10.79 -0.01 2.52 16 5 C -0.15 -2.92 8.18 71.98 0.59 -2.33 16 6 O -0.56 -10.64 12.38 -148.98 -1.84 -12.49 16 7 C 0.08 1.92 5.33 86.38 0.46 2.38 16 8 N -1.10 -30.38 5.72 -187.49 -1.07 -31.46 16 9 S 2.72 98.58 5.74 -56.49 -0.32 98.26 16 10 O -0.99 -37.51 16.73 -128.00 -2.14 -39.65 16 11 O -1.00 -42.11 17.26 -128.00 -2.21 -44.32 16 12 C -0.64 -27.20 5.94 22.22 0.13 -27.06 16 13 C -0.15 -6.01 9.53 22.46 0.21 -5.80 16 14 C -0.12 -5.24 10.02 22.22 0.22 -5.02 16 15 C -0.14 -7.05 8.70 22.73 0.20 -6.85 16 16 C 0.06 3.31 5.58 -21.29 -0.12 3.19 16 17 C -0.50 -26.33 9.06 23.46 0.21 -26.12 16 18 H 0.08 3.95 7.91 -2.92 -0.02 3.93 16 19 C 0.04 1.91 5.14 85.26 0.44 2.34 16 20 N -0.82 -40.45 10.95 21.83 0.24 -40.21 16 21 Si 0.98 36.95 29.60 68.60 2.03 38.98 16 22 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 23 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 24 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 25 C -0.15 -7.12 9.26 22.73 0.21 -6.91 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.05 0.68 8.14 -2.38 -0.02 0.67 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.97 7.82 -2.38 -0.02 0.95 16 30 H 0.06 0.94 6.35 -2.39 -0.02 0.92 16 31 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.08 1.35 6.35 -2.39 -0.02 1.34 16 35 H 0.06 1.18 6.60 -2.39 -0.02 1.17 16 36 H 0.39 5.10 9.05 -74.06 -0.67 4.43 16 37 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.09 1.90 7.75 -2.39 -0.02 1.88 16 39 H 0.42 10.69 7.08 -96.75 -0.69 10.00 16 40 H 0.13 4.67 7.59 -2.91 -0.02 4.65 16 41 H 0.13 4.63 8.06 -2.91 -0.02 4.60 16 42 H 0.11 5.80 6.16 -2.91 -0.02 5.78 16 43 H 0.29 12.88 8.30 -92.71 -0.77 12.11 16 44 H 0.11 5.16 7.60 -2.91 -0.02 5.13 16 Total: -1.00 -65.55 370.56 -2.09 -67.64 By element: Atomic # 1 Polarization: 37.98 SS G_CDS: -0.33 Total: 37.65 kcal Atomic # 6 Polarization: -77.97 SS G_CDS: 3.56 Total: -74.41 kcal Atomic # 7 Polarization: -70.83 SS G_CDS: -0.83 Total: -71.67 kcal Atomic # 8 Polarization: -90.26 SS G_CDS: -6.20 Total: -96.46 kcal Atomic # 14 Polarization: 36.95 SS G_CDS: 2.03 Total: 38.98 kcal Atomic # 16 Polarization: 98.58 SS G_CDS: -0.32 Total: 98.26 kcal Total: -65.55 -2.09 -67.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619485797.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.145 kcal (2) G-P(sol) polarization free energy of solvation -65.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds