Wall clock time and date at job start Tue Mar 31 2020 14:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47282 * 2 1 4 4 C 1.52998 * 109.47640 * 120.00716 * 2 1 3 5 5 C 1.53004 * 109.46861 * 304.99760 * 4 2 1 6 6 O 1.42902 * 109.47258 * 64.99521 * 4 2 1 7 7 C 1.52996 * 109.47148 * 184.99896 * 4 2 1 8 8 N 1.46502 * 109.47114 * 179.97438 * 7 4 2 9 9 S 1.65596 * 120.00190 * 164.99773 * 8 7 4 10 10 O 1.42102 * 106.40318 * 178.54258 * 9 8 7 11 11 O 1.42104 * 106.40275 * 311.45808 * 9 8 7 12 12 C 1.76197 * 107.21758 * 64.99850 * 9 8 7 13 13 C 1.38656 * 119.87912 * 269.72587 * 12 9 8 14 14 C 1.38614 * 120.50264 * 179.72360 * 13 12 9 15 15 C 1.37635 * 120.24778 * 0.55358 * 14 13 12 16 16 C 1.40700 * 119.74383 * 359.72439 * 15 14 13 17 17 C 1.41401 * 120.24244 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99928 * 150.20922 * 17 16 15 19 19 C 1.39939 * 120.00124 * 330.20662 * 17 16 15 20 20 N 1.30823 * 120.00208 * 161.73548 * 19 17 16 21 21 Si 1.86800 * 120.00076 * 341.73946 * 19 17 16 22 22 H 1.48504 * 109.47548 * 95.40681 * 21 19 17 23 23 H 1.48499 * 109.47524 * 215.40815 * 21 19 17 24 24 H 1.48505 * 109.47117 * 335.40899 * 21 19 17 25 25 C 1.37604 * 119.87380 * 90.00521 * 12 9 8 26 26 H 1.09004 * 109.46681 * 299.99698 * 1 2 3 27 27 H 1.08997 * 109.47740 * 59.99379 * 1 2 3 28 28 H 1.09002 * 109.47412 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46681 * 240.00302 * 2 1 3 30 30 H 1.08997 * 109.47547 * 300.00477 * 3 2 1 31 31 H 1.08997 * 109.46670 * 60.00679 * 3 2 1 32 32 H 1.09000 * 109.47343 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.46877 * 180.02562 * 5 4 2 34 34 H 1.08993 * 109.46780 * 59.99670 * 5 4 2 35 35 H 1.09003 * 109.46714 * 299.99912 * 5 4 2 36 36 H 0.96700 * 113.99557 * 59.99939 * 6 4 2 37 37 H 1.09001 * 109.47179 * 299.99195 * 7 4 2 38 38 H 1.08994 * 109.47853 * 59.99860 * 7 4 2 39 39 H 0.97000 * 120.00074 * 344.99555 * 8 7 4 40 40 H 1.08000 * 119.74739 * 0.02562 * 13 12 9 41 41 H 1.08003 * 119.87536 * 180.25861 * 14 13 12 42 42 H 1.07995 * 120.12935 * 179.71024 * 15 14 13 43 43 H 0.97003 * 120.00218 * 180.02562 * 20 19 17 44 44 H 1.07992 * 120.12782 * 359.97206 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.4300 -0.0765 2.4953 6 8 1.6620 -2.0983 1.1918 7 6 3.5648 -0.6134 1.3134 8 7 4.0532 -1.3036 2.5098 9 16 5.6608 -1.6742 2.6537 10 8 5.8168 -2.2987 3.9206 11 8 6.0415 -2.2907 1.4312 12 6 6.5417 -0.1506 2.7381 13 6 7.0001 0.4476 1.5742 14 6 7.6896 1.6491 1.6251 15 6 7.9366 2.2560 2.8355 16 6 7.4812 1.6551 4.0235 17 6 7.7286 2.2698 5.2726 18 1 7.0358 2.1308 6.0894 19 6 8.8711 3.0580 5.4506 20 7 8.9340 3.9032 6.4472 21 14 10.3063 2.9036 4.2650 22 1 10.1941 3.9460 3.2132 23 1 11.5813 3.0825 5.0051 24 1 10.2847 1.5595 3.6340 25 6 6.7773 0.4382 3.9593 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8932 -0.5138 -0.8901 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9562 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.7938 -0.5901 3.3852 34 1 0.3438 -0.1533 2.4494 35 1 1.7185 0.9738 2.5389 36 1 2.0141 -2.5712 0.4253 37 1 3.9994 -1.0729 0.4257 38 1 3.8533 0.4368 1.3572 39 1 3.4350 -1.5435 3.2177 40 1 6.8143 -0.0236 0.6204 41 1 8.0384 2.1082 0.7119 42 1 8.4780 3.1896 2.8733 43 1 9.7258 4.4499 6.5703 44 1 6.4229 -0.0315 4.8649 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619485810.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:08 Heat of formation + Delta-G solvation = -121.296721 kcal Electronic energy + Delta-G solvation = -26675.101499 eV Core-core repulsion = 22911.618153 eV Total energy + Delta-G solvation = -3763.483346 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.53222 -37.95781 -36.75807 -35.40352 -34.54283 -34.43294 -33.81379 -30.76340 -30.20147 -29.61945 -27.84766 -26.07631 -25.41810 -22.83868 -22.42104 -20.94665 -19.73939 -19.16601 -18.08269 -17.43246 -16.92279 -16.35273 -15.95498 -15.47328 -15.20935 -14.92242 -14.85565 -14.58237 -14.14913 -13.85146 -13.23370 -13.18145 -12.94828 -12.91057 -12.78608 -12.44122 -12.27055 -12.11600 -11.90265 -11.74125 -11.71098 -11.69074 -11.62236 -11.48926 -11.40831 -11.07581 -11.06657 -10.82686 -10.57533 -10.38331 -10.05585 -10.00067 -9.80548 -9.40989 -9.15424 -8.31732 -7.91937 -7.11993 -4.67668 0.89387 1.87331 2.37588 2.96478 3.09154 3.18137 3.42138 3.82578 4.05667 4.08348 4.29319 4.39130 4.50685 4.63809 4.90015 4.99944 5.02361 5.11882 5.24738 5.39128 5.45244 5.54991 5.66886 5.70260 5.71047 5.73913 5.76984 5.86023 5.90869 5.96461 6.00389 6.12251 6.16455 6.25707 6.42081 6.54474 6.82759 7.02024 7.15520 7.15963 7.34916 7.51058 7.58134 7.73705 8.14694 8.38768 8.58017 9.89807 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.016623 B = 0.003756 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.984194 B = 7453.142457 C = 7997.292488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.119 4.119 3 C -0.157 4.157 4 C 0.132 3.868 5 C -0.145 4.145 6 O -0.553 6.553 7 C 0.091 3.909 8 N -1.113 6.113 9 S 2.691 3.309 10 O -0.969 6.969 11 O -0.974 6.974 12 C -0.625 4.625 13 C -0.160 4.160 14 C -0.092 4.092 15 C -0.198 4.198 16 C 0.074 3.926 17 C -0.443 4.443 18 H 0.095 0.905 19 C 0.084 3.916 20 N -0.799 5.799 21 Si 0.906 3.094 22 H -0.268 1.268 23 H -0.286 1.286 24 H -0.243 1.243 25 C -0.102 4.102 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.376 0.624 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.416 0.584 40 H 0.111 0.889 41 H 0.103 0.897 42 H 0.106 0.894 43 H 0.288 0.712 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.682 -3.905 -11.396 17.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.138 4.138 3 C -0.214 4.214 4 C 0.090 3.910 5 C -0.203 4.203 6 O -0.359 6.359 7 C -0.036 4.036 8 N -0.873 5.873 9 S 2.785 3.215 10 O -0.959 6.959 11 O -0.964 6.964 12 C -0.716 4.716 13 C -0.181 4.181 14 C -0.111 4.111 15 C -0.218 4.218 16 C 0.069 3.931 17 C -0.471 4.471 18 H 0.113 0.887 19 C -0.136 4.136 20 N -0.423 5.423 21 Si 0.732 3.268 22 H -0.194 1.194 23 H -0.213 1.213 24 H -0.166 1.166 25 C -0.123 4.123 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.224 0.776 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.252 0.748 40 H 0.129 0.871 41 H 0.121 0.879 42 H 0.124 0.876 43 H 0.099 0.901 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.422 -4.369 -10.743 16.994 hybrid contribution 0.962 0.797 -0.613 1.392 sum -11.460 -3.572 -11.357 16.524 Atomic orbital electron populations 1.21828 0.94376 1.02236 1.01730 1.21739 0.97073 0.97284 0.97710 1.22019 1.01865 0.95160 1.02392 1.21364 0.91546 0.82279 0.95843 1.21880 1.01530 1.00711 0.96135 1.86542 1.76692 1.21757 1.50867 1.22056 0.95589 0.98261 0.87730 1.55450 1.27153 1.76016 1.28648 1.01671 0.72183 0.74520 0.73110 1.93557 1.85040 1.74764 1.42529 1.93510 1.81847 1.74396 1.46618 1.29973 1.18520 1.22831 1.00319 1.20050 1.05382 0.97603 0.95070 1.20698 0.98360 0.95307 0.96744 1.21300 1.06979 1.00705 0.92785 1.17791 0.91543 0.90558 0.93164 1.19526 1.07086 1.23004 0.97477 0.88657 1.26156 1.00312 0.91598 0.95524 1.69676 1.29393 1.15290 1.27896 0.86377 0.79018 0.81594 0.79821 1.19417 1.21284 1.16638 1.20857 1.02228 0.94841 0.94328 0.92185 0.92883 0.92130 0.90728 0.92375 0.91880 0.91653 0.91675 0.91307 0.90436 0.77634 0.90241 0.90091 0.74805 0.87142 0.87928 0.87626 0.90149 0.86246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 8.60 37.15 0.32 -0.76 16 2 C -0.12 -0.95 2.49 -90.62 -0.23 -1.17 16 3 C -0.16 -1.28 8.46 37.16 0.31 -0.96 16 4 C 0.13 1.26 0.56 -90.62 -0.05 1.21 16 5 C -0.15 -1.40 7.94 37.16 0.30 -1.10 16 6 O -0.55 -5.48 12.38 -35.23 -0.44 -5.92 16 7 C 0.09 1.04 4.84 -4.04 -0.02 1.02 16 8 N -1.11 -15.02 5.72 -10.61 -0.06 -15.08 16 9 S 2.69 47.60 5.73 -107.50 -0.62 46.99 16 10 O -0.97 -19.79 17.27 -57.17 -0.99 -20.77 16 11 O -0.97 -18.64 16.73 -57.17 -0.96 -19.60 16 12 C -0.63 -12.67 5.94 -39.66 -0.24 -12.91 16 13 C -0.16 -3.15 9.53 -39.29 -0.37 -3.52 16 14 C -0.09 -1.86 10.02 -39.66 -0.40 -2.26 16 15 C -0.20 -4.51 7.18 -38.87 -0.28 -4.79 16 16 C 0.07 1.79 5.10 -106.82 -0.55 1.24 16 17 C -0.44 -11.51 9.57 -37.74 -0.36 -11.87 16 18 H 0.10 2.57 8.06 -52.49 -0.42 2.15 16 19 C 0.08 2.12 5.40 -17.34 -0.09 2.03 16 20 N -0.80 -20.48 13.93 55.55 0.77 -19.70 16 21 Si 0.91 19.97 24.52 -169.99 -4.17 15.80 16 22 H -0.27 -5.64 6.71 56.52 0.38 -5.26 16 23 H -0.29 -6.08 7.11 56.52 0.40 -5.68 16 24 H -0.24 -5.56 6.86 56.52 0.39 -5.17 16 25 C -0.10 -2.30 9.26 -38.87 -0.36 -2.66 16 26 H 0.06 0.45 6.35 -51.93 -0.33 0.12 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.47 7.82 -51.93 -0.41 0.07 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.51 6.56 -51.93 -0.34 0.17 16 32 H 0.06 0.57 6.35 -51.93 -0.33 0.24 16 33 H 0.06 0.66 6.60 -51.93 -0.34 0.31 16 34 H 0.07 0.61 6.34 -51.93 -0.33 0.28 16 35 H 0.08 0.70 6.57 -51.93 -0.34 0.36 16 36 H 0.38 2.72 9.05 45.56 0.41 3.13 16 37 H 0.08 0.87 7.75 -51.93 -0.40 0.47 16 38 H 0.08 0.92 6.35 -51.93 -0.33 0.60 16 39 H 0.42 5.10 7.08 -34.46 -0.24 4.85 16 40 H 0.11 1.92 7.59 -52.49 -0.40 1.52 16 41 H 0.10 1.76 8.06 -52.48 -0.42 1.33 16 42 H 0.11 2.37 4.73 -52.49 -0.25 2.12 16 43 H 0.29 6.66 8.30 -40.82 -0.34 6.32 16 44 H 0.12 2.61 7.60 -52.49 -0.40 2.21 16 LS Contribution 357.44 15.07 5.39 5.39 Total: -1.00 -30.82 357.44 -8.39 -39.21 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -5.31 Total: 10.19 kcal Atomic # 6 Polarization: -34.49 SS G_CDS: -2.01 Total: -36.51 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: 0.71 Total: -34.78 kcal Atomic # 8 Polarization: -43.91 SS G_CDS: -2.38 Total: -46.29 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.17 Total: 15.80 kcal Atomic # 16 Polarization: 47.60 SS G_CDS: -0.62 Total: 46.99 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.82 -8.39 -39.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619485810.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.086 kcal (2) G-P(sol) polarization free energy of solvation -30.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds