Wall clock time and date at job start Tue Mar 31 2020 14:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47282 * 2 1 4 4 C 1.52998 * 109.47640 * 120.00716 * 2 1 3 5 5 C 1.53004 * 109.46861 * 304.99760 * 4 2 1 6 6 O 1.42902 * 109.47258 * 64.99521 * 4 2 1 7 7 C 1.52996 * 109.47148 * 184.99896 * 4 2 1 8 8 N 1.46502 * 109.47114 * 179.97438 * 7 4 2 9 9 S 1.65596 * 120.00190 * 164.99773 * 8 7 4 10 10 O 1.42102 * 106.40318 * 178.54258 * 9 8 7 11 11 O 1.42104 * 106.40275 * 311.45808 * 9 8 7 12 12 C 1.76197 * 107.21758 * 64.99850 * 9 8 7 13 13 C 1.38656 * 119.87912 * 269.72587 * 12 9 8 14 14 C 1.38614 * 120.50264 * 179.72360 * 13 12 9 15 15 C 1.37635 * 120.24778 * 0.55358 * 14 13 12 16 16 C 1.40700 * 119.74383 * 359.72439 * 15 14 13 17 17 C 1.41401 * 120.24244 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99928 * 150.20922 * 17 16 15 19 19 C 1.39939 * 120.00124 * 330.20662 * 17 16 15 20 20 N 1.30823 * 120.00208 * 161.73548 * 19 17 16 21 21 Si 1.86800 * 120.00076 * 341.73946 * 19 17 16 22 22 H 1.48504 * 109.47548 * 95.40681 * 21 19 17 23 23 H 1.48499 * 109.47524 * 215.40815 * 21 19 17 24 24 H 1.48505 * 109.47117 * 335.40899 * 21 19 17 25 25 C 1.37604 * 119.87380 * 90.00521 * 12 9 8 26 26 H 1.09004 * 109.46681 * 299.99698 * 1 2 3 27 27 H 1.08997 * 109.47740 * 59.99379 * 1 2 3 28 28 H 1.09002 * 109.47412 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46681 * 240.00302 * 2 1 3 30 30 H 1.08997 * 109.47547 * 300.00477 * 3 2 1 31 31 H 1.08997 * 109.46670 * 60.00679 * 3 2 1 32 32 H 1.09000 * 109.47343 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.46877 * 180.02562 * 5 4 2 34 34 H 1.08993 * 109.46780 * 59.99670 * 5 4 2 35 35 H 1.09003 * 109.46714 * 299.99912 * 5 4 2 36 36 H 0.96700 * 113.99557 * 59.99939 * 6 4 2 37 37 H 1.09001 * 109.47179 * 299.99195 * 7 4 2 38 38 H 1.08994 * 109.47853 * 59.99860 * 7 4 2 39 39 H 0.97000 * 120.00074 * 344.99555 * 8 7 4 40 40 H 1.08000 * 119.74739 * 0.02562 * 13 12 9 41 41 H 1.08003 * 119.87536 * 180.25861 * 14 13 12 42 42 H 1.07995 * 120.12935 * 179.71024 * 15 14 13 43 43 H 0.97003 * 120.00218 * 180.02562 * 20 19 17 44 44 H 1.07992 * 120.12782 * 359.97206 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.4300 -0.0765 2.4953 6 8 1.6620 -2.0983 1.1918 7 6 3.5648 -0.6134 1.3134 8 7 4.0532 -1.3036 2.5098 9 16 5.6608 -1.6742 2.6537 10 8 5.8168 -2.2987 3.9206 11 8 6.0415 -2.2907 1.4312 12 6 6.5417 -0.1506 2.7381 13 6 7.0001 0.4476 1.5742 14 6 7.6896 1.6491 1.6251 15 6 7.9366 2.2560 2.8355 16 6 7.4812 1.6551 4.0235 17 6 7.7286 2.2698 5.2726 18 1 7.0358 2.1308 6.0894 19 6 8.8711 3.0580 5.4506 20 7 8.9340 3.9032 6.4472 21 14 10.3063 2.9036 4.2650 22 1 10.1941 3.9460 3.2132 23 1 11.5813 3.0825 5.0051 24 1 10.2847 1.5595 3.6340 25 6 6.7773 0.4382 3.9593 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8932 -0.5138 -0.8901 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9562 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.7938 -0.5901 3.3852 34 1 0.3438 -0.1533 2.4494 35 1 1.7185 0.9738 2.5389 36 1 2.0141 -2.5712 0.4253 37 1 3.9994 -1.0729 0.4257 38 1 3.8533 0.4368 1.3572 39 1 3.4350 -1.5435 3.2177 40 1 6.8143 -0.0236 0.6204 41 1 8.0384 2.1082 0.7119 42 1 8.4780 3.1896 2.8733 43 1 9.7258 4.4499 6.5703 44 1 6.4229 -0.0315 4.8649 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619485810.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:07 Heat of formation + Delta-G solvation = -145.124402 kcal Electronic energy + Delta-G solvation = -26676.134744 eV Core-core repulsion = 22911.618153 eV Total energy + Delta-G solvation = -3764.516592 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.29773 -39.68942 -38.28926 -36.93979 -35.65691 -35.45619 -35.23126 -32.54785 -31.89372 -30.40516 -28.54372 -27.26049 -26.85629 -24.10834 -23.59854 -22.68338 -20.81468 -20.28841 -19.67207 -18.67124 -18.09967 -17.92473 -17.11912 -16.87480 -16.64831 -16.33629 -15.89871 -15.66098 -15.42872 -15.00041 -14.81410 -14.68602 -14.06513 -13.89814 -13.70017 -13.58838 -13.56495 -13.39225 -13.32037 -13.19936 -13.09219 -12.89525 -12.87762 -12.71264 -12.55022 -12.38952 -12.12129 -12.02685 -11.79683 -11.69598 -11.56406 -11.27225 -11.09035 -10.80639 -10.32126 -10.00574 -9.69489 -8.97701 -6.60576 -0.55281 0.17263 0.64302 1.19926 1.35378 1.42281 2.02273 2.08762 2.41401 2.74171 3.28450 3.31710 3.45755 3.66544 3.77233 3.94200 4.17175 4.24208 4.32845 4.36923 4.43968 4.46325 4.62057 4.72572 4.75663 4.82126 4.86112 4.90856 4.97399 5.05546 5.06570 5.07990 5.11951 5.23454 5.30231 5.33432 5.42785 5.51257 5.59208 5.62033 5.75547 5.98484 6.06445 6.23508 6.57388 6.68587 6.89841 8.10583 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.016623 B = 0.003756 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.984194 B = 7453.142457 C = 7997.292488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.113 4.113 3 C -0.160 4.160 4 C 0.138 3.862 5 C -0.152 4.152 6 O -0.564 6.564 7 C 0.079 3.921 8 N -1.099 6.099 9 S 2.718 3.282 10 O -0.998 6.998 11 O -0.980 6.980 12 C -0.632 4.632 13 C -0.141 4.141 14 C -0.094 4.094 15 C -0.204 4.204 16 C 0.055 3.945 17 C -0.485 4.485 18 H 0.061 0.939 19 C 0.050 3.950 20 N -0.841 5.841 21 Si 0.956 3.044 22 H -0.246 1.246 23 H -0.275 1.275 24 H -0.256 1.256 25 C -0.123 4.123 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.388 0.612 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.424 0.576 40 H 0.145 0.855 41 H 0.145 0.855 42 H 0.109 0.891 43 H 0.296 0.704 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.109 -4.401 -15.002 20.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.133 4.133 3 C -0.217 4.217 4 C 0.096 3.904 5 C -0.209 4.209 6 O -0.372 6.372 7 C -0.047 4.047 8 N -0.862 5.862 9 S 2.810 3.190 10 O -0.989 6.989 11 O -0.970 6.970 12 C -0.721 4.721 13 C -0.161 4.161 14 C -0.113 4.113 15 C -0.223 4.223 16 C 0.052 3.948 17 C -0.514 4.514 18 H 0.079 0.921 19 C -0.166 4.166 20 N -0.467 5.467 21 Si 0.778 3.222 22 H -0.171 1.171 23 H -0.201 1.201 24 H -0.180 1.180 25 C -0.144 4.144 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.105 0.895 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.238 0.762 37 H 0.109 0.891 38 H 0.102 0.898 39 H 0.261 0.739 40 H 0.163 0.837 41 H 0.163 0.837 42 H 0.127 0.873 43 H 0.107 0.893 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -12.840 -4.843 -14.354 19.858 hybrid contribution 0.896 0.801 0.329 1.247 sum -11.944 -4.042 -14.024 18.859 Atomic orbital electron populations 1.21808 0.93927 1.02129 1.02105 1.21706 0.97350 0.97039 0.97163 1.22044 1.01537 0.95323 1.02776 1.21309 0.90036 0.82509 0.96549 1.21948 1.02109 1.00853 0.95980 1.86527 1.76836 1.21952 1.51849 1.22390 0.97151 0.98241 0.86907 1.55127 1.25333 1.75962 1.29792 1.00866 0.72721 0.73302 0.72135 1.93518 1.85972 1.75233 1.44135 1.93498 1.82713 1.74117 1.46695 1.30430 1.18335 1.23667 0.99644 1.20620 1.02537 0.96871 0.96100 1.21173 0.97487 0.95307 0.97312 1.21503 1.06671 1.00959 0.93188 1.17932 0.92406 0.91234 0.93233 1.19492 1.08150 1.25946 0.97785 0.92125 1.26786 1.01810 0.91030 0.96956 1.69702 1.30590 1.16682 1.29723 0.85634 0.76705 0.81168 0.78669 1.17093 1.20099 1.18020 1.20876 1.03197 0.94971 0.95368 0.92430 0.91944 0.92453 0.89533 0.91403 0.92202 0.92140 0.92589 0.90581 0.90162 0.76234 0.89069 0.89840 0.73877 0.83748 0.83724 0.87341 0.89319 0.87056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 8.60 71.98 0.62 -1.16 16 2 C -0.11 -1.49 2.49 -10.80 -0.03 -1.51 16 3 C -0.16 -2.18 8.46 71.98 0.61 -1.57 16 4 C 0.14 2.31 0.56 -10.79 -0.01 2.31 16 5 C -0.15 -2.69 7.94 71.98 0.57 -2.12 16 6 O -0.56 -9.79 12.38 -148.98 -1.84 -11.63 16 7 C 0.08 1.60 4.84 86.38 0.42 2.02 16 8 N -1.10 -27.62 5.72 -187.50 -1.07 -28.69 16 9 S 2.72 91.53 5.73 -56.49 -0.32 91.21 16 10 O -1.00 -40.39 17.27 -128.00 -2.21 -42.60 16 11 O -0.98 -34.59 16.73 -128.00 -2.14 -36.73 16 12 C -0.63 -24.62 5.94 22.22 0.13 -24.49 16 13 C -0.14 -5.02 9.53 22.46 0.21 -4.81 16 14 C -0.09 -3.47 10.02 22.22 0.22 -3.24 16 15 C -0.20 -8.99 7.18 22.73 0.16 -8.83 16 16 C 0.06 2.75 5.10 -21.29 -0.11 2.64 16 17 C -0.48 -26.62 9.57 23.46 0.22 -26.40 16 18 H 0.06 3.59 8.06 -2.91 -0.02 3.56 16 19 C 0.05 2.60 5.40 85.26 0.46 3.06 16 20 N -0.84 -44.93 13.93 21.82 0.30 -44.63 16 21 Si 0.96 40.96 24.52 68.60 1.68 42.64 16 22 H -0.25 -9.59 6.71 99.48 0.67 -8.92 16 23 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 24 H -0.26 -11.39 6.86 99.48 0.68 -10.71 16 25 C -0.12 -5.67 9.26 22.73 0.21 -5.46 16 26 H 0.06 0.74 6.35 -2.38 -0.02 0.73 16 27 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.06 0.76 7.82 -2.39 -0.02 0.74 16 29 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.07 0.79 8.14 -2.39 -0.02 0.78 16 31 H 0.06 0.85 6.56 -2.39 -0.02 0.83 16 32 H 0.06 0.88 6.35 -2.39 -0.02 0.86 16 33 H 0.06 1.08 6.60 -2.39 -0.02 1.06 16 34 H 0.08 1.23 6.34 -2.39 -0.02 1.21 16 35 H 0.08 1.36 6.57 -2.39 -0.02 1.34 16 36 H 0.39 4.49 9.05 -74.06 -0.67 3.82 16 37 H 0.09 1.66 7.75 -2.39 -0.02 1.64 16 38 H 0.08 1.68 6.35 -2.39 -0.02 1.66 16 39 H 0.42 9.82 7.08 -96.75 -0.69 9.13 16 40 H 0.14 4.23 7.59 -2.91 -0.02 4.21 16 41 H 0.15 4.14 8.06 -2.91 -0.02 4.11 16 42 H 0.11 4.68 4.73 -2.91 -0.01 4.67 16 43 H 0.30 14.13 8.30 -92.71 -0.77 13.36 16 44 H 0.11 5.15 7.60 -2.91 -0.02 5.12 16 Total: -1.00 -67.35 357.44 -2.28 -69.63 By element: Atomic # 1 Polarization: 30.74 SS G_CDS: -0.38 Total: 30.37 kcal Atomic # 6 Polarization: -73.26 SS G_CDS: 3.70 Total: -69.56 kcal Atomic # 7 Polarization: -72.55 SS G_CDS: -0.77 Total: -73.32 kcal Atomic # 8 Polarization: -84.77 SS G_CDS: -6.20 Total: -90.97 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 1.68 Total: 42.64 kcal Atomic # 16 Polarization: 91.53 SS G_CDS: -0.32 Total: 91.21 kcal Total: -67.35 -2.28 -69.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619485810.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.493 kcal (2) G-P(sol) polarization free energy of solvation -67.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds