Wall clock time and date at job start Tue Mar 31 2020 14:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47185 * 2 1 4 4 C 1.53001 * 109.47556 * 120.00384 * 2 1 3 5 5 C 1.53002 * 109.46721 * 299.99853 * 4 2 1 6 6 O 1.42898 * 109.47442 * 179.97438 * 4 2 1 7 7 C 1.52997 * 109.46944 * 59.99526 * 4 2 1 8 8 N 1.46502 * 109.47300 * 185.00132 * 7 4 2 9 9 S 1.65597 * 120.00499 * 165.00283 * 8 7 4 10 10 O 1.42097 * 106.40398 * 178.54507 * 9 8 7 11 11 O 1.42100 * 106.39837 * 311.46482 * 9 8 7 12 12 C 1.76197 * 107.21756 * 65.00240 * 9 8 7 13 13 C 1.38666 * 119.87498 * 269.73046 * 12 9 8 14 14 C 1.38610 * 120.49978 * 179.72185 * 13 12 9 15 15 C 1.37640 * 120.24984 * 0.55126 * 14 13 12 16 16 C 1.40699 * 119.74251 * 359.72522 * 15 14 13 17 17 C 1.41395 * 120.24150 * 180.02562 * 16 15 14 18 18 H 1.08007 * 119.99349 * 150.21685 * 17 16 15 19 19 C 1.39944 * 120.00249 * 330.22358 * 17 16 15 20 20 N 1.30822 * 120.00299 * 161.72728 * 19 17 16 21 21 Si 1.86803 * 119.99716 * 341.72193 * 19 17 16 22 22 H 1.48497 * 109.46996 * 95.41590 * 21 19 17 23 23 H 1.48508 * 109.46815 * 215.41167 * 21 19 17 24 24 H 1.48499 * 109.47211 * 335.41326 * 21 19 17 25 25 C 1.37593 * 119.87719 * 90.00090 * 12 9 8 26 26 H 1.08998 * 109.46489 * 299.99686 * 1 2 3 27 27 H 1.08988 * 109.47242 * 59.99611 * 1 2 3 28 28 H 1.08997 * 109.47012 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46938 * 240.00455 * 2 1 3 30 30 H 1.09001 * 109.46928 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47210 * 300.00202 * 3 2 1 32 32 H 1.09003 * 109.46811 * 60.00378 * 3 2 1 33 33 H 1.09002 * 109.47042 * 179.97438 * 5 4 2 34 34 H 1.08994 * 109.47505 * 299.99459 * 5 4 2 35 35 H 1.08998 * 109.47013 * 60.00051 * 5 4 2 36 36 H 0.96695 * 113.99831 * 300.00002 * 6 4 2 37 37 H 1.08998 * 109.47585 * 305.00089 * 7 4 2 38 38 H 1.08998 * 109.47143 * 65.00623 * 7 4 2 39 39 H 0.97009 * 119.99676 * 345.00542 * 8 7 4 40 40 H 1.08001 * 119.74524 * 359.97438 * 13 12 9 41 41 H 1.08007 * 119.87442 * 180.25128 * 14 13 12 42 42 H 1.07999 * 120.12750 * 179.74612 * 15 14 13 43 43 H 0.96998 * 120.00142 * 179.97438 * 20 19 17 44 44 H 1.07990 * 120.12784 * 359.97438 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.5302 -0.0001 2.4984 6 8 3.4691 -0.7218 1.2488 7 6 1.5301 -2.1638 1.2491 8 7 1.9177 -2.8189 2.5009 9 16 1.2003 -4.2432 2.9468 10 8 1.8083 -4.6329 4.1706 11 8 -0.1999 -4.0499 2.8015 12 6 1.6616 -5.4553 1.7540 13 6 0.8733 -5.6539 0.6306 14 6 1.2271 -6.5999 -0.3187 15 6 2.3611 -7.3613 -0.1498 16 6 3.1655 -7.1724 0.9890 17 6 4.3331 -7.9484 1.1728 18 1 5.1737 -7.5393 1.7138 19 6 4.3996 -9.2463 0.6538 20 7 5.5599 -9.8306 0.4997 21 14 2.8314 -10.1447 0.1813 22 1 2.5777 -9.9672 -1.2710 23 1 2.9789 -11.5909 0.4849 24 1 1.6912 -9.5903 0.9544 25 6 2.7997 -6.2050 1.9435 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8898 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6768 1.9563 0.8901 33 1 1.8932 -0.5142 3.3884 34 1 1.8935 1.0275 2.4985 35 1 0.4402 -0.0001 2.4985 36 1 3.8621 -1.1637 0.4838 37 1 0.4438 -2.1651 1.1596 38 1 1.9647 -2.7028 0.4073 39 1 2.5946 -2.4182 3.0686 40 1 -0.0209 -5.0642 0.4924 41 1 0.6078 -6.7434 -1.1920 42 1 2.6327 -8.1006 -0.8888 43 1 5.6060 -10.7303 0.1403 44 1 3.4100 -6.0515 2.8210 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619485811.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:11 Heat of formation + Delta-G solvation = -121.598630 kcal Electronic energy + Delta-G solvation = -26609.630573 eV Core-core repulsion = 22846.134135 eV Total energy + Delta-G solvation = -3763.496438 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.52656 -37.95654 -36.76492 -35.41176 -34.52446 -34.44409 -33.81364 -30.76420 -30.20332 -29.62333 -27.73889 -26.21871 -25.41695 -22.80470 -22.42086 -20.94543 -19.77741 -19.14785 -18.08275 -17.40826 -16.90014 -16.33857 -16.00757 -15.48000 -15.12378 -15.01600 -14.84049 -14.52821 -14.29579 -13.81805 -13.24596 -13.18638 -12.96003 -12.90562 -12.76253 -12.44174 -12.27110 -12.09248 -11.90335 -11.75577 -11.72712 -11.69689 -11.62786 -11.49089 -11.46478 -11.09028 -11.06787 -10.82644 -10.57695 -10.38732 -10.05286 -9.90707 -9.81760 -9.44206 -9.18117 -8.31664 -7.91850 -7.11877 -4.67507 0.89229 1.87375 2.37678 2.96560 3.09202 3.18216 3.41122 3.82679 4.04631 4.10439 4.28910 4.38204 4.50178 4.64487 4.88018 5.00141 5.03083 5.11780 5.25985 5.33369 5.45354 5.54289 5.63258 5.68886 5.70815 5.72154 5.76976 5.86263 5.89251 5.96470 6.00738 6.11451 6.16541 6.23511 6.42283 6.54506 6.82875 7.02199 7.15763 7.16384 7.35007 7.52985 7.58308 7.73847 8.14885 8.38949 8.58127 9.89932 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.017886 B = 0.003575 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.100512 B = 7830.475048 C = 8121.305223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.120 4.120 3 C -0.143 4.143 4 C 0.132 3.868 5 C -0.144 4.144 6 O -0.554 6.554 7 C 0.091 3.909 8 N -1.113 6.113 9 S 2.690 3.310 10 O -0.968 6.968 11 O -0.973 6.973 12 C -0.625 4.625 13 C -0.161 4.161 14 C -0.092 4.092 15 C -0.199 4.199 16 C 0.073 3.927 17 C -0.443 4.443 18 H 0.096 0.904 19 C 0.084 3.916 20 N -0.799 5.799 21 Si 0.906 3.094 22 H -0.268 1.268 23 H -0.286 1.286 24 H -0.243 1.243 25 C -0.101 4.101 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.378 0.622 37 H 0.089 0.911 38 H 0.071 0.929 39 H 0.418 0.582 40 H 0.111 0.889 41 H 0.103 0.897 42 H 0.106 0.894 43 H 0.288 0.712 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.741 16.615 -2.817 18.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.140 4.140 3 C -0.200 4.200 4 C 0.090 3.910 5 C -0.201 4.201 6 O -0.360 6.360 7 C -0.036 4.036 8 N -0.873 5.873 9 S 2.784 3.216 10 O -0.959 6.959 11 O -0.963 6.963 12 C -0.716 4.716 13 C -0.182 4.182 14 C -0.111 4.111 15 C -0.218 4.218 16 C 0.069 3.931 17 C -0.471 4.471 18 H 0.114 0.886 19 C -0.136 4.136 20 N -0.422 5.422 21 Si 0.732 3.268 22 H -0.194 1.194 23 H -0.213 1.213 24 H -0.166 1.166 25 C -0.122 4.122 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.226 0.774 37 H 0.107 0.893 38 H 0.089 0.911 39 H 0.253 0.747 40 H 0.129 0.871 41 H 0.121 0.879 42 H 0.124 0.876 43 H 0.099 0.901 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.298 16.542 -1.661 18.157 hybrid contribution 0.260 -1.150 -1.374 1.810 sum -7.038 15.392 -3.035 17.195 Atomic orbital electron populations 1.22023 0.94391 1.02661 1.02303 1.21739 0.96840 0.97481 0.97892 1.21800 1.01647 0.95014 1.01579 1.21349 0.81237 0.92622 0.95830 1.21856 1.01256 1.00618 0.96361 1.86538 1.18477 1.80981 1.49962 1.22047 1.01365 0.93845 0.86364 1.55465 1.58011 1.41060 1.32766 1.01696 0.73391 0.72719 0.73767 1.93558 1.77854 1.82046 1.42422 1.93514 1.30187 1.85589 1.86984 1.29968 1.07177 1.18845 1.15657 1.20053 0.99795 1.03100 0.95211 1.20699 0.96386 0.96215 0.97822 1.21299 0.98784 1.03070 0.98665 1.17792 0.92304 0.92623 0.90349 1.19531 0.99668 0.97861 1.30011 0.88647 1.26160 0.97845 0.98013 0.91589 1.69675 1.26285 1.14731 1.31542 0.86374 0.82921 0.77612 0.79883 1.19421 1.21278 1.16641 1.20859 0.94731 0.98389 0.98228 0.91945 0.92346 0.91760 0.90601 0.92012 0.92897 0.92357 0.91632 0.91491 0.90638 0.77370 0.89269 0.91113 0.74672 0.87132 0.87933 0.87626 0.90144 0.86245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.20 8.50 37.16 0.32 -0.89 16 2 C -0.12 -0.96 2.47 -90.62 -0.22 -1.18 16 3 C -0.14 -1.07 8.70 37.16 0.32 -0.75 16 4 C 0.13 1.26 0.52 -90.62 -0.05 1.21 16 5 C -0.14 -1.35 7.91 37.16 0.29 -1.06 16 6 O -0.55 -5.57 12.11 -35.23 -0.43 -6.00 16 7 C 0.09 1.04 5.15 -4.04 -0.02 1.02 16 8 N -1.11 -14.95 5.40 -10.61 -0.06 -15.01 16 9 S 2.69 47.43 5.74 -107.50 -0.62 46.81 16 10 O -0.97 -19.71 17.27 -57.17 -0.99 -20.69 16 11 O -0.97 -18.50 16.73 -57.17 -0.96 -19.46 16 12 C -0.63 -12.71 5.94 -39.66 -0.24 -12.94 16 13 C -0.16 -3.17 9.53 -39.29 -0.37 -3.54 16 14 C -0.09 -1.87 10.02 -39.66 -0.40 -2.27 16 15 C -0.20 -4.54 7.18 -38.87 -0.28 -4.82 16 16 C 0.07 1.79 5.11 -106.82 -0.55 1.25 16 17 C -0.44 -11.54 9.57 -37.74 -0.36 -11.90 16 18 H 0.10 2.58 8.06 -52.48 -0.42 2.16 16 19 C 0.08 2.13 5.40 -17.34 -0.09 2.03 16 20 N -0.80 -20.52 13.93 55.55 0.77 -19.75 16 21 Si 0.91 20.01 24.52 -169.99 -4.17 15.84 16 22 H -0.27 -5.65 6.71 56.52 0.38 -5.27 16 23 H -0.29 -6.09 7.11 56.52 0.40 -5.69 16 24 H -0.24 -5.57 6.86 56.52 0.39 -5.18 16 25 C -0.10 -2.30 9.26 -38.87 -0.36 -2.66 16 26 H 0.06 0.46 6.43 -51.93 -0.33 0.12 16 27 H 0.06 0.40 8.14 -51.94 -0.42 -0.03 16 28 H 0.06 0.53 6.32 -51.93 -0.33 0.20 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.49 7.68 -51.93 -0.40 0.09 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.43 6.43 -51.93 -0.33 0.09 16 33 H 0.06 0.66 6.89 -51.93 -0.36 0.30 16 34 H 0.07 0.58 6.43 -51.93 -0.33 0.24 16 35 H 0.07 0.65 6.43 -51.93 -0.33 0.32 16 36 H 0.38 2.90 9.04 45.56 0.41 3.32 16 37 H 0.09 1.00 5.78 -51.93 -0.30 0.70 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.42 5.11 7.58 -34.47 -0.26 4.85 16 40 H 0.11 1.92 7.59 -52.49 -0.40 1.53 16 41 H 0.10 1.76 8.06 -52.48 -0.42 1.34 16 42 H 0.11 2.37 4.73 -52.49 -0.25 2.13 16 43 H 0.29 6.67 8.30 -40.82 -0.34 6.33 16 44 H 0.12 2.63 7.60 -52.49 -0.40 2.23 16 LS Contribution 357.54 15.07 5.39 5.39 Total: -1.00 -30.75 357.54 -8.38 -39.13 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -5.32 Total: 10.24 kcal Atomic # 6 Polarization: -34.50 SS G_CDS: -2.01 Total: -36.50 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: 0.72 Total: -34.76 kcal Atomic # 8 Polarization: -43.78 SS G_CDS: -2.37 Total: -46.15 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -4.17 Total: 15.84 kcal Atomic # 16 Polarization: 47.43 SS G_CDS: -0.62 Total: 46.81 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.75 -8.38 -39.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619485811.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.466 kcal (2) G-P(sol) polarization free energy of solvation -30.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds