Wall clock time and date at job start Tue Mar 31 2020 14:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47185 * 2 1 4 4 C 1.53001 * 109.47556 * 120.00384 * 2 1 3 5 5 C 1.53002 * 109.46721 * 299.99853 * 4 2 1 6 6 O 1.42898 * 109.47442 * 179.97438 * 4 2 1 7 7 C 1.52997 * 109.46944 * 59.99526 * 4 2 1 8 8 N 1.46502 * 109.47300 * 185.00132 * 7 4 2 9 9 S 1.65597 * 120.00499 * 165.00283 * 8 7 4 10 10 O 1.42097 * 106.40398 * 178.54507 * 9 8 7 11 11 O 1.42100 * 106.39837 * 311.46482 * 9 8 7 12 12 C 1.76197 * 107.21756 * 65.00240 * 9 8 7 13 13 C 1.38666 * 119.87498 * 269.73046 * 12 9 8 14 14 C 1.38610 * 120.49978 * 179.72185 * 13 12 9 15 15 C 1.37640 * 120.24984 * 0.55126 * 14 13 12 16 16 C 1.40699 * 119.74251 * 359.72522 * 15 14 13 17 17 C 1.41395 * 120.24150 * 180.02562 * 16 15 14 18 18 H 1.08007 * 119.99349 * 150.21685 * 17 16 15 19 19 C 1.39944 * 120.00249 * 330.22358 * 17 16 15 20 20 N 1.30822 * 120.00299 * 161.72728 * 19 17 16 21 21 Si 1.86803 * 119.99716 * 341.72193 * 19 17 16 22 22 H 1.48497 * 109.46996 * 95.41590 * 21 19 17 23 23 H 1.48508 * 109.46815 * 215.41167 * 21 19 17 24 24 H 1.48499 * 109.47211 * 335.41326 * 21 19 17 25 25 C 1.37593 * 119.87719 * 90.00090 * 12 9 8 26 26 H 1.08998 * 109.46489 * 299.99686 * 1 2 3 27 27 H 1.08988 * 109.47242 * 59.99611 * 1 2 3 28 28 H 1.08997 * 109.47012 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46938 * 240.00455 * 2 1 3 30 30 H 1.09001 * 109.46928 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47210 * 300.00202 * 3 2 1 32 32 H 1.09003 * 109.46811 * 60.00378 * 3 2 1 33 33 H 1.09002 * 109.47042 * 179.97438 * 5 4 2 34 34 H 1.08994 * 109.47505 * 299.99459 * 5 4 2 35 35 H 1.08998 * 109.47013 * 60.00051 * 5 4 2 36 36 H 0.96695 * 113.99831 * 300.00002 * 6 4 2 37 37 H 1.08998 * 109.47585 * 305.00089 * 7 4 2 38 38 H 1.08998 * 109.47143 * 65.00623 * 7 4 2 39 39 H 0.97009 * 119.99676 * 345.00542 * 8 7 4 40 40 H 1.08001 * 119.74524 * 359.97438 * 13 12 9 41 41 H 1.08007 * 119.87442 * 180.25128 * 14 13 12 42 42 H 1.07999 * 120.12750 * 179.74612 * 15 14 13 43 43 H 0.96998 * 120.00142 * 179.97438 * 20 19 17 44 44 H 1.07990 * 120.12784 * 359.97438 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.5302 -0.0001 2.4984 6 8 3.4691 -0.7218 1.2488 7 6 1.5301 -2.1638 1.2491 8 7 1.9177 -2.8189 2.5009 9 16 1.2003 -4.2432 2.9468 10 8 1.8083 -4.6329 4.1706 11 8 -0.1999 -4.0499 2.8015 12 6 1.6616 -5.4553 1.7540 13 6 0.8733 -5.6539 0.6306 14 6 1.2271 -6.5999 -0.3187 15 6 2.3611 -7.3613 -0.1498 16 6 3.1655 -7.1724 0.9890 17 6 4.3331 -7.9484 1.1728 18 1 5.1737 -7.5393 1.7138 19 6 4.3996 -9.2463 0.6538 20 7 5.5599 -9.8306 0.4997 21 14 2.8314 -10.1447 0.1813 22 1 2.5777 -9.9672 -1.2710 23 1 2.9789 -11.5909 0.4849 24 1 1.6912 -9.5903 0.9544 25 6 2.7997 -6.2050 1.9435 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8898 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6768 1.9563 0.8901 33 1 1.8932 -0.5142 3.3884 34 1 1.8935 1.0275 2.4985 35 1 0.4402 -0.0001 2.4985 36 1 3.8621 -1.1637 0.4838 37 1 0.4438 -2.1651 1.1596 38 1 1.9647 -2.7028 0.4073 39 1 2.5946 -2.4182 3.0686 40 1 -0.0209 -5.0642 0.4924 41 1 0.6078 -6.7434 -1.1920 42 1 2.6327 -8.1006 -0.8888 43 1 5.6060 -10.7303 0.1403 44 1 3.4100 -6.0515 2.8210 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619485811.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:11 Heat of formation + Delta-G solvation = -145.308118 kcal Electronic energy + Delta-G solvation = -26610.658693 eV Core-core repulsion = 22846.134135 eV Total energy + Delta-G solvation = -3764.524558 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.28952 -39.69374 -38.29117 -36.94314 -35.66031 -35.46938 -35.21575 -32.55330 -31.89912 -30.39608 -28.40701 -27.27157 -26.97786 -24.10906 -23.56259 -22.68656 -20.83590 -20.29797 -19.66076 -18.65593 -18.11063 -17.88096 -17.05451 -17.00826 -16.65309 -16.26100 -15.94149 -15.64943 -15.40180 -15.08042 -14.83728 -14.69160 -14.06390 -13.85154 -13.66410 -13.63225 -13.54928 -13.39638 -13.31435 -13.19124 -13.09107 -12.90560 -12.84163 -12.70303 -12.55409 -12.40507 -12.13233 -12.04584 -11.80563 -11.69933 -11.56973 -11.25459 -11.09152 -10.66826 -10.43905 -10.01130 -9.70016 -8.98100 -6.61048 -0.55246 0.16862 0.63845 1.19658 1.35133 1.42101 2.01873 2.08061 2.40720 2.73991 3.28420 3.34391 3.40474 3.69397 3.78575 3.93735 4.16887 4.28101 4.32570 4.36754 4.42685 4.44320 4.62457 4.73860 4.75154 4.82032 4.87275 4.90970 4.97768 5.05517 5.06852 5.10150 5.12307 5.24404 5.30802 5.33051 5.42345 5.52238 5.59865 5.61602 5.75083 5.98097 6.06818 6.23025 6.57000 6.68067 6.87261 8.10235 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.017886 B = 0.003575 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.100512 B = 7830.475048 C = 8121.305223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.116 4.116 3 C -0.141 4.141 4 C 0.136 3.864 5 C -0.150 4.150 6 O -0.566 6.566 7 C 0.080 3.920 8 N -1.099 6.099 9 S 2.717 3.283 10 O -0.998 6.998 11 O -0.979 6.979 12 C -0.633 4.633 13 C -0.141 4.141 14 C -0.094 4.094 15 C -0.204 4.204 16 C 0.055 3.945 17 C -0.485 4.485 18 H 0.060 0.940 19 C 0.049 3.951 20 N -0.841 5.841 21 Si 0.956 3.044 22 H -0.246 1.246 23 H -0.274 1.274 24 H -0.256 1.256 25 C -0.123 4.123 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.388 0.612 37 H 0.097 0.903 38 H 0.076 0.924 39 H 0.425 0.575 40 H 0.145 0.855 41 H 0.145 0.855 42 H 0.109 0.891 43 H 0.296 0.704 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.583 18.248 -4.421 21.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.135 4.135 3 C -0.198 4.198 4 C 0.094 3.906 5 C -0.207 4.207 6 O -0.374 6.374 7 C -0.046 4.046 8 N -0.862 5.862 9 S 2.809 3.191 10 O -0.988 6.988 11 O -0.969 6.969 12 C -0.721 4.721 13 C -0.162 4.162 14 C -0.113 4.113 15 C -0.224 4.224 16 C 0.052 3.948 17 C -0.514 4.514 18 H 0.078 0.922 19 C -0.166 4.166 20 N -0.467 5.467 21 Si 0.779 3.221 22 H -0.171 1.171 23 H -0.201 1.201 24 H -0.180 1.180 25 C -0.144 4.144 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.237 0.763 37 H 0.115 0.885 38 H 0.094 0.906 39 H 0.262 0.738 40 H 0.163 0.837 41 H 0.163 0.837 42 H 0.127 0.873 43 H 0.107 0.893 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -10.123 18.159 -3.292 21.050 hybrid contribution 1.018 -1.384 -0.859 1.921 sum -9.106 16.775 -4.151 19.534 Atomic orbital electron populations 1.22051 0.93935 1.02598 1.03005 1.21709 0.97160 0.97557 0.97091 1.21779 1.01191 0.94744 1.02103 1.21347 0.80999 0.91449 0.96787 1.21936 1.01910 1.00959 0.95897 1.86525 1.18879 1.81171 1.50804 1.22377 1.02087 0.94989 0.85192 1.55137 1.58023 1.39196 1.33835 1.00897 0.73004 0.72684 0.72528 1.93519 1.78369 1.82982 1.43945 1.93503 1.30715 1.85780 1.86876 1.30438 1.05970 1.19101 1.16564 1.20626 0.99830 1.01837 0.93889 1.21177 0.95732 0.95110 0.99273 1.21503 0.99341 1.03524 0.97996 1.17932 0.92331 0.93058 0.91489 1.19494 1.00054 0.99474 1.32361 0.92165 1.26798 1.00349 0.98068 0.91411 1.69700 1.27732 1.15641 1.33610 0.85626 0.79003 0.76976 0.80520 1.17077 1.20065 1.18025 1.20872 0.96071 0.99303 0.98180 0.91643 0.91371 0.92141 0.90040 0.92702 0.91955 0.92278 0.92570 0.90772 0.89735 0.76290 0.88468 0.90564 0.73759 0.83721 0.83714 0.87328 0.89302 0.87124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 8.50 71.98 0.61 -1.33 16 2 C -0.12 -1.53 2.47 -10.79 -0.03 -1.56 16 3 C -0.14 -1.76 8.70 71.98 0.63 -1.14 16 4 C 0.14 2.29 0.52 -10.79 -0.01 2.28 16 5 C -0.15 -2.50 7.91 71.98 0.57 -1.93 16 6 O -0.57 -10.42 12.11 -148.98 -1.80 -12.23 16 7 C 0.08 1.61 5.15 86.38 0.44 2.05 16 8 N -1.10 -27.50 5.40 -187.49 -1.01 -28.52 16 9 S 2.72 91.29 5.74 -56.49 -0.32 90.96 16 10 O -1.00 -40.24 17.27 -128.00 -2.21 -42.45 16 11 O -0.98 -34.39 16.73 -128.00 -2.14 -36.53 16 12 C -0.63 -24.68 5.94 22.22 0.13 -24.55 16 13 C -0.14 -5.06 9.53 22.46 0.21 -4.84 16 14 C -0.09 -3.48 10.02 22.22 0.22 -3.26 16 15 C -0.20 -9.03 7.18 22.73 0.16 -8.87 16 16 C 0.06 2.75 5.11 -21.29 -0.11 2.65 16 17 C -0.48 -26.72 9.57 23.46 0.22 -26.50 16 18 H 0.06 3.58 8.06 -2.91 -0.02 3.55 16 19 C 0.05 2.58 5.40 85.26 0.46 3.04 16 20 N -0.84 -45.03 13.93 21.83 0.30 -44.72 16 21 Si 0.96 41.03 24.52 68.60 1.68 42.71 16 22 H -0.25 -9.59 6.71 99.48 0.67 -8.92 16 23 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 24 H -0.26 -11.41 6.86 99.48 0.68 -10.72 16 25 C -0.12 -5.70 9.26 22.73 0.21 -5.49 16 26 H 0.06 0.76 6.43 -2.39 -0.02 0.75 16 27 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.06 0.79 6.32 -2.39 -0.02 0.77 16 29 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.05 0.77 7.68 -2.39 -0.02 0.75 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.06 0.73 6.43 -2.39 -0.02 0.71 16 33 H 0.06 1.03 6.89 -2.39 -0.02 1.02 16 34 H 0.07 1.12 6.43 -2.39 -0.02 1.11 16 35 H 0.08 1.24 6.43 -2.39 -0.02 1.22 16 36 H 0.39 5.32 9.04 -74.06 -0.67 4.65 16 37 H 0.10 1.85 5.78 -2.39 -0.01 1.84 16 38 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.43 9.84 7.58 -96.74 -0.73 9.11 16 40 H 0.15 4.24 7.59 -2.91 -0.02 4.22 16 41 H 0.15 4.15 8.06 -2.91 -0.02 4.13 16 42 H 0.11 4.70 4.73 -2.91 -0.01 4.68 16 43 H 0.30 14.16 8.30 -92.71 -0.77 13.39 16 44 H 0.11 5.15 7.60 -2.92 -0.02 5.13 16 Total: -1.00 -67.29 357.54 -2.19 -69.48 By element: Atomic # 1 Polarization: 31.15 SS G_CDS: -0.42 Total: 30.73 kcal Atomic # 6 Polarization: -73.17 SS G_CDS: 3.74 Total: -69.43 kcal Atomic # 7 Polarization: -72.53 SS G_CDS: -0.71 Total: -73.24 kcal Atomic # 8 Polarization: -85.05 SS G_CDS: -6.16 Total: -91.21 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 1.68 Total: 42.71 kcal Atomic # 16 Polarization: 91.29 SS G_CDS: -0.32 Total: 90.96 kcal Total: -67.29 -2.19 -69.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619485811.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.826 kcal (2) G-P(sol) polarization free energy of solvation -67.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds