Wall clock time and date at job start Tue Mar 31 2020 15:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.47016 * 2 1 4 4 H 1.08997 * 109.46728 * 305.00414 * 3 2 1 5 5 C 1.52997 * 109.46861 * 64.99913 * 3 2 1 6 6 C 1.52989 * 109.47328 * 185.00262 * 3 2 1 7 7 H 1.09005 * 109.47318 * 59.99663 * 6 3 2 8 8 O 1.42909 * 109.47198 * 299.99928 * 6 3 2 9 9 C 1.52999 * 109.47171 * 180.02562 * 6 3 2 10 10 N 1.46503 * 109.47152 * 184.99896 * 9 6 3 11 11 S 1.65602 * 120.00281 * 165.00008 * 10 9 6 12 12 O 1.42099 * 106.40358 * 178.54096 * 11 10 9 13 13 O 1.42108 * 106.39666 * 311.46200 * 11 10 9 14 14 C 1.76195 * 107.21730 * 64.99794 * 11 10 9 15 15 C 1.38654 * 119.87810 * 269.72885 * 14 11 10 16 16 C 1.38616 * 120.50570 * 179.71970 * 15 14 11 17 17 C 1.37643 * 120.24434 * 0.55807 * 16 15 14 18 18 C 1.40698 * 119.74251 * 359.72227 * 17 16 15 19 19 C 1.41395 * 120.24570 * 180.02562 * 18 17 16 20 20 H 1.07999 * 120.00343 * 204.36295 * 19 18 17 21 21 C 1.39950 * 119.99692 * 24.36347 * 19 18 17 22 22 N 1.30821 * 120.00325 * 17.87237 * 21 19 18 23 23 Si 1.86801 * 120.00069 * 197.87427 * 21 19 18 24 24 H 1.48506 * 109.46929 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47338 * 119.99488 * 23 21 19 26 26 H 1.48496 * 109.47239 * 240.00246 * 23 21 19 27 27 C 1.37597 * 119.87752 * 90.00230 * 14 11 10 28 28 H 1.08993 * 109.47428 * 60.00101 * 1 2 3 29 29 H 1.09003 * 109.46541 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.46870 * 299.99707 * 1 2 3 31 31 H 1.08997 * 109.47497 * 240.00413 * 2 1 3 32 32 H 1.09003 * 109.47542 * 119.99853 * 2 1 3 33 33 H 1.08998 * 109.47894 * 300.00283 * 5 3 2 34 34 H 1.08997 * 109.47564 * 60.00643 * 5 3 2 35 35 H 1.09001 * 109.46989 * 180.02562 * 5 3 2 36 36 H 0.96697 * 113.99799 * 300.00029 * 8 6 3 37 37 H 1.08996 * 109.47479 * 304.99681 * 9 6 3 38 38 H 1.08997 * 109.47333 * 65.00083 * 9 6 3 39 39 H 0.97001 * 119.99950 * 345.00247 * 10 9 6 40 40 H 1.07999 * 119.74985 * 0.02562 * 15 14 11 41 41 H 1.07998 * 119.88406 * 180.25594 * 16 15 14 42 42 H 1.07999 * 120.12903 * 179.70481 * 17 16 15 43 43 H 0.96997 * 120.00608 * 180.02562 * 22 21 19 44 44 H 1.08006 * 120.12493 * 359.97438 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 3.5647 1.4445 -0.1258 7 1 3.8531 0.9571 -1.0572 8 8 4.1346 0.7378 0.9779 9 6 4.0747 2.8870 -0.1251 10 7 5.5199 2.8941 -0.3650 11 16 6.2826 4.3027 -0.7853 12 8 7.6629 3.9894 -0.9116 13 8 5.5163 4.8757 -1.8360 14 6 6.1448 5.3998 0.5865 15 6 5.0613 6.2602 0.6767 16 6 4.9369 7.1246 1.7531 17 6 5.8962 7.1455 2.7400 18 6 7.0030 6.2810 2.6559 19 6 7.9945 6.2932 3.6639 20 1 8.9961 5.9567 3.4404 21 6 7.6779 6.7413 4.9514 22 7 6.4276 6.8156 5.3291 23 14 9.0406 7.2334 6.1305 24 1 10.3572 7.0585 5.4661 25 1 8.8677 8.6557 6.5209 26 1 8.9803 6.3767 7.3419 27 6 7.1158 5.4035 1.5614 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 0.5489 2.1252 1.3970 34 1 2.0698 1.5876 2.1492 35 1 1.9981 3.1544 1.3072 36 1 3.9190 1.1167 1.8410 37 1 3.5731 3.4501 -0.9121 38 1 3.8645 3.3463 0.8407 39 1 6.0301 2.0737 -0.2777 40 1 4.3059 6.2534 -0.0951 41 1 4.0867 7.7876 1.8154 42 1 5.7999 7.8231 3.5754 43 1 6.2081 7.1265 6.2213 44 1 7.9611 4.7353 1.4872 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619485873.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:21 Heat of formation + Delta-G solvation = -133.059292 kcal Electronic energy + Delta-G solvation = -26177.907386 eV Core-core repulsion = 22413.913977 eV Total energy + Delta-G solvation = -3763.993409 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.08048 -37.66064 -36.65433 -35.30296 -35.03979 -34.22392 -33.86701 -30.33205 -30.10086 -29.80938 -27.57698 -25.52567 -25.23273 -22.15300 -21.87888 -21.00146 -20.18166 -19.01036 -17.96142 -17.27072 -16.84406 -16.11885 -15.86861 -15.66126 -15.19958 -14.83224 -14.77526 -14.46017 -14.24152 -13.75080 -13.48572 -13.35970 -13.11113 -12.60615 -12.57109 -12.28956 -11.93912 -11.91993 -11.68364 -11.63130 -11.60493 -11.52779 -11.40784 -11.39351 -11.21035 -11.00351 -10.91970 -10.84814 -10.64125 -10.61521 -9.91241 -9.80508 -9.68121 -9.37902 -9.13566 -8.06523 -7.73184 -6.95657 -4.55805 1.03464 2.17395 2.60184 2.99019 3.02530 3.05931 3.54518 3.81335 4.22297 4.28003 4.41486 4.48056 4.62648 4.69901 4.96272 5.01175 5.09184 5.26168 5.29987 5.35598 5.38223 5.48720 5.53452 5.74271 5.80722 5.85329 5.86526 5.89015 6.00337 6.08015 6.15265 6.19172 6.24062 6.63612 6.73759 6.82881 7.00886 7.18374 7.25848 7.36335 7.55726 7.70063 7.79091 7.91968 8.38306 8.64532 8.69523 9.99728 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013070 B = 0.003553 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.849203 B = 7878.534292 C = 8872.405225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.113 4.113 3 C -0.124 4.124 4 H 0.082 0.918 5 C -0.161 4.161 6 C 0.106 3.894 7 H 0.105 0.895 8 O -0.556 6.556 9 C 0.086 3.914 10 N -1.116 6.116 11 S 2.689 3.311 12 O -0.973 6.973 13 O -0.977 6.977 14 C -0.631 4.631 15 C -0.151 4.151 16 C -0.120 4.120 17 C -0.119 4.119 18 C 0.091 3.909 19 C -0.459 4.459 20 H 0.083 0.917 21 C 0.075 3.925 22 N -0.794 5.794 23 Si 0.911 3.089 24 H -0.258 1.258 25 H -0.271 1.271 26 H -0.273 1.273 27 C -0.122 4.122 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.377 0.623 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.417 0.583 40 H 0.105 0.895 41 H 0.097 0.903 42 H 0.125 0.875 43 H 0.283 0.717 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.959 -9.124 -4.675 14.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.151 4.151 3 C -0.143 4.143 4 H 0.100 0.900 5 C -0.219 4.219 6 C 0.046 3.954 7 H 0.123 0.877 8 O -0.363 6.363 9 C -0.041 4.041 10 N -0.875 5.875 11 S 2.785 3.215 12 O -0.963 6.963 13 O -0.967 6.967 14 C -0.723 4.723 15 C -0.173 4.173 16 C -0.140 4.140 17 C -0.139 4.139 18 C 0.088 3.912 19 C -0.488 4.488 20 H 0.101 0.899 21 C -0.143 4.143 22 N -0.419 5.419 23 Si 0.735 3.265 24 H -0.182 1.182 25 H -0.196 1.196 26 H -0.198 1.198 27 C -0.144 4.144 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.225 0.775 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.252 0.748 40 H 0.123 0.877 41 H 0.116 0.884 42 H 0.142 0.858 43 H 0.094 0.906 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -9.563 -9.135 -5.790 14.437 hybrid contribution 0.199 0.591 1.890 1.990 sum -9.364 -8.544 -3.900 13.262 Atomic orbital electron populations 1.21842 0.96048 1.01420 1.01874 1.21465 0.95422 0.95650 1.02554 1.21841 0.95494 0.97359 0.99645 0.89966 1.22006 1.02111 1.01004 0.96730 1.22156 0.91393 0.90922 0.90962 0.87717 1.86551 1.76263 1.56473 1.16997 1.22038 0.80659 0.98797 1.02651 1.55455 1.16193 1.26846 1.88997 1.01630 0.72540 0.72753 0.74555 1.93539 1.31980 1.83971 1.86825 1.93506 1.72188 1.77476 1.53546 1.29745 1.05473 1.17628 1.19481 1.20068 0.97462 1.00424 0.99301 1.20804 0.98836 0.99240 0.95106 1.21633 0.95293 0.98871 0.98114 1.17693 0.92656 0.89432 0.91443 1.19663 0.97758 1.37679 0.93730 0.89856 1.25935 0.96431 0.92707 0.99210 1.69780 1.18934 1.33377 1.19797 0.86209 0.81773 0.79003 0.79534 1.18192 1.19594 1.19844 1.20789 0.97615 1.00324 0.95646 0.92868 0.92970 0.92474 0.92093 0.91320 0.91904 0.92314 0.91649 0.77473 0.89682 0.90744 0.74843 0.87686 0.88438 0.85767 0.90640 0.87040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.67 37.16 0.36 -0.75 16 2 C -0.11 -0.91 5.19 -26.73 -0.14 -1.05 16 3 C -0.12 -1.06 2.28 -90.62 -0.21 -1.26 16 4 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 5 C -0.16 -1.37 8.29 37.16 0.31 -1.06 16 6 C 0.11 1.08 2.86 -26.74 -0.08 1.00 16 7 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 8 O -0.56 -6.08 12.52 -35.23 -0.44 -6.52 16 9 C 0.09 1.06 5.35 -4.04 -0.02 1.03 16 10 N -1.12 -16.13 5.96 -10.61 -0.06 -16.19 16 11 S 2.69 50.13 5.74 -107.50 -0.62 49.51 16 12 O -0.97 -20.60 17.27 -57.17 -0.99 -21.59 16 13 O -0.98 -19.65 16.73 -57.17 -0.96 -20.61 16 14 C -0.63 -13.57 5.94 -39.66 -0.24 -13.80 16 15 C -0.15 -3.20 9.53 -39.29 -0.37 -3.57 16 16 C -0.12 -2.64 10.02 -39.66 -0.40 -3.04 16 17 C -0.12 -2.92 8.70 -38.87 -0.34 -3.26 16 18 C 0.09 2.33 5.58 -106.83 -0.60 1.73 16 19 C -0.46 -11.68 9.05 -37.74 -0.34 -12.02 16 20 H 0.08 2.06 7.91 -52.49 -0.42 1.64 16 21 C 0.08 1.79 5.14 -17.34 -0.09 1.70 16 22 N -0.79 -19.25 10.95 55.55 0.61 -18.64 16 23 Si 0.91 17.88 29.60 -169.99 -5.03 12.85 16 24 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 25 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 26 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 27 C -0.12 -2.91 9.26 -38.87 -0.36 -3.27 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.40 6.57 -51.92 -0.34 0.06 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.59 7.84 -51.93 -0.41 0.19 16 33 H 0.06 0.49 6.56 -51.93 -0.34 0.15 16 34 H 0.06 0.47 6.78 -51.93 -0.35 0.12 16 35 H 0.06 0.61 6.55 -51.93 -0.34 0.27 16 36 H 0.38 3.47 7.33 45.56 0.33 3.80 16 37 H 0.08 1.02 7.75 -51.93 -0.40 0.62 16 38 H 0.07 0.93 6.71 -51.93 -0.35 0.58 16 39 H 0.42 5.45 8.51 -34.47 -0.29 5.16 16 40 H 0.11 1.99 7.59 -52.49 -0.40 1.59 16 41 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 42 H 0.12 3.10 6.16 -52.49 -0.32 2.77 16 43 H 0.28 6.20 8.30 -40.82 -0.34 5.86 16 44 H 0.11 2.57 7.60 -52.48 -0.40 2.17 16 LS Contribution 367.86 15.07 5.54 5.54 Total: -1.00 -30.28 367.86 -10.15 -40.43 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -5.70 Total: 12.84 kcal Atomic # 6 Polarization: -35.12 SS G_CDS: -2.51 Total: -37.62 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 0.55 Total: -34.83 kcal Atomic # 8 Polarization: -46.33 SS G_CDS: -2.38 Total: -48.72 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.85 kcal Atomic # 16 Polarization: 50.13 SS G_CDS: -0.62 Total: 49.51 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.28 -10.15 -40.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619485873.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.628 kcal (2) G-P(sol) polarization free energy of solvation -30.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds