Wall clock time and date at job start Tue Mar 31 2020 15:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.47016 * 2 1 4 4 H 1.08997 * 109.46728 * 305.00414 * 3 2 1 5 5 C 1.52997 * 109.46861 * 64.99913 * 3 2 1 6 6 C 1.52989 * 109.47328 * 185.00262 * 3 2 1 7 7 H 1.09005 * 109.47318 * 59.99663 * 6 3 2 8 8 O 1.42909 * 109.47198 * 299.99928 * 6 3 2 9 9 C 1.52999 * 109.47171 * 180.02562 * 6 3 2 10 10 N 1.46503 * 109.47152 * 184.99896 * 9 6 3 11 11 S 1.65602 * 120.00281 * 165.00008 * 10 9 6 12 12 O 1.42099 * 106.40358 * 178.54096 * 11 10 9 13 13 O 1.42108 * 106.39666 * 311.46200 * 11 10 9 14 14 C 1.76195 * 107.21730 * 64.99794 * 11 10 9 15 15 C 1.38654 * 119.87810 * 269.72885 * 14 11 10 16 16 C 1.38616 * 120.50570 * 179.71970 * 15 14 11 17 17 C 1.37643 * 120.24434 * 0.55807 * 16 15 14 18 18 C 1.40698 * 119.74251 * 359.72227 * 17 16 15 19 19 C 1.41395 * 120.24570 * 180.02562 * 18 17 16 20 20 H 1.07999 * 120.00343 * 204.36295 * 19 18 17 21 21 C 1.39950 * 119.99692 * 24.36347 * 19 18 17 22 22 N 1.30821 * 120.00325 * 17.87237 * 21 19 18 23 23 Si 1.86801 * 120.00069 * 197.87427 * 21 19 18 24 24 H 1.48506 * 109.46929 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47338 * 119.99488 * 23 21 19 26 26 H 1.48496 * 109.47239 * 240.00246 * 23 21 19 27 27 C 1.37597 * 119.87752 * 90.00230 * 14 11 10 28 28 H 1.08993 * 109.47428 * 60.00101 * 1 2 3 29 29 H 1.09003 * 109.46541 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.46870 * 299.99707 * 1 2 3 31 31 H 1.08997 * 109.47497 * 240.00413 * 2 1 3 32 32 H 1.09003 * 109.47542 * 119.99853 * 2 1 3 33 33 H 1.08998 * 109.47894 * 300.00283 * 5 3 2 34 34 H 1.08997 * 109.47564 * 60.00643 * 5 3 2 35 35 H 1.09001 * 109.46989 * 180.02562 * 5 3 2 36 36 H 0.96697 * 113.99799 * 300.00029 * 8 6 3 37 37 H 1.08996 * 109.47479 * 304.99681 * 9 6 3 38 38 H 1.08997 * 109.47333 * 65.00083 * 9 6 3 39 39 H 0.97001 * 119.99950 * 345.00247 * 10 9 6 40 40 H 1.07999 * 119.74985 * 0.02562 * 15 14 11 41 41 H 1.07998 * 119.88406 * 180.25594 * 16 15 14 42 42 H 1.07999 * 120.12903 * 179.70481 * 17 16 15 43 43 H 0.96997 * 120.00608 * 180.02562 * 22 21 19 44 44 H 1.08006 * 120.12493 * 359.97438 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 3.5647 1.4445 -0.1258 7 1 3.8531 0.9571 -1.0572 8 8 4.1346 0.7378 0.9779 9 6 4.0747 2.8870 -0.1251 10 7 5.5199 2.8941 -0.3650 11 16 6.2826 4.3027 -0.7853 12 8 7.6629 3.9894 -0.9116 13 8 5.5163 4.8757 -1.8360 14 6 6.1448 5.3998 0.5865 15 6 5.0613 6.2602 0.6767 16 6 4.9369 7.1246 1.7531 17 6 5.8962 7.1455 2.7400 18 6 7.0030 6.2810 2.6559 19 6 7.9945 6.2932 3.6639 20 1 8.9961 5.9567 3.4404 21 6 7.6779 6.7413 4.9514 22 7 6.4276 6.8156 5.3291 23 14 9.0406 7.2334 6.1305 24 1 10.3572 7.0585 5.4661 25 1 8.8677 8.6557 6.5209 26 1 8.9803 6.3767 7.3419 27 6 7.1158 5.4035 1.5614 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 0.5489 2.1252 1.3970 34 1 2.0698 1.5876 2.1492 35 1 1.9981 3.1544 1.3072 36 1 3.9190 1.1167 1.8410 37 1 3.5731 3.4501 -0.9121 38 1 3.8645 3.3463 0.8407 39 1 6.0301 2.0737 -0.2777 40 1 4.3059 6.2534 -0.0951 41 1 4.0867 7.7876 1.8154 42 1 5.7999 7.8231 3.5754 43 1 6.2081 7.1265 6.2213 44 1 7.9611 4.7353 1.4872 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619485873.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:20 Heat of formation + Delta-G solvation = -154.389684 kcal Electronic energy + Delta-G solvation = -26178.832341 eV Core-core repulsion = 22413.913977 eV Total energy + Delta-G solvation = -3764.918364 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.90202 -39.44305 -38.25815 -36.91518 -35.90104 -35.66943 -35.21675 -31.91364 -31.58444 -31.06482 -28.41834 -27.35046 -26.02796 -23.67520 -22.97191 -22.73487 -21.00699 -20.44669 -19.59213 -18.54956 -17.99658 -17.72872 -16.99508 -16.87723 -16.67237 -16.47770 -15.93008 -15.49258 -15.25731 -15.14128 -15.03736 -14.46286 -14.30707 -14.02838 -13.69483 -13.46015 -13.31714 -13.17216 -13.09665 -13.08503 -13.03918 -12.82957 -12.79599 -12.61291 -12.52347 -12.35882 -12.21194 -11.95989 -11.55528 -11.49247 -11.37594 -11.32076 -11.14864 -10.77358 -10.38921 -9.84860 -9.56154 -8.73973 -6.45314 -0.48686 0.40425 0.83984 1.37370 1.44065 1.51889 2.13072 2.17508 2.55041 2.78589 3.39838 3.50563 3.52525 3.74052 3.87550 4.00888 4.15969 4.30663 4.34214 4.44415 4.50310 4.57781 4.63437 4.72754 4.79836 4.84779 4.90491 4.94618 5.06276 5.08850 5.13211 5.20284 5.21051 5.23880 5.28293 5.40862 5.55554 5.56663 5.58282 5.88743 5.94044 6.09090 6.11822 6.52633 6.78659 6.79387 6.84612 8.23919 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013070 B = 0.003553 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.849203 B = 7878.534292 C = 8872.405225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.118 4.118 4 H 0.090 0.910 5 C -0.163 4.163 6 C 0.112 3.888 7 H 0.111 0.889 8 O -0.567 6.567 9 C 0.076 3.924 10 N -1.102 6.102 11 S 2.720 3.280 12 O -0.999 6.999 13 O -0.986 6.986 14 C -0.637 4.637 15 C -0.147 4.147 16 C -0.121 4.121 17 C -0.141 4.141 18 C 0.063 3.937 19 C -0.498 4.498 20 H 0.076 0.924 21 C 0.040 3.960 22 N -0.819 5.819 23 Si 0.981 3.019 24 H -0.262 1.262 25 H -0.262 1.262 26 H -0.263 1.263 27 C -0.145 4.145 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.383 0.617 37 H 0.093 0.907 38 H 0.073 0.927 39 H 0.426 0.574 40 H 0.133 0.867 41 H 0.128 0.872 42 H 0.113 0.887 43 H 0.292 0.708 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.235 -9.620 -5.001 15.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.137 4.137 4 H 0.109 0.891 5 C -0.220 4.220 6 C 0.052 3.948 7 H 0.129 0.871 8 O -0.375 6.375 9 C -0.050 4.050 10 N -0.864 5.864 11 S 2.812 3.188 12 O -0.989 6.989 13 O -0.975 6.975 14 C -0.726 4.726 15 C -0.168 4.168 16 C -0.140 4.140 17 C -0.160 4.160 18 C 0.060 3.940 19 C -0.527 4.527 20 H 0.094 0.906 21 C -0.176 4.176 22 N -0.444 5.444 23 Si 0.802 3.198 24 H -0.186 1.186 25 H -0.187 1.187 26 H -0.188 1.188 27 C -0.166 4.166 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.233 0.767 37 H 0.112 0.888 38 H 0.091 0.909 39 H 0.262 0.738 40 H 0.151 0.849 41 H 0.146 0.854 42 H 0.131 0.869 43 H 0.103 0.897 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -10.851 -9.614 -6.098 15.728 hybrid contribution 0.477 0.676 1.897 2.069 sum -10.374 -8.938 -4.201 14.324 Atomic orbital electron populations 1.21830 0.95279 1.01825 1.02109 1.21433 0.96053 0.95100 1.02254 1.21800 0.94117 0.97855 0.99956 0.89123 1.22022 1.02682 1.00447 0.96850 1.22165 0.92373 0.89264 0.91029 0.87117 1.86537 1.76592 1.56744 1.17596 1.22337 0.79044 1.00731 1.02910 1.55119 1.17240 1.25482 1.88587 1.00756 0.71810 0.72782 0.73426 1.93499 1.34105 1.84367 1.86929 1.93491 1.72292 1.78327 1.53434 1.30221 1.04609 1.18185 1.19583 1.20464 0.97625 0.99257 0.99420 1.21144 0.98965 0.99484 0.94416 1.21640 0.96194 0.99295 0.98903 1.18033 0.93422 0.90272 0.92307 1.19866 0.97710 1.40038 0.95104 0.90608 1.26693 0.98745 0.91997 1.00185 1.69800 1.20437 1.33463 1.20712 0.85170 0.78393 0.78982 0.77301 1.18566 1.18657 1.18793 1.20836 0.98551 1.00751 0.96496 0.92468 0.92543 0.92387 0.92013 0.92027 0.91090 0.92161 0.92510 0.76744 0.88836 0.90882 0.73757 0.84885 0.85443 0.86902 0.89715 0.87521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.67 71.98 0.70 -1.19 16 2 C -0.11 -1.57 5.19 30.60 0.16 -1.41 16 3 C -0.12 -1.75 2.28 -10.80 -0.02 -1.78 16 4 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 5 C -0.16 -2.48 8.29 71.98 0.60 -1.88 16 6 C 0.11 2.05 2.86 30.59 0.09 2.14 16 7 H 0.11 1.92 8.14 -2.38 -0.02 1.90 16 8 O -0.57 -11.53 12.52 -148.98 -1.87 -13.39 16 9 C 0.08 1.73 5.35 86.38 0.46 2.19 16 10 N -1.10 -30.20 5.96 -187.49 -1.12 -31.31 16 11 S 2.72 98.47 5.74 -56.49 -0.32 98.15 16 12 O -1.00 -41.98 17.27 -128.00 -2.21 -44.19 16 13 O -0.99 -37.68 16.73 -128.00 -2.14 -39.83 16 14 C -0.64 -27.14 5.94 22.22 0.13 -27.01 16 15 C -0.15 -6.00 9.53 22.46 0.21 -5.79 16 16 C -0.12 -5.20 10.02 22.22 0.22 -4.98 16 17 C -0.14 -7.00 8.70 22.73 0.20 -6.80 16 18 C 0.06 3.31 5.58 -21.29 -0.12 3.20 16 19 C -0.50 -26.30 9.05 23.46 0.21 -26.08 16 20 H 0.08 3.94 7.91 -2.91 -0.02 3.91 16 21 C 0.04 1.92 5.14 85.26 0.44 2.36 16 22 N -0.82 -40.28 10.95 21.83 0.24 -40.04 16 23 Si 0.98 36.93 29.60 68.60 2.03 38.96 16 24 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 25 H -0.26 -9.42 7.11 99.48 0.71 -8.72 16 26 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 27 C -0.15 -7.10 9.26 22.73 0.21 -6.89 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.70 6.57 -2.38 -0.02 0.68 16 31 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.06 0.97 7.84 -2.39 -0.02 0.95 16 33 H 0.07 0.96 6.56 -2.39 -0.02 0.95 16 34 H 0.06 0.89 6.78 -2.39 -0.02 0.87 16 35 H 0.06 0.96 6.55 -2.39 -0.02 0.95 16 36 H 0.38 6.59 7.33 -74.06 -0.54 6.05 16 37 H 0.09 2.01 7.75 -2.39 -0.02 1.99 16 38 H 0.07 1.71 6.71 -2.39 -0.02 1.70 16 39 H 0.43 10.51 8.51 -96.74 -0.82 9.69 16 40 H 0.13 4.65 7.59 -2.91 -0.02 4.63 16 41 H 0.13 4.60 8.06 -2.91 -0.02 4.58 16 42 H 0.11 5.78 6.16 -2.91 -0.02 5.76 16 43 H 0.29 12.84 8.30 -92.71 -0.77 12.07 16 44 H 0.11 5.15 7.60 -2.91 -0.02 5.12 16 Total: -1.00 -64.84 367.86 -2.24 -67.08 By element: Atomic # 1 Polarization: 38.84 SS G_CDS: -0.34 Total: 38.50 kcal Atomic # 6 Polarization: -77.41 SS G_CDS: 3.49 Total: -73.93 kcal Atomic # 7 Polarization: -70.47 SS G_CDS: -0.88 Total: -71.35 kcal Atomic # 8 Polarization: -91.19 SS G_CDS: -6.22 Total: -97.41 kcal Atomic # 14 Polarization: 36.93 SS G_CDS: 2.03 Total: 38.96 kcal Atomic # 16 Polarization: 98.47 SS G_CDS: -0.32 Total: 98.15 kcal Total: -64.84 -2.24 -67.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619485873.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.310 kcal (2) G-P(sol) polarization free energy of solvation -64.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds