Wall clock time and date at job start Tue Mar 31 2020 15:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46998 * 2 1 4 4 H 1.08998 * 109.47292 * 305.00185 * 3 2 1 5 5 C 1.53002 * 109.46837 * 64.99917 * 3 2 1 6 6 C 1.53001 * 109.47278 * 184.99428 * 3 2 1 7 7 H 1.09000 * 109.47149 * 300.00888 * 6 3 2 8 8 O 1.42908 * 109.46303 * 60.00262 * 6 3 2 9 9 C 1.52997 * 109.47278 * 179.97438 * 6 3 2 10 10 N 1.46497 * 109.47222 * 180.02562 * 9 6 3 11 11 S 1.65601 * 120.00387 * 165.00161 * 10 9 6 12 12 O 1.42093 * 106.40201 * 178.54016 * 11 10 9 13 13 O 1.42103 * 106.39855 * 311.45967 * 11 10 9 14 14 C 1.76196 * 107.21543 * 64.99702 * 11 10 9 15 15 C 1.38656 * 119.87975 * 269.72821 * 14 11 10 16 16 C 1.38608 * 120.50369 * 179.72357 * 15 14 11 17 17 C 1.37641 * 120.24704 * 0.55135 * 16 15 14 18 18 C 1.40688 * 119.74492 * 359.72949 * 17 16 15 19 19 C 1.41399 * 120.24501 * 180.02562 * 18 17 16 20 20 H 1.08000 * 119.99947 * 204.37183 * 19 18 17 21 21 C 1.39941 * 120.00279 * 24.36525 * 19 18 17 22 22 N 1.30829 * 119.99434 * 17.88198 * 21 19 18 23 23 Si 1.86794 * 120.00351 * 197.88421 * 21 19 18 24 24 H 1.48500 * 109.47189 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47429 * 120.00074 * 23 21 19 26 26 H 1.48507 * 109.47050 * 239.99867 * 23 21 19 27 27 C 1.37597 * 119.87625 * 90.00310 * 14 11 10 28 28 H 1.09005 * 109.46966 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47200 * 299.99734 * 1 2 3 30 30 H 1.08996 * 109.47101 * 60.00206 * 1 2 3 31 31 H 1.09002 * 109.47326 * 240.00107 * 2 1 3 32 32 H 1.08998 * 109.46673 * 120.00091 * 2 1 3 33 33 H 1.09004 * 109.47043 * 179.97438 * 5 3 2 34 34 H 1.08999 * 109.47626 * 299.99569 * 5 3 2 35 35 H 1.09007 * 109.47547 * 60.00118 * 5 3 2 36 36 H 0.96698 * 114.00196 * 60.00116 * 8 6 3 37 37 H 1.08998 * 109.47292 * 300.00757 * 9 6 3 38 38 H 1.09000 * 109.47215 * 60.00246 * 9 6 3 39 39 H 0.97000 * 119.99579 * 345.00125 * 10 9 6 40 40 H 1.08004 * 119.74634 * 0.02562 * 15 14 11 41 41 H 1.08004 * 119.88044 * 180.25488 * 16 15 14 42 42 H 1.08003 * 120.12382 * 179.74875 * 17 16 15 43 43 H 0.97005 * 119.99772 * 180.02562 * 22 21 19 44 44 H 1.08006 * 120.12586 * 359.97438 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1265 1.3074 6 6 3.5648 1.4444 -0.1256 7 1 3.9994 0.9053 0.7162 8 8 3.9428 0.8055 -1.3467 9 6 4.0747 2.8869 -0.1262 10 7 5.5347 2.8887 -0.2471 11 16 6.3309 4.2851 -0.6453 12 8 7.7165 3.9699 -0.6487 13 8 5.6540 4.8256 -1.7718 14 6 6.0825 5.4224 0.6773 15 6 4.9962 6.2837 0.6528 16 6 4.7852 7.1796 1.6892 17 6 5.6605 7.2311 2.7502 18 6 6.7694 6.3659 2.7829 19 6 7.6750 6.4094 3.8680 20 1 8.6912 6.0678 3.7373 21 6 7.2545 6.8951 5.1112 22 7 5.9775 6.9788 5.3829 23 14 8.5166 7.4241 6.3827 24 1 9.8829 7.2315 5.8339 25 1 8.3136 8.8571 6.7153 26 1 8.3564 6.6037 7.6102 27 6 6.9704 5.4564 1.7279 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.9989 3.1540 1.3076 34 1 0.5489 2.1252 1.3970 35 1 2.0698 1.5874 2.1493 36 1 3.5907 1.2326 -2.1395 37 1 3.6401 3.4255 -0.9682 38 1 3.7863 3.3746 0.8049 39 1 6.0350 2.0719 -0.0938 40 1 4.3066 6.2529 -0.1778 41 1 3.9335 7.8432 1.6618 42 1 5.4964 7.9328 3.5547 43 1 5.6860 7.3158 6.2445 44 1 7.8182 4.7873 1.7431 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619485875.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:28 Heat of formation + Delta-G solvation = -133.491079 kcal Electronic energy + Delta-G solvation = -26102.874158 eV Core-core repulsion = 22338.862025 eV Total energy + Delta-G solvation = -3764.012133 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -38.94515 -37.66216 -36.64798 -35.30195 -35.19529 -34.30500 -33.86686 -30.52609 -30.10195 -29.80939 -27.14054 -25.52116 -25.13899 -22.17640 -21.88176 -21.00177 -20.55214 -19.02115 -17.96267 -17.26997 -16.80809 -16.11102 -15.86650 -15.36519 -15.21519 -14.95477 -14.73757 -14.39178 -14.18769 -13.75232 -13.49087 -13.36299 -13.24040 -12.62362 -12.59336 -12.22665 -11.92135 -11.90826 -11.73935 -11.61984 -11.57752 -11.53726 -11.40755 -11.39433 -11.28843 -11.00426 -10.92017 -10.81507 -10.61700 -10.60520 -9.97258 -9.79750 -9.66661 -9.37998 -9.10508 -8.06619 -7.73282 -6.95744 -4.55988 1.03478 2.17305 2.60056 2.98812 3.02391 3.05758 3.55239 3.81161 4.22282 4.23824 4.40182 4.44015 4.64637 4.74895 4.97622 5.00373 5.11317 5.28236 5.30737 5.37513 5.38713 5.49409 5.55652 5.77394 5.79110 5.84756 5.88593 5.96520 5.99699 6.06932 6.14981 6.18990 6.27317 6.63277 6.73697 6.82686 7.00764 7.18122 7.24452 7.36089 7.52546 7.69996 7.78922 7.91853 8.38157 8.64424 8.69376 9.99664 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013272 B = 0.003497 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.248709 B = 8005.328827 C = 9093.786389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C -0.122 4.122 4 H 0.076 0.924 5 C -0.156 4.156 6 C 0.106 3.894 7 H 0.106 0.894 8 O -0.556 6.556 9 C 0.085 3.915 10 N -1.115 6.115 11 S 2.691 3.309 12 O -0.973 6.973 13 O -0.977 6.977 14 C -0.632 4.632 15 C -0.151 4.151 16 C -0.120 4.120 17 C -0.119 4.119 18 C 0.091 3.909 19 C -0.459 4.459 20 H 0.083 0.917 21 C 0.075 3.925 22 N -0.794 5.794 23 Si 0.911 3.089 24 H -0.258 1.258 25 H -0.271 1.271 26 H -0.273 1.273 27 C -0.123 4.123 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.375 0.625 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.416 0.584 40 H 0.105 0.895 41 H 0.098 0.902 42 H 0.125 0.875 43 H 0.283 0.717 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.523 -9.267 -5.561 14.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C -0.141 4.141 4 H 0.094 0.906 5 C -0.214 4.214 6 C 0.045 3.955 7 H 0.124 0.876 8 O -0.361 6.361 9 C -0.042 4.042 10 N -0.873 5.873 11 S 2.787 3.213 12 O -0.963 6.963 13 O -0.967 6.967 14 C -0.724 4.724 15 C -0.172 4.172 16 C -0.140 4.140 17 C -0.139 4.139 18 C 0.088 3.912 19 C -0.489 4.489 20 H 0.101 0.899 21 C -0.143 4.143 22 N -0.419 5.419 23 Si 0.735 3.265 24 H -0.182 1.182 25 H -0.196 1.196 26 H -0.199 1.199 27 C -0.144 4.144 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.222 0.778 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.250 0.750 40 H 0.123 0.877 41 H 0.116 0.884 42 H 0.142 0.858 43 H 0.094 0.906 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -9.000 -9.325 -5.784 14.191 hybrid contribution 0.015 0.653 1.224 1.387 sum -8.985 -8.672 -4.560 13.294 Atomic orbital electron populations 1.21831 0.96023 1.01414 1.01868 1.21489 0.95514 0.95693 1.02595 1.21854 0.95303 0.97334 0.99652 0.90584 1.21963 1.01772 1.01136 0.96487 1.22190 0.93286 0.91885 0.88111 0.87646 1.86569 1.77140 1.56778 1.15621 1.22046 0.80226 0.98718 1.03181 1.55408 1.14873 1.27394 1.89630 1.01589 0.72531 0.72760 0.74451 1.93536 1.31243 1.83965 1.87580 1.93500 1.75695 1.78604 1.48941 1.29763 1.06658 1.17904 1.18081 1.20067 0.97652 1.00142 0.99353 1.20804 0.99123 0.99044 0.95005 1.21634 0.96005 0.98961 0.97293 1.17693 0.92399 0.89437 0.91699 1.19662 0.98500 1.36917 0.93776 0.89856 1.25937 0.95903 0.92865 0.99602 1.69790 1.15748 1.33102 1.23244 0.86206 0.81622 0.79046 0.79623 1.18193 1.19587 1.19850 1.20789 0.98538 1.00170 0.94943 0.92971 0.92489 0.92872 0.91242 0.92012 0.91622 0.92080 0.92219 0.77772 0.90272 0.90117 0.74996 0.87687 0.88422 0.85755 0.90639 0.87040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.67 37.16 0.36 -0.76 16 2 C -0.12 -0.94 5.33 -26.73 -0.14 -1.08 16 3 C -0.12 -1.05 2.16 -90.62 -0.20 -1.24 16 4 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 5 C -0.16 -1.41 8.60 37.16 0.32 -1.09 16 6 C 0.11 1.07 2.64 -26.73 -0.07 1.00 16 7 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 8 O -0.56 -5.75 12.44 -35.23 -0.44 -6.19 16 9 C 0.09 1.05 5.53 -4.05 -0.02 1.03 16 10 N -1.11 -16.05 5.86 -10.62 -0.06 -16.11 16 11 S 2.69 50.09 5.74 -107.50 -0.62 49.48 16 12 O -0.97 -20.62 17.27 -57.17 -0.99 -21.61 16 13 O -0.98 -19.58 16.73 -57.17 -0.96 -20.54 16 14 C -0.63 -13.60 5.94 -39.66 -0.24 -13.83 16 15 C -0.15 -3.19 9.53 -39.29 -0.37 -3.57 16 16 C -0.12 -2.64 10.02 -39.66 -0.40 -3.04 16 17 C -0.12 -2.92 8.70 -38.88 -0.34 -3.26 16 18 C 0.09 2.33 5.58 -106.83 -0.60 1.74 16 19 C -0.46 -11.69 9.05 -37.74 -0.34 -12.03 16 20 H 0.08 2.06 7.91 -52.49 -0.42 1.64 16 21 C 0.07 1.79 5.14 -17.34 -0.09 1.70 16 22 N -0.79 -19.30 10.95 55.55 0.61 -18.69 16 23 Si 0.91 17.89 29.59 -169.99 -5.03 12.86 16 24 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 25 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 26 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 27 C -0.12 -2.93 9.26 -38.87 -0.36 -3.29 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.41 6.56 -51.93 -0.34 0.07 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.59 7.54 -51.93 -0.39 0.20 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.65 6.43 -51.93 -0.33 0.31 16 34 H 0.06 0.50 6.57 -51.93 -0.34 0.16 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.37 2.88 9.04 45.56 0.41 3.30 16 37 H 0.08 0.94 7.75 -51.93 -0.40 0.54 16 38 H 0.08 1.02 6.43 -51.93 -0.33 0.69 16 39 H 0.42 5.37 8.65 -34.47 -0.30 5.07 16 40 H 0.11 1.99 7.59 -52.48 -0.40 1.59 16 41 H 0.10 1.86 8.06 -52.48 -0.42 1.44 16 42 H 0.12 3.10 6.15 -52.48 -0.32 2.78 16 43 H 0.28 6.21 8.30 -40.82 -0.34 5.87 16 44 H 0.11 2.56 7.60 -52.48 -0.40 2.17 16 LS Contribution 370.48 15.07 5.58 5.58 Total: -1.00 -30.53 370.48 -10.04 -40.57 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -5.66 Total: 12.38 kcal Atomic # 6 Polarization: -35.25 SS G_CDS: -2.48 Total: -37.73 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: 0.55 Total: -34.80 kcal Atomic # 8 Polarization: -45.95 SS G_CDS: -2.38 Total: -48.34 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.03 Total: 12.86 kcal Atomic # 16 Polarization: 50.09 SS G_CDS: -0.62 Total: 49.48 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.53 -10.04 -40.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619485875.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.919 kcal (2) G-P(sol) polarization free energy of solvation -30.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds