Wall clock time and date at job start Tue Mar 31 2020 15:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46998 * 2 1 4 4 H 1.08998 * 109.47292 * 305.00185 * 3 2 1 5 5 C 1.53002 * 109.46837 * 64.99917 * 3 2 1 6 6 C 1.53001 * 109.47278 * 184.99428 * 3 2 1 7 7 H 1.09000 * 109.47149 * 300.00888 * 6 3 2 8 8 O 1.42908 * 109.46303 * 60.00262 * 6 3 2 9 9 C 1.52997 * 109.47278 * 179.97438 * 6 3 2 10 10 N 1.46497 * 109.47222 * 180.02562 * 9 6 3 11 11 S 1.65601 * 120.00387 * 165.00161 * 10 9 6 12 12 O 1.42093 * 106.40201 * 178.54016 * 11 10 9 13 13 O 1.42103 * 106.39855 * 311.45967 * 11 10 9 14 14 C 1.76196 * 107.21543 * 64.99702 * 11 10 9 15 15 C 1.38656 * 119.87975 * 269.72821 * 14 11 10 16 16 C 1.38608 * 120.50369 * 179.72357 * 15 14 11 17 17 C 1.37641 * 120.24704 * 0.55135 * 16 15 14 18 18 C 1.40688 * 119.74492 * 359.72949 * 17 16 15 19 19 C 1.41399 * 120.24501 * 180.02562 * 18 17 16 20 20 H 1.08000 * 119.99947 * 204.37183 * 19 18 17 21 21 C 1.39941 * 120.00279 * 24.36525 * 19 18 17 22 22 N 1.30829 * 119.99434 * 17.88198 * 21 19 18 23 23 Si 1.86794 * 120.00351 * 197.88421 * 21 19 18 24 24 H 1.48500 * 109.47189 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47429 * 120.00074 * 23 21 19 26 26 H 1.48507 * 109.47050 * 239.99867 * 23 21 19 27 27 C 1.37597 * 119.87625 * 90.00310 * 14 11 10 28 28 H 1.09005 * 109.46966 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47200 * 299.99734 * 1 2 3 30 30 H 1.08996 * 109.47101 * 60.00206 * 1 2 3 31 31 H 1.09002 * 109.47326 * 240.00107 * 2 1 3 32 32 H 1.08998 * 109.46673 * 120.00091 * 2 1 3 33 33 H 1.09004 * 109.47043 * 179.97438 * 5 3 2 34 34 H 1.08999 * 109.47626 * 299.99569 * 5 3 2 35 35 H 1.09007 * 109.47547 * 60.00118 * 5 3 2 36 36 H 0.96698 * 114.00196 * 60.00116 * 8 6 3 37 37 H 1.08998 * 109.47292 * 300.00757 * 9 6 3 38 38 H 1.09000 * 109.47215 * 60.00246 * 9 6 3 39 39 H 0.97000 * 119.99579 * 345.00125 * 10 9 6 40 40 H 1.08004 * 119.74634 * 0.02562 * 15 14 11 41 41 H 1.08004 * 119.88044 * 180.25488 * 16 15 14 42 42 H 1.08003 * 120.12382 * 179.74875 * 17 16 15 43 43 H 0.97005 * 119.99772 * 180.02562 * 22 21 19 44 44 H 1.08006 * 120.12586 * 359.97438 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1265 1.3074 6 6 3.5648 1.4444 -0.1256 7 1 3.9994 0.9053 0.7162 8 8 3.9428 0.8055 -1.3467 9 6 4.0747 2.8869 -0.1262 10 7 5.5347 2.8887 -0.2471 11 16 6.3309 4.2851 -0.6453 12 8 7.7165 3.9699 -0.6487 13 8 5.6540 4.8256 -1.7718 14 6 6.0825 5.4224 0.6773 15 6 4.9962 6.2837 0.6528 16 6 4.7852 7.1796 1.6892 17 6 5.6605 7.2311 2.7502 18 6 6.7694 6.3659 2.7829 19 6 7.6750 6.4094 3.8680 20 1 8.6912 6.0678 3.7373 21 6 7.2545 6.8951 5.1112 22 7 5.9775 6.9788 5.3829 23 14 8.5166 7.4241 6.3827 24 1 9.8829 7.2315 5.8339 25 1 8.3136 8.8571 6.7153 26 1 8.3564 6.6037 7.6102 27 6 6.9704 5.4564 1.7279 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.9989 3.1540 1.3076 34 1 0.5489 2.1252 1.3970 35 1 2.0698 1.5874 2.1493 36 1 3.5907 1.2326 -2.1395 37 1 3.6401 3.4255 -0.9682 38 1 3.7863 3.3746 0.8049 39 1 6.0350 2.0719 -0.0938 40 1 4.3066 6.2529 -0.1778 41 1 3.9335 7.8432 1.6618 42 1 5.4964 7.9328 3.5547 43 1 5.6860 7.3158 6.2445 44 1 7.8182 4.7873 1.7431 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619485875.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:27 Heat of formation + Delta-G solvation = -155.264622 kcal Electronic energy + Delta-G solvation = -26103.818329 eV Core-core repulsion = 22338.862025 eV Total energy + Delta-G solvation = -3764.956304 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.76622 -39.44423 -38.24850 -36.90838 -35.99059 -35.67910 -35.33394 -31.91599 -31.58534 -31.26516 -28.02192 -27.35151 -25.90581 -23.67679 -23.01222 -22.74241 -21.31382 -20.50707 -19.59555 -18.54746 -17.94689 -17.73499 -17.06756 -16.72176 -16.65570 -16.37077 -15.81615 -15.64034 -15.21722 -15.05923 -15.01752 -14.45719 -14.31012 -14.10163 -13.70985 -13.42438 -13.31990 -13.25317 -13.14005 -13.08333 -13.04125 -12.81113 -12.74678 -12.61067 -12.52578 -12.38465 -12.21517 -12.04089 -11.55638 -11.46323 -11.36531 -11.30849 -11.15138 -10.82816 -10.32540 -9.85029 -9.56417 -8.74250 -6.45684 -0.48482 0.40252 0.83728 1.37085 1.43873 1.51751 2.14051 2.17258 2.55112 2.78648 3.38044 3.52129 3.55188 3.66145 3.86562 4.03320 4.19835 4.30318 4.31988 4.44718 4.53805 4.58060 4.63474 4.74742 4.80910 4.84490 4.89377 4.90597 5.04606 5.08123 5.14929 5.20188 5.20911 5.24221 5.31001 5.40705 5.53564 5.56340 5.59148 5.88508 5.93775 6.08622 6.11403 6.52364 6.79125 6.84312 6.85904 8.23700 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013272 B = 0.003497 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.248709 B = 8005.328827 C = 9093.786389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.115 4.115 4 H 0.087 0.913 5 C -0.158 4.158 6 C 0.114 3.886 7 H 0.103 0.897 8 O -0.565 6.565 9 C 0.076 3.924 10 N -1.100 6.100 11 S 2.721 3.279 12 O -0.999 6.999 13 O -0.985 6.985 14 C -0.638 4.638 15 C -0.147 4.147 16 C -0.121 4.121 17 C -0.141 4.141 18 C 0.062 3.938 19 C -0.498 4.498 20 H 0.076 0.924 21 C 0.039 3.961 22 N -0.819 5.819 23 Si 0.981 3.019 24 H -0.262 1.262 25 H -0.262 1.262 26 H -0.263 1.263 27 C -0.146 4.146 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.054 0.946 36 H 0.387 0.613 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.425 0.575 40 H 0.134 0.866 41 H 0.128 0.872 42 H 0.113 0.887 43 H 0.292 0.708 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.786 -9.774 -6.087 15.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.134 4.134 4 H 0.105 0.895 5 C -0.215 4.215 6 C 0.054 3.946 7 H 0.120 0.880 8 O -0.372 6.372 9 C -0.050 4.050 10 N -0.863 5.863 11 S 2.814 3.186 12 O -0.989 6.989 13 O -0.975 6.975 14 C -0.727 4.727 15 C -0.167 4.167 16 C -0.140 4.140 17 C -0.161 4.161 18 C 0.059 3.941 19 C -0.527 4.527 20 H 0.094 0.906 21 C -0.177 4.177 22 N -0.445 5.445 23 Si 0.802 3.198 24 H -0.185 1.185 25 H -0.187 1.187 26 H -0.188 1.188 27 C -0.167 4.167 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.237 0.763 37 H 0.107 0.893 38 H 0.096 0.904 39 H 0.261 0.739 40 H 0.152 0.848 41 H 0.146 0.854 42 H 0.131 0.869 43 H 0.103 0.897 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -10.277 -9.812 -6.304 15.544 hybrid contribution 0.296 0.736 1.267 1.495 sum -9.981 -9.076 -5.037 14.400 Atomic orbital electron populations 1.21820 0.95247 1.01837 1.02096 1.21454 0.96145 0.95122 1.02285 1.21799 0.94017 0.97823 0.99780 0.89472 1.21980 1.02415 1.00502 0.96636 1.22100 0.94213 0.90158 0.88168 0.87962 1.86552 1.77474 1.57024 1.16175 1.22336 0.78558 1.00624 1.03496 1.55070 1.15948 1.26053 1.89194 1.00712 0.71809 0.72730 0.73360 1.93497 1.33419 1.84343 1.87677 1.93485 1.75795 1.79392 1.48819 1.30251 1.05828 1.18578 1.18060 1.20468 0.97619 0.98994 0.99658 1.21148 0.99323 0.99346 0.94214 1.21643 0.96864 0.99352 0.98199 1.18039 0.93201 0.90297 0.92544 1.19868 0.98492 1.39265 0.95115 0.90571 1.26703 0.97812 0.92192 1.00959 1.69812 1.17177 1.33241 1.24244 0.85161 0.78662 0.78943 0.77025 1.18529 1.18652 1.18805 1.20846 0.99441 1.00540 0.95884 0.92521 0.92467 0.92413 0.91421 0.92477 0.92549 0.91100 0.92658 0.76344 0.89267 0.90441 0.73859 0.84845 0.85423 0.86898 0.89722 0.87455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.67 71.98 0.70 -1.20 16 2 C -0.11 -1.61 5.33 30.59 0.16 -1.44 16 3 C -0.11 -1.72 2.16 -10.79 -0.02 -1.75 16 4 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 5 C -0.16 -2.61 8.60 71.98 0.62 -1.99 16 6 C 0.11 2.09 2.64 30.59 0.08 2.17 16 7 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 8 O -0.57 -10.42 12.44 -148.98 -1.85 -12.27 16 9 C 0.08 1.72 5.53 86.38 0.48 2.20 16 10 N -1.10 -30.07 5.86 -187.50 -1.10 -31.17 16 11 S 2.72 98.36 5.74 -56.49 -0.32 98.03 16 12 O -1.00 -42.01 17.27 -128.00 -2.21 -44.22 16 13 O -0.99 -37.43 16.73 -128.00 -2.14 -39.57 16 14 C -0.64 -27.23 5.94 22.22 0.13 -27.10 16 15 C -0.15 -6.00 9.53 22.46 0.21 -5.79 16 16 C -0.12 -5.23 10.02 22.22 0.22 -5.00 16 17 C -0.14 -7.04 8.70 22.73 0.20 -6.84 16 18 C 0.06 3.30 5.58 -21.29 -0.12 3.18 16 19 C -0.50 -26.35 9.05 23.46 0.21 -26.14 16 20 H 0.08 3.96 7.91 -2.91 -0.02 3.93 16 21 C 0.04 1.90 5.14 85.25 0.44 2.33 16 22 N -0.82 -40.47 10.95 21.83 0.24 -40.23 16 23 Si 0.98 36.98 29.59 68.60 2.03 39.01 16 24 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 25 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 26 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 27 C -0.15 -7.15 9.26 22.73 0.21 -6.93 16 28 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 29 H 0.06 0.71 6.56 -2.39 -0.02 0.69 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 1.01 7.54 -2.39 -0.02 0.99 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.06 1.03 6.43 -2.39 -0.02 1.02 16 34 H 0.07 1.02 6.57 -2.39 -0.02 1.01 16 35 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 36 H 0.39 4.94 9.04 -74.06 -0.67 4.27 16 37 H 0.09 1.87 7.75 -2.39 -0.02 1.85 16 38 H 0.08 1.85 6.43 -2.39 -0.02 1.83 16 39 H 0.42 10.37 8.65 -96.74 -0.84 9.54 16 40 H 0.13 4.66 7.59 -2.91 -0.02 4.64 16 41 H 0.13 4.62 8.06 -2.91 -0.02 4.60 16 42 H 0.11 5.80 6.15 -2.91 -0.02 5.78 16 43 H 0.29 12.89 8.30 -92.70 -0.77 12.12 16 44 H 0.11 5.17 7.60 -2.91 -0.02 5.14 16 Total: -1.00 -65.49 370.48 -2.32 -67.81 By element: Atomic # 1 Polarization: 37.39 SS G_CDS: -0.48 Total: 36.91 kcal Atomic # 6 Polarization: -77.82 SS G_CDS: 3.52 Total: -74.29 kcal Atomic # 7 Polarization: -70.54 SS G_CDS: -0.86 Total: -71.40 kcal Atomic # 8 Polarization: -89.86 SS G_CDS: -6.20 Total: -96.07 kcal Atomic # 14 Polarization: 36.98 SS G_CDS: 2.03 Total: 39.01 kcal Atomic # 16 Polarization: 98.36 SS G_CDS: -0.32 Total: 98.03 kcal Total: -65.49 -2.32 -67.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619485875.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.456 kcal (2) G-P(sol) polarization free energy of solvation -65.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds