Wall clock time and date at job start Tue Mar 31 2020 15:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 114.00214 * 2 1 4 4 C 1.52997 * 109.47520 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47122 * 174.36462 * 4 3 2 6 6 N 1.46508 * 109.46863 * 294.36448 * 4 3 2 7 7 S 1.65601 * 119.99669 * 238.24283 * 6 4 3 8 8 O 1.42100 * 106.39824 * 173.38853 * 7 6 4 9 9 O 1.42100 * 106.40381 * 306.30758 * 7 6 4 10 10 C 1.76198 * 107.21752 * 59.84913 * 7 6 4 11 11 C 1.38657 * 119.87672 * 269.72407 * 10 7 6 12 12 C 1.38613 * 120.50043 * 179.72573 * 11 10 7 13 13 C 1.37641 * 120.24889 * 0.54907 * 12 11 10 14 14 C 1.40697 * 119.74418 * 359.73292 * 13 12 11 15 15 C 1.41393 * 120.24521 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99946 * 154.50042 * 15 14 13 17 17 C 1.39947 * 120.00147 * 334.50223 * 15 14 13 18 18 N 1.30814 * 120.00155 * 158.78063 * 17 15 14 19 19 Si 1.86799 * 119.99679 * 338.78170 * 17 15 14 20 20 H 1.48500 * 109.47328 * 95.04091 * 19 17 15 21 21 H 1.48499 * 109.47168 * 215.04495 * 19 17 15 22 22 H 1.48500 * 109.47224 * 335.04471 * 19 17 15 23 23 C 1.37594 * 119.87401 * 90.00301 * 10 7 6 24 24 C 1.53002 * 109.47094 * 54.36226 * 4 3 2 25 25 C 1.52996 * 109.47122 * 62.31676 * 24 4 3 26 26 C 1.53003 * 109.46851 * 182.31526 * 24 4 3 27 27 H 1.08997 * 109.46957 * 299.99376 * 1 2 3 28 28 H 1.08993 * 109.47197 * 60.00111 * 1 2 3 29 29 H 1.09003 * 109.47081 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46922 * 59.99707 * 3 2 1 31 31 H 1.08999 * 109.46827 * 300.00303 * 3 2 1 32 32 H 0.96991 * 120.00031 * 58.51324 * 6 4 3 33 33 H 1.08000 * 119.74626 * 0.02562 * 11 10 7 34 34 H 1.08000 * 119.87538 * 180.25710 * 12 11 10 35 35 H 1.07997 * 120.12974 * 179.74925 * 13 12 11 36 36 H 0.97001 * 119.99996 * 179.97438 * 18 17 15 37 37 H 1.08006 * 120.13151 * 359.97324 * 23 10 7 38 38 H 1.08999 * 109.47151 * 302.31292 * 24 4 3 39 39 H 1.08993 * 109.47476 * 58.74469 * 25 24 4 40 40 H 1.08999 * 109.47322 * 178.74815 * 25 24 4 41 41 H 1.09001 * 109.46980 * 298.74062 * 25 24 4 42 42 H 1.08996 * 109.47243 * 61.24760 * 26 24 4 43 43 H 1.09000 * 109.47069 * 181.25099 * 26 24 4 44 44 H 1.08998 * 109.47114 * 301.24761 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.9783 2.1755 -0.1016 6 7 3.9778 0.5779 1.2574 7 16 5.0332 1.3896 2.2420 8 8 5.1418 0.6221 3.4330 9 8 6.1508 1.7343 1.4349 10 6 4.2608 2.9066 2.6965 11 6 4.4479 4.0377 1.9166 12 6 3.8419 5.2364 2.2589 13 6 3.0554 5.3189 3.3855 14 6 2.8631 4.1790 4.1875 15 6 2.0569 4.2516 5.3468 16 1 1.5729 3.3631 5.7245 17 6 1.8860 5.4749 6.0048 18 7 0.8573 5.6558 6.7925 19 14 3.1268 6.8493 5.7584 20 1 2.6483 7.7624 4.6895 21 1 3.2827 7.6085 7.0250 22 1 4.4360 6.2695 5.3645 23 6 3.4788 2.9658 3.8271 24 6 3.9770 0.3068 -1.1733 25 6 3.5657 0.9693 -2.4896 26 6 5.4975 0.1387 -1.1403 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.6555 -0.3009 1.5115 33 1 5.0667 3.9831 1.0331 34 1 3.9912 6.1102 1.6419 35 1 2.5874 6.2548 3.6526 36 1 0.7391 6.5035 7.2489 37 1 3.3376 2.0846 4.4354 38 1 3.5016 -0.6709 -1.0945 39 1 4.0233 1.9562 -2.5583 40 1 3.8998 0.3549 -3.3256 41 1 2.4807 1.0688 -2.5228 42 1 5.7885 -0.3533 -0.2123 43 1 5.8144 -0.4683 -1.9884 44 1 5.9726 1.1181 -1.1968 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619486670.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:55 Heat of formation + Delta-G solvation = -116.149121 kcal Electronic energy + Delta-G solvation = -27026.905913 eV Core-core repulsion = 23263.645784 eV Total energy + Delta-G solvation = -3763.260129 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -38.82488 -37.94291 -36.79962 -36.29014 -35.35545 -33.87024 -32.83460 -30.78354 -30.19177 -29.03409 -26.87358 -26.07749 -25.43654 -23.08208 -22.44824 -20.96537 -20.14698 -19.24274 -18.10695 -17.03448 -16.54550 -16.35973 -16.08070 -15.65351 -15.46244 -15.23612 -14.94215 -14.61111 -14.11514 -13.87545 -13.31469 -13.21481 -12.91777 -12.79015 -12.57096 -12.26059 -12.18606 -12.13236 -11.90741 -11.71096 -11.63251 -11.53766 -11.46169 -11.37346 -11.11982 -11.06018 -10.83356 -10.79282 -10.58703 -10.35981 -10.07038 -9.76344 -9.64067 -9.38511 -9.14524 -8.31327 -7.95626 -7.17790 -4.69058 0.92798 1.88783 2.38196 2.94492 3.07905 3.16580 3.43125 3.75351 3.79682 4.08690 4.30445 4.64154 4.81600 4.93576 5.06765 5.12969 5.22420 5.25246 5.31944 5.37920 5.43332 5.53772 5.62550 5.72753 5.78381 5.86467 5.92142 5.93957 5.98220 6.03307 6.13675 6.16451 6.40817 6.43489 6.51344 6.55834 6.80804 7.03157 7.11233 7.16803 7.23862 7.36514 7.57005 7.73624 8.11573 8.38309 8.55074 9.83417 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015163 B = 0.004301 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.184511 B = 6508.145374 C = 7141.482743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.046 3.954 4 C 0.167 3.833 5 H 0.102 0.898 6 N -1.109 6.109 7 S 2.685 3.315 8 O -0.971 6.971 9 O -0.968 6.968 10 C -0.623 4.623 11 C -0.167 4.167 12 C -0.088 4.088 13 C -0.207 4.207 14 C 0.074 3.926 15 C -0.439 4.439 16 H 0.095 0.905 17 C 0.084 3.916 18 N -0.793 5.793 19 Si 0.909 3.091 20 H -0.268 1.268 21 H -0.287 1.287 22 H -0.243 1.243 23 C -0.104 4.104 24 C -0.101 4.101 25 C -0.147 4.147 26 C -0.147 4.147 27 H 0.043 0.957 28 H 0.038 0.962 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.418 0.582 33 H 0.111 0.889 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.289 0.711 37 H 0.118 0.882 38 H 0.084 0.916 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.050 0.950 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.528 -6.322 -14.333 15.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C -0.032 4.032 4 C 0.059 3.941 5 H 0.120 0.880 6 N -0.867 5.867 7 S 2.780 3.220 8 O -0.961 6.961 9 O -0.957 6.957 10 C -0.714 4.714 11 C -0.188 4.188 12 C -0.107 4.107 13 C -0.226 4.226 14 C 0.069 3.931 15 C -0.466 4.466 16 H 0.113 0.887 17 C -0.137 4.137 18 N -0.415 5.415 19 Si 0.735 3.265 20 H -0.194 1.194 21 H -0.214 1.214 22 H -0.166 1.166 23 C -0.125 4.125 24 C -0.121 4.121 25 C -0.205 4.205 26 C -0.205 4.205 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.101 0.899 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.253 0.747 33 H 0.129 0.871 34 H 0.120 0.880 35 H 0.123 0.877 36 H 0.100 0.900 37 H 0.136 0.864 38 H 0.102 0.898 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.359 -6.518 -13.904 15.416 hybrid contribution -0.695 1.240 0.270 1.447 sum 0.664 -5.278 -13.634 14.635 Atomic orbital electron populations 1.22725 0.81257 1.02466 1.00108 1.87821 1.19409 1.27662 1.95450 1.23043 0.93637 0.85147 1.01383 1.20874 0.92278 0.97323 0.83646 0.87984 1.55537 1.67209 1.31319 1.32615 1.01863 0.73531 0.74017 0.72627 1.93553 1.85947 1.70317 1.46283 1.93536 1.48143 1.84579 1.69483 1.29951 1.16674 1.18015 1.06740 1.20031 1.05126 0.92657 1.01032 1.20677 0.96916 0.96466 0.96653 1.21265 1.05308 0.98867 0.97169 1.17768 0.90785 0.91310 0.93188 1.19560 1.23184 0.96500 1.07371 0.88682 1.26202 0.94864 0.99484 0.93115 1.69693 1.23878 1.26307 1.21661 0.86356 0.83104 0.79777 0.77216 1.19418 1.21371 1.16642 1.20799 0.97125 0.99118 0.95451 1.21382 0.96834 1.00232 0.93649 1.21857 1.01264 1.00761 0.96580 1.21849 0.94660 1.02575 1.01376 0.93799 0.94352 0.89868 0.91805 0.92223 0.74713 0.87112 0.87985 0.87679 0.90047 0.86358 0.89777 0.92519 0.92504 0.92520 0.92635 0.93085 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.38 -4.59 9.68 -35.23 -0.34 -4.93 16 3 C 0.05 0.56 5.32 37.16 0.20 0.75 16 4 C 0.17 2.09 2.22 -67.93 -0.15 1.94 16 5 H 0.10 1.29 7.31 -51.93 -0.38 0.91 16 6 N -1.11 -15.53 4.50 -4.89 -0.02 -15.55 16 7 S 2.68 47.83 5.56 -107.50 -0.60 47.23 16 8 O -0.97 -19.99 17.27 -57.17 -0.99 -20.98 16 9 O -0.97 -18.17 16.32 -57.17 -0.93 -19.10 16 10 C -0.62 -12.64 5.83 -39.66 -0.23 -12.87 16 11 C -0.17 -3.28 9.03 -39.29 -0.35 -3.64 16 12 C -0.09 -1.78 10.02 -39.66 -0.40 -2.18 16 13 C -0.21 -4.70 7.27 -38.87 -0.28 -4.99 16 14 C 0.07 1.79 5.19 -106.82 -0.55 1.24 16 15 C -0.44 -11.34 9.57 -37.74 -0.36 -11.70 16 16 H 0.10 2.55 8.06 -52.49 -0.42 2.13 16 17 C 0.08 2.11 5.39 -17.35 -0.09 2.02 16 18 N -0.79 -20.07 13.93 55.55 0.77 -19.30 16 19 Si 0.91 19.86 24.50 -169.99 -4.16 15.69 16 20 H -0.27 -5.59 6.61 56.52 0.37 -5.21 16 21 H -0.29 -6.03 7.11 56.52 0.40 -5.62 16 22 H -0.24 -5.52 6.92 56.52 0.39 -5.13 16 23 C -0.10 -2.36 9.26 -38.87 -0.36 -2.72 16 24 C -0.10 -1.11 2.52 -90.62 -0.23 -1.33 16 25 C -0.15 -1.35 8.86 37.16 0.33 -1.02 16 26 C -0.15 -1.73 8.39 37.16 0.31 -1.42 16 27 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.61 6.81 -51.93 -0.35 0.26 16 32 H 0.42 5.26 8.93 -34.47 -0.31 4.96 16 33 H 0.11 1.91 7.58 -52.49 -0.40 1.52 16 34 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 35 H 0.11 2.36 4.36 -52.49 -0.23 2.13 16 36 H 0.29 6.58 8.30 -40.82 -0.34 6.25 16 37 H 0.12 2.62 7.60 -52.48 -0.40 2.22 16 38 H 0.08 0.93 7.47 -51.93 -0.39 0.54 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.49 6.68 -51.93 -0.35 0.15 16 42 H 0.05 0.71 7.45 -51.93 -0.39 0.32 16 43 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 LS Contribution 365.96 15.07 5.52 5.52 Total: -1.00 -29.56 365.96 -8.41 -37.97 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -6.59 Total: 7.97 kcal Atomic # 6 Polarization: -33.45 SS G_CDS: -1.06 Total: -34.51 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 0.75 Total: -34.85 kcal Atomic # 8 Polarization: -42.75 SS G_CDS: -2.26 Total: -45.01 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -4.16 Total: 15.69 kcal Atomic # 16 Polarization: 47.83 SS G_CDS: -0.60 Total: 47.23 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.56 -8.41 -37.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619486670.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.179 kcal (2) G-P(sol) polarization free energy of solvation -29.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds