Wall clock time and date at job start Tue Mar 31 2020 15:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 114.00214 * 2 1 4 4 C 1.52997 * 109.47520 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47122 * 174.36462 * 4 3 2 6 6 N 1.46508 * 109.46863 * 294.36448 * 4 3 2 7 7 S 1.65601 * 119.99669 * 238.24283 * 6 4 3 8 8 O 1.42100 * 106.39824 * 173.38853 * 7 6 4 9 9 O 1.42100 * 106.40381 * 306.30758 * 7 6 4 10 10 C 1.76198 * 107.21752 * 59.84913 * 7 6 4 11 11 C 1.38657 * 119.87672 * 269.72407 * 10 7 6 12 12 C 1.38613 * 120.50043 * 179.72573 * 11 10 7 13 13 C 1.37641 * 120.24889 * 0.54907 * 12 11 10 14 14 C 1.40697 * 119.74418 * 359.73292 * 13 12 11 15 15 C 1.41393 * 120.24521 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99946 * 154.50042 * 15 14 13 17 17 C 1.39947 * 120.00147 * 334.50223 * 15 14 13 18 18 N 1.30814 * 120.00155 * 158.78063 * 17 15 14 19 19 Si 1.86799 * 119.99679 * 338.78170 * 17 15 14 20 20 H 1.48500 * 109.47328 * 95.04091 * 19 17 15 21 21 H 1.48499 * 109.47168 * 215.04495 * 19 17 15 22 22 H 1.48500 * 109.47224 * 335.04471 * 19 17 15 23 23 C 1.37594 * 119.87401 * 90.00301 * 10 7 6 24 24 C 1.53002 * 109.47094 * 54.36226 * 4 3 2 25 25 C 1.52996 * 109.47122 * 62.31676 * 24 4 3 26 26 C 1.53003 * 109.46851 * 182.31526 * 24 4 3 27 27 H 1.08997 * 109.46957 * 299.99376 * 1 2 3 28 28 H 1.08993 * 109.47197 * 60.00111 * 1 2 3 29 29 H 1.09003 * 109.47081 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46922 * 59.99707 * 3 2 1 31 31 H 1.08999 * 109.46827 * 300.00303 * 3 2 1 32 32 H 0.96991 * 120.00031 * 58.51324 * 6 4 3 33 33 H 1.08000 * 119.74626 * 0.02562 * 11 10 7 34 34 H 1.08000 * 119.87538 * 180.25710 * 12 11 10 35 35 H 1.07997 * 120.12974 * 179.74925 * 13 12 11 36 36 H 0.97001 * 119.99996 * 179.97438 * 18 17 15 37 37 H 1.08006 * 120.13151 * 359.97324 * 23 10 7 38 38 H 1.08999 * 109.47151 * 302.31292 * 24 4 3 39 39 H 1.08993 * 109.47476 * 58.74469 * 25 24 4 40 40 H 1.08999 * 109.47322 * 178.74815 * 25 24 4 41 41 H 1.09001 * 109.46980 * 298.74062 * 25 24 4 42 42 H 1.08996 * 109.47243 * 61.24760 * 26 24 4 43 43 H 1.09000 * 109.47069 * 181.25099 * 26 24 4 44 44 H 1.08998 * 109.47114 * 301.24761 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.9783 2.1755 -0.1016 6 7 3.9778 0.5779 1.2574 7 16 5.0332 1.3896 2.2420 8 8 5.1418 0.6221 3.4330 9 8 6.1508 1.7343 1.4349 10 6 4.2608 2.9066 2.6965 11 6 4.4479 4.0377 1.9166 12 6 3.8419 5.2364 2.2589 13 6 3.0554 5.3189 3.3855 14 6 2.8631 4.1790 4.1875 15 6 2.0569 4.2516 5.3468 16 1 1.5729 3.3631 5.7245 17 6 1.8860 5.4749 6.0048 18 7 0.8573 5.6558 6.7925 19 14 3.1268 6.8493 5.7584 20 1 2.6483 7.7624 4.6895 21 1 3.2827 7.6085 7.0250 22 1 4.4360 6.2695 5.3645 23 6 3.4788 2.9658 3.8271 24 6 3.9770 0.3068 -1.1733 25 6 3.5657 0.9693 -2.4896 26 6 5.4975 0.1387 -1.1403 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.6555 -0.3009 1.5115 33 1 5.0667 3.9831 1.0331 34 1 3.9912 6.1102 1.6419 35 1 2.5874 6.2548 3.6526 36 1 0.7391 6.5035 7.2489 37 1 3.3376 2.0846 4.4354 38 1 3.5016 -0.6709 -1.0945 39 1 4.0233 1.9562 -2.5583 40 1 3.8998 0.3549 -3.3256 41 1 2.4807 1.0688 -2.5228 42 1 5.7885 -0.3533 -0.2123 43 1 5.8144 -0.4683 -1.9884 44 1 5.9726 1.1181 -1.1968 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619486670.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:55 Heat of formation + Delta-G solvation = -136.920118 kcal Electronic energy + Delta-G solvation = -27027.806611 eV Core-core repulsion = 23263.645784 eV Total energy + Delta-G solvation = -3764.160827 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.82453 -39.63537 -38.26909 -37.29349 -36.89529 -35.69121 -33.86828 -32.56562 -31.88987 -29.99618 -27.67315 -27.28157 -26.90014 -24.14081 -24.03045 -22.69758 -21.13862 -20.68895 -19.72565 -18.45459 -18.08931 -17.65147 -17.13559 -16.92977 -16.74180 -16.55537 -16.31283 -16.00354 -15.55510 -15.01752 -14.82117 -14.68315 -14.18129 -14.04978 -13.80107 -13.66293 -13.51368 -13.38549 -13.23249 -13.08055 -13.00587 -12.91409 -12.88369 -12.53371 -12.52849 -12.33770 -12.10242 -11.95709 -11.81962 -11.71855 -11.51623 -11.45175 -11.04239 -10.53695 -10.35993 -10.00805 -9.73070 -9.02265 -6.60966 -0.54030 0.17920 0.64623 1.19108 1.35670 1.42119 2.00423 2.07088 2.38918 2.71320 2.91343 3.30746 3.46111 3.68536 3.95977 4.14408 4.17306 4.28214 4.33399 4.38100 4.44518 4.47011 4.57418 4.62771 4.66705 4.75910 4.81994 4.89033 4.91213 4.96516 4.98734 5.04163 5.15130 5.18454 5.33282 5.34122 5.43440 5.55679 5.62300 5.63930 5.74160 5.97974 6.10574 6.21698 6.24859 6.57144 6.66362 8.05554 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015163 B = 0.004301 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.184511 B = 6508.145374 C = 7141.482743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.395 6.395 3 C 0.048 3.952 4 C 0.157 3.843 5 H 0.105 0.895 6 N -1.097 6.097 7 S 2.710 3.290 8 O -1.001 7.001 9 O -0.970 6.970 10 C -0.629 4.629 11 C -0.148 4.148 12 C -0.090 4.090 13 C -0.212 4.212 14 C 0.057 3.943 15 C -0.481 4.481 16 H 0.060 0.940 17 C 0.051 3.949 18 N -0.833 5.833 19 Si 0.959 3.041 20 H -0.246 1.246 21 H -0.274 1.274 22 H -0.257 1.257 23 C -0.127 4.127 24 C -0.094 4.094 25 C -0.145 4.145 26 C -0.150 4.150 27 H 0.032 0.968 28 H 0.055 0.945 29 H 0.098 0.902 30 H 0.041 0.959 31 H 0.083 0.917 32 H 0.426 0.574 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.109 0.891 36 H 0.298 0.702 37 H 0.108 0.892 38 H 0.084 0.916 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.040 0.960 43 H 0.068 0.932 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.713 -5.565 -17.785 18.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.315 6.315 3 C -0.031 4.031 4 C 0.050 3.950 5 H 0.123 0.877 6 N -0.858 5.858 7 S 2.802 3.198 8 O -0.991 6.991 9 O -0.960 6.960 10 C -0.718 4.718 11 C -0.168 4.168 12 C -0.108 4.108 13 C -0.232 4.232 14 C 0.053 3.947 15 C -0.510 4.510 16 H 0.078 0.922 17 C -0.165 4.165 18 N -0.458 5.458 19 Si 0.781 3.219 20 H -0.171 1.171 21 H -0.200 1.200 22 H -0.181 1.181 23 C -0.148 4.148 24 C -0.114 4.114 25 C -0.203 4.203 26 C -0.208 4.208 27 H 0.050 0.950 28 H 0.073 0.927 29 H 0.117 0.883 30 H 0.060 0.940 31 H 0.101 0.899 32 H 0.263 0.737 33 H 0.163 0.837 34 H 0.162 0.838 35 H 0.127 0.873 36 H 0.109 0.891 37 H 0.126 0.874 38 H 0.102 0.898 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.059 0.941 43 H 0.087 0.913 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.520 -5.744 -17.352 18.451 hybrid contribution -0.996 0.838 1.114 1.713 sum 1.524 -4.906 -16.239 17.032 Atomic orbital electron populations 1.22881 0.80159 1.03653 1.00365 1.87800 1.20622 1.27521 1.95514 1.23006 0.93251 0.85378 1.01434 1.21174 0.92778 0.97815 0.83226 0.87718 1.55242 1.66813 1.31162 1.32550 1.01125 0.73502 0.73013 0.72120 1.93512 1.86565 1.70641 1.48390 1.93530 1.48545 1.84617 1.69308 1.30389 1.15478 1.20075 1.05823 1.20594 1.03328 0.91897 1.00999 1.21152 0.95529 0.98217 0.95948 1.21474 1.05582 0.98327 0.97790 1.17915 0.90974 0.92732 0.93070 1.19519 1.25784 0.96135 1.09564 0.92189 1.26826 0.96009 1.01019 0.92692 1.69711 1.25242 1.27545 1.23306 0.85617 0.80181 0.77740 0.78334 1.17069 1.20026 1.18098 1.20791 0.98572 0.98592 0.96844 1.21334 0.96241 1.00055 0.93779 1.21856 1.01738 1.01032 0.95645 1.21882 0.95153 1.02276 1.01464 0.94950 0.92668 0.88326 0.94030 0.89885 0.73748 0.83714 0.83750 0.87336 0.89134 0.87423 0.89756 0.92059 0.91302 0.91902 0.94063 0.91315 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 113.37 1.25 1.71 16 2 O -0.40 -8.75 9.68 -148.98 -1.44 -10.19 16 3 C 0.05 1.05 5.32 71.98 0.38 1.44 16 4 C 0.16 3.58 2.22 44.99 0.10 3.68 16 5 H 0.10 2.32 7.31 -2.39 -0.02 2.30 16 6 N -1.10 -29.33 4.50 -169.38 -0.76 -30.09 16 7 S 2.71 93.63 5.56 -56.49 -0.31 93.32 16 8 O -1.00 -41.38 17.27 -128.00 -2.21 -43.59 16 9 O -0.97 -34.22 16.32 -128.00 -2.09 -36.31 16 10 C -0.63 -24.88 5.83 22.22 0.13 -24.75 16 11 C -0.15 -5.31 9.03 22.46 0.20 -5.11 16 12 C -0.09 -3.33 10.02 22.22 0.22 -3.10 16 13 C -0.21 -9.41 7.27 22.73 0.17 -9.24 16 14 C 0.06 2.83 5.19 -21.29 -0.11 2.71 16 15 C -0.48 -26.44 9.57 23.46 0.22 -26.21 16 16 H 0.06 3.55 8.06 -2.91 -0.02 3.53 16 17 C 0.05 2.66 5.39 85.26 0.46 3.12 16 18 N -0.83 -43.99 13.93 21.83 0.30 -43.68 16 19 Si 0.96 40.71 24.50 68.60 1.68 42.39 16 20 H -0.25 -9.48 6.61 99.48 0.66 -8.82 16 21 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 22 H -0.26 -11.36 6.92 99.48 0.69 -10.68 16 23 C -0.13 -5.93 9.26 22.73 0.21 -5.72 16 24 C -0.09 -1.79 2.52 -10.79 -0.03 -1.82 16 25 C -0.14 -2.14 8.86 71.98 0.64 -1.50 16 26 C -0.15 -3.15 8.39 71.98 0.60 -2.54 16 27 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.10 1.43 8.14 -2.39 -0.02 1.42 16 30 H 0.04 1.10 8.14 -2.38 -0.02 1.09 16 31 H 0.08 1.45 6.81 -2.39 -0.02 1.43 16 32 H 0.43 10.35 8.93 -96.75 -0.86 9.49 16 33 H 0.15 4.27 7.58 -2.91 -0.02 4.25 16 34 H 0.14 4.16 8.06 -2.91 -0.02 4.13 16 35 H 0.11 4.69 4.36 -2.91 -0.01 4.68 16 36 H 0.30 13.99 8.30 -92.71 -0.77 13.22 16 37 H 0.11 5.10 7.60 -2.91 -0.02 5.07 16 38 H 0.08 1.64 7.47 -2.39 -0.02 1.62 16 39 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.07 0.87 8.14 -2.39 -0.02 0.86 16 41 H 0.06 0.86 6.68 -2.39 -0.02 0.84 16 42 H 0.04 0.96 7.45 -2.39 -0.02 0.95 16 43 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.06 1.26 8.10 -2.39 -0.02 1.24 16 Total: -1.00 -65.40 365.96 -0.31 -65.71 By element: Atomic # 1 Polarization: 29.72 SS G_CDS: 0.08 Total: 29.79 kcal Atomic # 6 Polarization: -71.80 SS G_CDS: 4.45 Total: -67.35 kcal Atomic # 7 Polarization: -73.31 SS G_CDS: -0.46 Total: -73.77 kcal Atomic # 8 Polarization: -84.35 SS G_CDS: -5.74 Total: -90.09 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 1.68 Total: 42.39 kcal Atomic # 16 Polarization: 93.63 SS G_CDS: -0.31 Total: 93.32 kcal Total: -65.40 -0.31 -65.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619486670.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.209 kcal (2) G-P(sol) polarization free energy of solvation -65.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds