Wall clock time and date at job start Tue Mar 31 2020 15:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47283 * 2 1 4 4 H 1.09000 * 109.47213 * 54.99923 * 3 2 1 5 5 O 1.42907 * 109.46873 * 295.00116 * 3 2 1 6 6 C 1.53000 * 109.47484 * 175.00259 * 3 2 1 7 7 C 1.53001 * 109.47278 * 185.00010 * 6 3 2 8 8 C 1.52993 * 109.47009 * 179.97438 * 7 6 3 9 9 N 1.46503 * 109.47174 * 179.97438 * 8 7 6 10 10 S 1.65599 * 120.00012 * 165.27283 * 9 8 7 11 11 O 1.42099 * 106.40254 * 178.26555 * 10 9 8 12 12 O 1.42099 * 106.40561 * 311.18985 * 10 9 8 13 13 C 1.76199 * 107.21742 * 64.72792 * 10 9 8 14 14 C 1.38663 * 119.87803 * 269.72779 * 13 10 9 15 15 C 1.38608 * 120.49900 * 179.72590 * 14 13 10 16 16 C 1.37643 * 120.25314 * 0.54496 * 15 14 13 17 17 C 1.40701 * 119.74074 * 359.72925 * 16 15 14 18 18 C 1.41392 * 120.24352 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00124 * 150.22284 * 18 17 16 20 20 C 1.39956 * 119.99767 * 330.22192 * 18 17 16 21 21 N 1.30820 * 119.99575 * 161.72579 * 20 18 17 22 22 Si 1.86798 * 120.00009 * 341.72427 * 20 18 17 23 23 H 1.48503 * 109.46818 * 95.41225 * 22 20 18 24 24 H 1.48497 * 109.46908 * 215.41096 * 22 20 18 25 25 H 1.48501 * 109.47252 * 335.41469 * 22 20 18 26 26 C 1.37597 * 119.87535 * 90.00185 * 13 10 9 27 27 H 1.08998 * 109.46795 * 299.99995 * 1 2 3 28 28 H 1.08998 * 109.47122 * 59.99901 * 1 2 3 29 29 H 1.09005 * 109.46734 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46743 * 240.00104 * 2 1 3 31 31 H 1.08998 * 109.47122 * 120.00099 * 2 1 3 32 32 H 0.96693 * 113.99748 * 299.99924 * 5 3 2 33 33 H 1.09000 * 109.47036 * 65.00032 * 6 3 2 34 34 H 1.09004 * 109.46750 * 305.00080 * 6 3 2 35 35 H 1.09000 * 109.47069 * 60.00043 * 7 6 3 36 36 H 1.09001 * 109.46833 * 299.99982 * 7 6 3 37 37 H 1.09002 * 109.47474 * 59.99756 * 8 7 6 38 38 H 1.09001 * 109.47367 * 299.99727 * 8 7 6 39 39 H 0.97000 * 119.99787 * 345.00282 * 9 8 7 40 40 H 1.07996 * 119.73979 * 359.97438 * 14 13 10 41 41 H 1.08000 * 119.87490 * 180.25925 * 15 14 13 42 42 H 1.07995 * 120.12566 * 179.75233 * 16 15 14 43 43 H 0.96995 * 119.99795 * 179.97438 * 21 20 18 44 44 H 1.07998 * 120.12646 * 359.97175 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 8 1.6619 2.0813 -1.2211 6 6 3.5649 1.4443 0.1257 7 6 4.0645 2.8850 0.2511 8 6 5.5892 2.8868 0.3773 9 7 6.0678 4.2663 0.4968 10 16 7.6141 4.5649 1.0085 11 8 7.7813 5.9757 0.9786 12 8 7.8071 3.7840 2.1799 13 6 8.7030 3.9089 -0.2116 14 6 9.1468 2.5993 -0.1090 15 6 9.9990 2.0684 -1.0645 16 6 10.4234 2.8413 -2.1214 17 6 9.9841 4.1733 -2.2327 18 6 10.4129 4.9767 -3.3143 19 1 9.7744 5.7629 -3.6894 20 6 11.6647 4.7530 -3.8989 21 7 11.9233 5.2248 -5.0913 22 14 12.9659 3.7808 -2.9764 23 1 12.9171 2.3593 -3.4034 24 1 14.3078 4.3418 -3.2760 25 1 12.7073 3.8683 -1.5168 26 6 9.1144 4.7000 -1.2596 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5138 0.8900 32 1 2.0141 1.6542 -2.0139 33 1 4.0029 0.9836 -0.7597 34 1 3.8571 0.8800 1.0113 35 1 3.6264 3.3457 1.1364 36 1 3.7722 3.4493 -0.6345 37 1 6.0277 2.4259 -0.5078 38 1 5.8811 2.3226 1.2631 39 1 5.4800 5.0046 0.2724 40 1 8.8226 1.9871 0.7196 41 1 10.3351 1.0457 -0.9769 42 1 11.0906 2.4268 -2.8626 43 1 12.7910 5.0701 -5.4963 44 1 8.7707 5.7210 -1.3354 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619486679.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:52 Heat of formation + Delta-G solvation = -135.976275 kcal Electronic energy + Delta-G solvation = -25361.896795 eV Core-core repulsion = 21597.776896 eV Total energy + Delta-G solvation = -3764.119899 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -38.61381 -37.94948 -36.80415 -35.94429 -35.40031 -33.80877 -33.22111 -32.08227 -30.75466 -30.19179 -27.54292 -25.41918 -23.94220 -22.43224 -21.65372 -21.54685 -20.92351 -19.18624 -18.06144 -17.03628 -16.75218 -16.37909 -16.28873 -15.96209 -15.47440 -15.12043 -14.92020 -14.74274 -14.30546 -13.86829 -13.72940 -13.23042 -13.15235 -12.90381 -12.64495 -12.47041 -12.29841 -12.14677 -11.90890 -11.74866 -11.71465 -11.62870 -11.48517 -11.37450 -11.28971 -11.08536 -11.00593 -10.94873 -10.81967 -10.37001 -10.08121 -10.03973 -9.80737 -9.43083 -9.17461 -8.30803 -7.91021 -7.11330 -4.66789 0.90117 1.88273 2.38523 2.97044 3.09644 3.18746 3.43332 3.83256 4.04469 4.09260 4.30111 4.34577 4.61293 4.68249 4.82526 4.87589 4.97166 5.06920 5.12362 5.22536 5.29676 5.42318 5.49781 5.58668 5.61684 5.63828 5.77603 5.83280 5.89442 5.91605 5.98008 6.07081 6.17295 6.19924 6.42904 6.55294 6.83645 7.02479 7.15027 7.16722 7.35910 7.38574 7.58934 7.74650 8.15446 8.39643 8.58784 9.90510 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015017 B = 0.002884 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.052689 B = 9706.004735 C =10504.443355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.158 4.158 3 C 0.105 3.895 4 H 0.098 0.902 5 O -0.561 6.561 6 C -0.153 4.153 7 C -0.122 4.122 8 C 0.117 3.883 9 N -1.121 6.121 10 S 2.691 3.309 11 O -0.969 6.969 12 O -0.973 6.973 13 C -0.625 4.625 14 C -0.159 4.159 15 C -0.092 4.092 16 C -0.198 4.198 17 C 0.073 3.927 18 C -0.443 4.443 19 H 0.096 0.904 20 C 0.084 3.916 21 N -0.799 5.799 22 Si 0.906 3.094 23 H -0.268 1.268 24 H -0.286 1.286 25 H -0.243 1.243 26 C -0.102 4.102 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.374 0.626 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.415 0.585 40 H 0.111 0.889 41 H 0.103 0.897 42 H 0.106 0.894 43 H 0.288 0.712 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.726 -9.431 6.976 19.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.195 4.195 3 C 0.046 3.954 4 H 0.115 0.885 5 O -0.366 6.366 6 C -0.191 4.191 7 C -0.161 4.161 8 C -0.009 4.009 9 N -0.879 5.879 10 S 2.785 3.215 11 O -0.960 6.960 12 O -0.963 6.963 13 C -0.716 4.716 14 C -0.180 4.180 15 C -0.112 4.112 16 C -0.218 4.218 17 C 0.069 3.931 18 C -0.471 4.471 19 H 0.113 0.887 20 C -0.136 4.136 21 N -0.423 5.423 22 Si 0.732 3.268 23 H -0.194 1.194 24 H -0.213 1.213 25 H -0.166 1.166 26 C -0.123 4.123 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.221 0.779 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.248 0.752 40 H 0.129 0.871 41 H 0.121 0.879 42 H 0.124 0.876 43 H 0.098 0.902 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -15.548 -8.660 7.985 19.506 hybrid contribution 1.063 -0.928 -1.012 1.737 sum -14.485 -9.588 6.974 18.718 Atomic orbital electron populations 1.21708 0.95252 1.01361 1.02366 1.22260 0.97038 0.97418 1.02832 1.21994 0.93128 0.92481 0.87771 0.88450 1.86581 1.76984 1.57362 1.15718 1.22287 0.96110 0.97360 1.03371 1.21703 0.94019 0.97030 1.03318 1.21292 0.95361 0.81990 1.02239 1.55545 1.31778 1.13709 1.86885 1.01660 0.72456 0.73137 0.74212 1.93556 1.85268 1.29761 1.87377 1.93516 1.85244 1.72036 1.45475 1.29964 1.19273 1.05180 1.17217 1.20061 1.03823 0.93647 1.00499 1.20701 0.97535 0.98220 0.94698 1.21303 1.05558 0.94673 1.00260 1.17799 0.91939 0.91693 0.91712 1.19523 1.01883 1.15392 1.10279 0.88656 1.26167 0.99986 0.93770 0.93725 1.69675 1.23986 1.36209 1.12389 0.86370 0.78431 0.79192 0.82774 1.19424 1.21292 1.16635 1.20858 1.01127 0.97640 0.92639 0.92811 0.92087 0.92968 0.91600 0.91034 0.77860 0.91041 0.90585 0.91267 0.90452 0.91419 0.90539 0.75164 0.87077 0.87916 0.87613 0.90158 0.86233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.81 37.16 0.36 -0.58 16 2 C -0.16 -0.96 5.61 -26.73 -0.15 -1.11 16 3 C 0.11 0.75 2.97 -26.73 -0.08 0.67 16 4 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 5 O -0.56 -4.64 12.41 -35.23 -0.44 -5.07 16 6 C -0.15 -1.11 4.89 -26.73 -0.13 -1.24 16 7 C -0.12 -1.09 5.25 -26.73 -0.14 -1.23 16 8 C 0.12 1.34 6.22 -4.04 -0.03 1.31 16 9 N -1.12 -14.84 6.00 -10.61 -0.06 -14.90 16 10 S 2.69 47.54 5.73 -107.50 -0.62 46.92 16 11 O -0.97 -19.61 17.26 -57.17 -0.99 -20.60 16 12 O -0.97 -18.76 16.74 -57.17 -0.96 -19.72 16 13 C -0.63 -12.77 5.93 -39.66 -0.24 -13.01 16 14 C -0.16 -3.17 9.53 -39.29 -0.37 -3.55 16 15 C -0.09 -1.89 10.02 -39.66 -0.40 -2.29 16 16 C -0.20 -4.56 7.18 -38.87 -0.28 -4.84 16 17 C 0.07 1.78 5.11 -106.82 -0.55 1.24 16 18 C -0.44 -11.57 9.57 -37.74 -0.36 -11.93 16 19 H 0.10 2.58 8.06 -52.49 -0.42 2.16 16 20 C 0.08 2.12 5.40 -17.34 -0.09 2.03 16 21 N -0.80 -20.56 13.93 55.55 0.77 -19.78 16 22 Si 0.91 20.06 24.52 -169.99 -4.17 15.89 16 23 H -0.27 -5.66 6.71 56.52 0.38 -5.28 16 24 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.24 -5.58 6.86 56.52 0.39 -5.19 16 26 C -0.10 -2.32 9.26 -38.87 -0.36 -2.68 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.42 7.82 -51.93 -0.41 0.02 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.37 8.14 -51.92 -0.42 -0.05 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.37 2.02 9.04 45.56 0.41 2.44 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.72 7.82 -51.93 -0.41 0.31 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.87 7.76 -51.93 -0.40 0.46 16 39 H 0.41 4.63 8.65 -34.47 -0.30 4.33 16 40 H 0.11 1.96 7.59 -52.49 -0.40 1.56 16 41 H 0.10 1.78 8.06 -52.49 -0.42 1.35 16 42 H 0.11 2.39 4.73 -52.49 -0.25 2.14 16 43 H 0.29 6.68 8.30 -40.82 -0.34 6.34 16 44 H 0.12 2.63 7.60 -52.49 -0.40 2.23 16 LS Contribution 372.76 15.07 5.62 5.62 Total: -1.00 -31.36 372.76 -9.62 -40.98 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -5.97 Total: 7.87 kcal Atomic # 6 Polarization: -34.39 SS G_CDS: -2.81 Total: -37.20 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: 0.71 Total: -34.69 kcal Atomic # 8 Polarization: -43.01 SS G_CDS: -2.38 Total: -45.39 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.17 Total: 15.89 kcal Atomic # 16 Polarization: 47.54 SS G_CDS: -0.62 Total: 46.92 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.36 -9.62 -40.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619486679.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.996 kcal (2) G-P(sol) polarization free energy of solvation -31.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds