Wall clock time and date at job start Tue Mar 31 2020 15:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47283 * 2 1 4 4 H 1.09000 * 109.47213 * 54.99923 * 3 2 1 5 5 O 1.42907 * 109.46873 * 295.00116 * 3 2 1 6 6 C 1.53000 * 109.47484 * 175.00259 * 3 2 1 7 7 C 1.53001 * 109.47278 * 185.00010 * 6 3 2 8 8 C 1.52993 * 109.47009 * 179.97438 * 7 6 3 9 9 N 1.46503 * 109.47174 * 179.97438 * 8 7 6 10 10 S 1.65599 * 120.00012 * 165.27283 * 9 8 7 11 11 O 1.42099 * 106.40254 * 178.26555 * 10 9 8 12 12 O 1.42099 * 106.40561 * 311.18985 * 10 9 8 13 13 C 1.76199 * 107.21742 * 64.72792 * 10 9 8 14 14 C 1.38663 * 119.87803 * 269.72779 * 13 10 9 15 15 C 1.38608 * 120.49900 * 179.72590 * 14 13 10 16 16 C 1.37643 * 120.25314 * 0.54496 * 15 14 13 17 17 C 1.40701 * 119.74074 * 359.72925 * 16 15 14 18 18 C 1.41392 * 120.24352 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00124 * 150.22284 * 18 17 16 20 20 C 1.39956 * 119.99767 * 330.22192 * 18 17 16 21 21 N 1.30820 * 119.99575 * 161.72579 * 20 18 17 22 22 Si 1.86798 * 120.00009 * 341.72427 * 20 18 17 23 23 H 1.48503 * 109.46818 * 95.41225 * 22 20 18 24 24 H 1.48497 * 109.46908 * 215.41096 * 22 20 18 25 25 H 1.48501 * 109.47252 * 335.41469 * 22 20 18 26 26 C 1.37597 * 119.87535 * 90.00185 * 13 10 9 27 27 H 1.08998 * 109.46795 * 299.99995 * 1 2 3 28 28 H 1.08998 * 109.47122 * 59.99901 * 1 2 3 29 29 H 1.09005 * 109.46734 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46743 * 240.00104 * 2 1 3 31 31 H 1.08998 * 109.47122 * 120.00099 * 2 1 3 32 32 H 0.96693 * 113.99748 * 299.99924 * 5 3 2 33 33 H 1.09000 * 109.47036 * 65.00032 * 6 3 2 34 34 H 1.09004 * 109.46750 * 305.00080 * 6 3 2 35 35 H 1.09000 * 109.47069 * 60.00043 * 7 6 3 36 36 H 1.09001 * 109.46833 * 299.99982 * 7 6 3 37 37 H 1.09002 * 109.47474 * 59.99756 * 8 7 6 38 38 H 1.09001 * 109.47367 * 299.99727 * 8 7 6 39 39 H 0.97000 * 119.99787 * 345.00282 * 9 8 7 40 40 H 1.07996 * 119.73979 * 359.97438 * 14 13 10 41 41 H 1.08000 * 119.87490 * 180.25925 * 15 14 13 42 42 H 1.07995 * 120.12566 * 179.75233 * 16 15 14 43 43 H 0.96995 * 119.99795 * 179.97438 * 21 20 18 44 44 H 1.07998 * 120.12646 * 359.97175 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 8 1.6619 2.0813 -1.2211 6 6 3.5649 1.4443 0.1257 7 6 4.0645 2.8850 0.2511 8 6 5.5892 2.8868 0.3773 9 7 6.0678 4.2663 0.4968 10 16 7.6141 4.5649 1.0085 11 8 7.7813 5.9757 0.9786 12 8 7.8071 3.7840 2.1799 13 6 8.7030 3.9089 -0.2116 14 6 9.1468 2.5993 -0.1090 15 6 9.9990 2.0684 -1.0645 16 6 10.4234 2.8413 -2.1214 17 6 9.9841 4.1733 -2.2327 18 6 10.4129 4.9767 -3.3143 19 1 9.7744 5.7629 -3.6894 20 6 11.6647 4.7530 -3.8989 21 7 11.9233 5.2248 -5.0913 22 14 12.9659 3.7808 -2.9764 23 1 12.9171 2.3593 -3.4034 24 1 14.3078 4.3418 -3.2760 25 1 12.7073 3.8683 -1.5168 26 6 9.1144 4.7000 -1.2596 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5138 0.8900 32 1 2.0141 1.6542 -2.0139 33 1 4.0029 0.9836 -0.7597 34 1 3.8571 0.8800 1.0113 35 1 3.6264 3.3457 1.1364 36 1 3.7722 3.4493 -0.6345 37 1 6.0277 2.4259 -0.5078 38 1 5.8811 2.3226 1.2631 39 1 5.4800 5.0046 0.2724 40 1 8.8226 1.9871 0.7196 41 1 10.3351 1.0457 -0.9769 42 1 11.0906 2.4268 -2.8626 43 1 12.7910 5.0701 -5.4963 44 1 8.7707 5.7210 -1.3354 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619486679.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:51 Heat of formation + Delta-G solvation = -159.743237 kcal Electronic energy + Delta-G solvation = -25362.927408 eV Core-core repulsion = 21597.776896 eV Total energy + Delta-G solvation = -3765.150512 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.69291 -39.20038 -38.30614 -36.95766 -36.87177 -35.64671 -33.80001 -32.83025 -32.54695 -31.89317 -28.27099 -27.25340 -24.65829 -24.10927 -22.70698 -22.26111 -22.17278 -20.65141 -19.67806 -18.42592 -18.06757 -17.50568 -17.20969 -16.97099 -16.80343 -16.62215 -16.05717 -15.88771 -15.50143 -15.13721 -14.82713 -14.68860 -14.36841 -14.09681 -13.94825 -13.59178 -13.41717 -13.34877 -13.22160 -13.13993 -13.07334 -12.94248 -12.88494 -12.55386 -12.41754 -12.25450 -12.04804 -11.81001 -11.78826 -11.68427 -11.53704 -11.50339 -11.08162 -10.68004 -10.39572 -10.00786 -9.69701 -8.97950 -6.60627 -0.53877 0.17404 0.64113 1.19792 1.35234 1.42263 2.02582 2.09835 2.41202 2.75099 3.28956 3.39970 3.55664 3.80812 3.98186 4.10203 4.17154 4.26191 4.28292 4.33014 4.41599 4.43850 4.54876 4.64612 4.74992 4.75492 4.82326 4.87994 4.92939 5.05270 5.06096 5.09243 5.15946 5.23805 5.33326 5.42824 5.43087 5.45052 5.48129 5.62033 5.75320 5.98359 6.10815 6.23295 6.57204 6.68393 6.93930 8.10327 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015017 B = 0.002884 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.052689 B = 9706.004735 C =10504.443355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.154 4.154 3 C 0.107 3.893 4 H 0.093 0.907 5 O -0.579 6.579 6 C -0.148 4.148 7 C -0.116 4.116 8 C 0.108 3.892 9 N -1.106 6.106 10 S 2.718 3.282 11 O -0.997 6.997 12 O -0.981 6.981 13 C -0.633 4.633 14 C -0.141 4.141 15 C -0.095 4.095 16 C -0.205 4.205 17 C 0.053 3.947 18 C -0.484 4.484 19 H 0.061 0.939 20 C 0.048 3.952 21 N -0.841 5.841 22 Si 0.957 3.043 23 H -0.247 1.247 24 H -0.274 1.274 25 H -0.256 1.256 26 C -0.123 4.123 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.385 0.615 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.426 0.574 40 H 0.145 0.855 41 H 0.145 0.855 42 H 0.109 0.891 43 H 0.296 0.704 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.365 -12.295 8.983 22.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.192 4.192 3 C 0.048 3.952 4 H 0.110 0.890 5 O -0.387 6.387 6 C -0.187 4.187 7 C -0.155 4.155 8 C -0.017 4.017 9 N -0.869 5.869 10 S 2.810 3.190 11 O -0.987 6.987 12 O -0.971 6.971 13 C -0.721 4.721 14 C -0.162 4.162 15 C -0.114 4.114 16 C -0.224 4.224 17 C 0.050 3.950 18 C -0.513 4.513 19 H 0.079 0.921 20 C -0.167 4.167 21 N -0.467 5.467 22 Si 0.779 3.221 23 H -0.171 1.171 24 H -0.201 1.201 25 H -0.180 1.180 26 C -0.144 4.144 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.234 0.766 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.262 0.738 40 H 0.163 0.837 41 H 0.163 0.837 42 H 0.127 0.873 43 H 0.107 0.893 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -16.175 -11.536 9.960 22.224 hybrid contribution 1.031 -0.117 -1.465 1.795 sum -15.144 -11.653 8.495 20.912 Atomic orbital electron populations 1.21710 0.95605 1.01627 1.01816 1.22226 0.96681 0.96774 1.03495 1.21986 0.92974 0.92970 0.87275 0.88953 1.86552 1.77394 1.58123 1.16612 1.22265 0.96096 0.96183 1.04148 1.21664 0.92166 0.98341 1.03361 1.21577 0.97002 0.80531 1.02630 1.55227 1.29870 1.15325 1.86475 1.00848 0.72800 0.71985 0.73357 1.93518 1.86090 1.31578 1.87562 1.93503 1.85912 1.72151 1.45542 1.30456 1.19518 1.05410 1.16749 1.20632 1.01610 0.93391 1.00534 1.21178 0.96766 0.99925 0.93493 1.21508 1.05508 0.94168 1.01237 1.17958 0.92801 0.92543 0.91727 1.19486 1.02920 1.16310 1.12592 0.92102 1.26811 1.01081 0.94651 0.94189 1.69700 1.25035 1.38378 1.13538 0.85618 0.76616 0.79264 0.80580 1.17119 1.20057 1.18035 1.20886 1.01903 0.98039 0.93594 0.92977 0.93036 0.92304 0.91042 0.90219 0.76612 0.90509 0.89527 0.90793 0.90927 0.91356 0.89798 0.73778 0.83727 0.83726 0.87316 0.89309 0.86948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.81 71.98 0.71 -0.96 16 2 C -0.15 -1.52 5.61 30.59 0.17 -1.35 16 3 C 0.11 1.29 2.97 30.59 0.09 1.38 16 4 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 5 O -0.58 -8.69 12.41 -148.98 -1.85 -10.54 16 6 C -0.15 -1.74 4.89 30.59 0.15 -1.59 16 7 C -0.12 -1.78 5.25 30.59 0.16 -1.62 16 8 C 0.11 2.14 6.22 86.38 0.54 2.68 16 9 N -1.11 -26.90 6.00 -187.49 -1.12 -28.02 16 10 S 2.72 90.99 5.73 -56.49 -0.32 90.66 16 11 O -1.00 -39.73 17.26 -128.00 -2.21 -41.94 16 12 O -0.98 -34.88 16.74 -128.00 -2.14 -37.02 16 13 C -0.63 -24.80 5.93 22.22 0.13 -24.67 16 14 C -0.14 -5.10 9.53 22.46 0.21 -4.89 16 15 C -0.09 -3.54 10.02 22.22 0.22 -3.32 16 16 C -0.20 -9.12 7.18 22.73 0.16 -8.96 16 17 C 0.05 2.66 5.11 -21.29 -0.11 2.55 16 18 C -0.48 -26.70 9.57 23.46 0.22 -26.48 16 19 H 0.06 3.61 8.06 -2.91 -0.02 3.59 16 20 C 0.05 2.53 5.40 85.26 0.46 2.99 16 21 N -0.84 -45.03 13.93 21.83 0.30 -44.72 16 22 Si 0.96 41.14 24.52 68.60 1.68 42.82 16 23 H -0.25 -9.64 6.71 99.48 0.67 -8.97 16 24 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 25 H -0.26 -11.44 6.86 99.48 0.68 -10.76 16 26 C -0.12 -5.70 9.26 22.73 0.21 -5.49 16 27 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.05 0.66 7.82 -2.39 -0.02 0.64 16 29 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.07 0.63 8.14 -2.38 -0.02 0.62 16 31 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.38 3.58 9.04 -74.06 -0.67 2.91 16 33 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.07 1.20 7.82 -2.39 -0.02 1.19 16 37 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.08 1.58 7.76 -2.39 -0.02 1.56 16 39 H 0.43 8.74 8.65 -96.75 -0.84 7.90 16 40 H 0.15 4.31 7.59 -2.91 -0.02 4.28 16 41 H 0.15 4.20 8.06 -2.91 -0.02 4.17 16 42 H 0.11 4.73 4.73 -2.91 -0.01 4.71 16 43 H 0.30 14.16 8.30 -92.71 -0.77 13.39 16 44 H 0.11 5.19 7.60 -2.91 -0.02 5.17 16 Total: -1.00 -68.61 372.76 -2.88 -71.49 By element: Atomic # 1 Polarization: 27.54 SS G_CDS: -0.56 Total: 26.99 kcal Atomic # 6 Polarization: -73.05 SS G_CDS: 3.33 Total: -69.72 kcal Atomic # 7 Polarization: -71.92 SS G_CDS: -0.82 Total: -72.74 kcal Atomic # 8 Polarization: -83.30 SS G_CDS: -6.20 Total: -89.50 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 1.68 Total: 42.82 kcal Atomic # 16 Polarization: 90.99 SS G_CDS: -0.32 Total: 90.66 kcal Total: -68.61 -2.88 -71.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619486679.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.251 kcal (2) G-P(sol) polarization free energy of solvation -68.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds