Wall clock time and date at job start Tue Mar 31 2020 15:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47466 * 2 1 4 4 C 1.53001 * 109.47126 * 120.00102 * 2 1 3 5 5 H 1.09002 * 109.47157 * 59.99472 * 4 2 1 6 6 C 1.52997 * 109.46950 * 300.00214 * 4 2 1 7 7 C 1.53001 * 109.47245 * 174.99945 * 6 4 2 8 8 O 1.42903 * 109.47306 * 179.97438 * 7 6 4 9 9 N 1.46496 * 109.47200 * 179.97438 * 4 2 1 10 10 S 1.65598 * 120.00584 * 264.99913 * 9 4 2 11 11 O 1.42097 * 106.39929 * 311.46400 * 10 9 4 12 12 O 1.42094 * 106.40600 * 178.53871 * 10 9 4 13 13 C 1.76201 * 107.21589 * 65.00068 * 10 9 4 14 14 C 1.38660 * 119.87700 * 269.98079 * 13 10 9 15 15 C 1.38608 * 120.50513 * 180.02562 * 14 13 10 16 16 C 1.37644 * 120.24552 * 359.97438 * 15 14 13 17 17 C 1.40690 * 119.74496 * 0.02562 * 16 15 14 18 18 C 1.41400 * 120.24647 * 180.02562 * 17 16 15 19 19 H 1.07997 * 119.99989 * 155.24781 * 18 17 16 20 20 C 1.39947 * 119.99773 * 335.25483 * 18 17 16 21 21 N 1.30819 * 119.99909 * 342.23770 * 20 18 17 22 22 Si 1.86796 * 119.99953 * 162.24445 * 20 18 17 23 23 H 1.48507 * 109.47312 * 89.99517 * 22 20 18 24 24 H 1.48499 * 109.47147 * 209.99961 * 22 20 18 25 25 H 1.48507 * 109.47287 * 329.99532 * 22 20 18 26 26 C 1.37595 * 119.87668 * 90.00221 * 13 10 9 27 27 H 1.08999 * 109.47108 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47103 * 299.99902 * 1 2 3 29 29 H 1.09006 * 109.46660 * 60.00025 * 1 2 3 30 30 H 1.09004 * 109.47362 * 239.99867 * 2 1 3 31 31 H 1.08996 * 109.47366 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.46872 * 300.00393 * 3 2 1 33 33 H 1.09004 * 109.46939 * 59.99608 * 3 2 1 34 34 H 1.09008 * 109.47164 * 294.99565 * 6 4 2 35 35 H 1.09004 * 109.47611 * 54.99715 * 6 4 2 36 36 H 1.08997 * 109.47130 * 300.00010 * 7 6 4 37 37 H 1.09004 * 109.47004 * 59.99398 * 7 6 4 38 38 H 0.96698 * 113.99815 * 179.97438 * 8 7 6 39 39 H 0.97008 * 119.99536 * 85.00178 * 9 4 2 40 40 H 1.08002 * 119.74767 * 359.97438 * 14 13 10 41 41 H 1.07999 * 119.87876 * 179.97438 * 15 14 13 42 42 H 1.08001 * 120.12501 * 180.02562 * 16 15 14 43 43 H 0.97004 * 119.99812 * 180.02562 * 21 20 18 44 44 H 1.08002 * 120.12602 * 0.25230 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6766 -1.7489 1.2493 6 6 1.5299 -0.0001 2.4984 7 6 1.9347 -0.7902 3.7445 8 8 1.4588 -0.1163 4.9114 9 7 3.5050 -0.7218 1.2489 10 16 4.3325 -2.0219 0.6429 11 8 3.7512 -3.1773 1.2314 12 8 5.7133 -1.7051 0.7522 13 6 3.9770 -2.1090 -1.0806 14 6 2.8940 -2.8517 -1.5258 15 6 2.6027 -2.9297 -2.8787 16 6 3.3874 -2.2684 -3.7961 17 6 4.4888 -1.5118 -3.3559 18 6 5.3017 -0.8278 -4.2890 19 1 5.8676 0.0384 -3.9794 20 6 5.3727 -1.2731 -5.6139 21 7 4.9879 -2.4859 -5.9177 22 14 6.0171 -0.1358 -6.9482 23 1 7.4873 -0.3037 -7.0743 24 1 5.3678 -0.4714 -8.2408 25 1 5.7087 1.2721 -6.5902 26 6 4.7753 -1.4402 -1.9798 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 1.8934 -0.5139 -0.8900 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.9646 0.9985 2.5444 35 1 0.4436 0.0782 2.4548 36 1 1.5001 -1.7888 3.6986 37 1 3.0210 -0.8685 3.7882 38 1 1.6793 -0.5622 5.7405 39 1 3.9903 0.0395 1.6038 40 1 2.2731 -3.3742 -0.8131 41 1 1.7569 -3.5114 -3.2143 42 1 3.1584 -2.3301 -4.8497 43 1 5.0374 -2.7947 -6.8360 44 1 5.6209 -0.8658 -1.6313 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619487163.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:24 Heat of formation + Delta-G solvation = -128.720432 kcal Electronic energy + Delta-G solvation = -26957.142566 eV Core-core repulsion = 23193.337304 eV Total energy + Delta-G solvation = -3763.805262 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -38.65060 -37.65702 -36.69051 -36.48610 -35.32783 -33.86633 -32.83691 -30.56357 -30.09639 -29.79849 -27.03958 -25.52677 -25.17424 -22.42931 -21.88302 -21.00037 -19.51271 -19.12243 -18.02873 -17.53705 -16.96931 -16.06923 -15.93602 -15.31800 -15.23959 -14.91543 -14.82612 -14.36454 -14.15072 -13.50287 -13.38953 -13.35978 -12.95569 -12.79503 -12.60315 -11.97084 -11.94614 -11.66281 -11.59967 -11.53948 -11.43166 -11.39436 -11.37549 -11.25209 -11.12636 -11.06882 -10.89328 -10.83570 -10.62506 -10.27717 -10.04241 -9.80421 -9.67709 -9.35380 -9.13368 -8.04708 -7.71210 -6.94033 -4.54949 1.00319 2.17869 2.61931 2.98779 3.00335 3.06787 3.52617 3.81592 4.00757 4.22619 4.42659 4.77420 4.87490 4.92897 5.03965 5.17264 5.23667 5.35844 5.38058 5.44537 5.56413 5.65428 5.76266 5.80939 5.98139 6.01349 6.03223 6.05617 6.14199 6.19244 6.28962 6.49579 6.53985 6.64136 6.74470 6.82822 7.01416 7.17430 7.22138 7.36482 7.46924 7.70650 7.78754 7.92580 8.38332 8.65432 8.70060 10.01589 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.018029 B = 0.003807 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.680470 B = 7353.321262 C = 7769.038079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.121 4.121 3 C -0.145 4.145 4 C 0.162 3.838 5 H 0.093 0.907 6 C -0.124 4.124 7 C 0.071 3.929 8 O -0.578 6.578 9 N -1.117 6.117 10 S 2.685 3.315 11 O -0.976 6.976 12 O -0.973 6.973 13 C -0.628 4.628 14 C -0.147 4.147 15 C -0.119 4.119 16 C -0.118 4.118 17 C 0.093 3.907 18 C -0.461 4.461 19 H 0.082 0.918 20 C 0.075 3.925 21 N -0.793 5.793 22 Si 0.910 3.090 23 H -0.268 1.268 24 H -0.275 1.275 25 H -0.259 1.259 26 C -0.123 4.123 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.095 0.905 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.049 0.951 37 H 0.048 0.952 38 H 0.378 0.622 39 H 0.413 0.587 40 H 0.104 0.896 41 H 0.097 0.903 42 H 0.123 0.877 43 H 0.283 0.717 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.700 4.908 10.785 14.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.141 4.141 3 C -0.202 4.202 4 C 0.055 3.945 5 H 0.111 0.889 6 C -0.163 4.163 7 C -0.006 4.006 8 O -0.384 6.384 9 N -0.874 5.874 10 S 2.781 3.219 11 O -0.966 6.966 12 O -0.964 6.964 13 C -0.720 4.720 14 C -0.169 4.169 15 C -0.139 4.139 16 C -0.138 4.138 17 C 0.090 3.910 18 C -0.490 4.490 19 H 0.100 0.900 20 C -0.143 4.143 21 N -0.418 5.418 22 Si 0.734 3.266 23 H -0.193 1.193 24 H -0.200 1.200 25 H -0.183 1.183 26 C -0.144 4.144 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.113 0.887 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.225 0.775 39 H 0.247 0.753 40 H 0.122 0.878 41 H 0.115 0.885 42 H 0.141 0.859 43 H 0.094 0.906 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.480 4.432 10.589 13.701 hybrid contribution 0.503 0.423 -0.971 1.173 sum -6.977 4.855 9.618 12.835 Atomic orbital electron populations 1.21875 0.94877 1.01941 1.01802 1.21700 0.95947 0.97495 0.98924 1.21813 1.01567 0.95496 1.01347 1.20740 0.78835 1.00613 0.94349 0.88877 1.21868 1.02550 1.00065 0.91803 1.22253 0.98081 0.95119 0.85186 1.86435 1.81445 1.53934 1.16557 1.55719 1.15009 1.37933 1.78694 1.01747 0.72581 0.72614 0.74937 1.93508 1.78875 1.47322 1.76902 1.93541 1.31261 1.84104 1.87447 1.29683 1.07927 1.12851 1.21585 1.20038 0.98150 1.02760 0.95906 1.20790 0.99443 1.00417 0.93246 1.21619 0.93999 0.98882 0.99251 1.17657 0.91232 0.91030 0.91107 1.19597 1.24018 1.12106 0.93255 0.90000 1.25929 0.93594 0.94777 1.00001 1.69780 1.35685 1.15155 1.21193 0.86269 0.79584 0.81372 0.79333 1.19320 1.20008 1.18325 1.20726 0.98323 1.01664 0.93692 0.92489 0.92520 0.92392 0.88678 0.92262 0.92719 0.92870 0.90280 0.89580 0.93239 0.93342 0.77543 0.75286 0.87752 0.88482 0.85875 0.90551 0.87169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 8.85 37.16 0.33 -1.23 16 2 C -0.12 -1.51 2.94 -90.62 -0.27 -1.77 16 3 C -0.14 -1.69 8.68 37.16 0.32 -1.37 16 4 C 0.16 1.98 2.13 -67.93 -0.14 1.83 16 5 H 0.09 1.18 7.50 -51.93 -0.39 0.79 16 6 C -0.12 -1.29 4.46 -26.73 -0.12 -1.41 16 7 C 0.07 0.75 6.93 37.16 0.26 1.01 16 8 O -0.58 -5.92 13.66 -35.23 -0.48 -6.40 16 9 N -1.12 -15.04 4.23 -4.89 -0.02 -15.06 16 10 S 2.69 48.66 5.71 -107.50 -0.61 48.04 16 11 O -0.98 -19.19 16.60 -57.17 -0.95 -20.14 16 12 O -0.97 -20.22 17.26 -57.17 -0.99 -21.21 16 13 C -0.63 -13.11 5.05 -39.66 -0.20 -13.31 16 14 C -0.15 -3.03 8.59 -39.29 -0.34 -3.37 16 15 C -0.12 -2.57 10.02 -39.66 -0.40 -2.97 16 16 C -0.12 -2.84 8.70 -38.87 -0.34 -3.17 16 17 C 0.09 2.34 5.57 -106.82 -0.60 1.74 16 18 C -0.46 -11.60 9.05 -37.74 -0.34 -11.94 16 19 H 0.08 1.98 7.91 -52.49 -0.41 1.56 16 20 C 0.08 1.80 5.14 -17.34 -0.09 1.71 16 21 N -0.79 -19.56 10.97 55.55 0.61 -18.95 16 22 Si 0.91 17.86 29.59 -169.99 -5.03 12.82 16 23 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 24 H -0.28 -5.27 7.11 56.52 0.40 -4.86 16 25 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 26 C -0.12 -2.85 9.26 -38.87 -0.36 -3.21 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.52 6.32 -51.93 -0.33 0.19 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 1.45 6.17 -51.93 -0.32 1.13 16 31 H 0.06 0.72 7.45 -51.93 -0.39 0.33 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.53 6.54 -51.93 -0.34 0.19 16 34 H 0.08 0.80 6.71 -51.92 -0.35 0.45 16 35 H 0.09 0.84 6.17 -51.93 -0.32 0.52 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.05 0.51 7.75 -51.93 -0.40 0.11 16 38 H 0.38 2.23 9.12 45.56 0.42 2.65 16 39 H 0.41 4.69 8.62 -34.47 -0.30 4.39 16 40 H 0.10 1.94 7.60 -52.49 -0.40 1.54 16 41 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 42 H 0.12 3.05 6.18 -52.49 -0.32 2.72 16 43 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 44 H 0.11 2.49 7.60 -52.49 -0.40 2.09 16 LS Contribution 365.31 15.07 5.51 5.51 Total: -1.00 -30.68 365.31 -9.75 -40.44 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -5.50 Total: 12.43 kcal Atomic # 6 Polarization: -35.19 SS G_CDS: -2.28 Total: -37.47 kcal Atomic # 7 Polarization: -34.60 SS G_CDS: 0.59 Total: -34.02 kcal Atomic # 8 Polarization: -45.33 SS G_CDS: -2.42 Total: -47.75 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.82 kcal Atomic # 16 Polarization: 48.66 SS G_CDS: -0.61 Total: 48.04 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.68 -9.75 -40.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619487163.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.284 kcal (2) G-P(sol) polarization free energy of solvation -30.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds