Wall clock time and date at job start Tue Mar 31 2020 15:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47466 * 2 1 4 4 C 1.53001 * 109.47126 * 120.00102 * 2 1 3 5 5 H 1.09002 * 109.47157 * 59.99472 * 4 2 1 6 6 C 1.52997 * 109.46950 * 300.00214 * 4 2 1 7 7 C 1.53001 * 109.47245 * 174.99945 * 6 4 2 8 8 O 1.42903 * 109.47306 * 179.97438 * 7 6 4 9 9 N 1.46496 * 109.47200 * 179.97438 * 4 2 1 10 10 S 1.65598 * 120.00584 * 264.99913 * 9 4 2 11 11 O 1.42097 * 106.39929 * 311.46400 * 10 9 4 12 12 O 1.42094 * 106.40600 * 178.53871 * 10 9 4 13 13 C 1.76201 * 107.21589 * 65.00068 * 10 9 4 14 14 C 1.38660 * 119.87700 * 269.98079 * 13 10 9 15 15 C 1.38608 * 120.50513 * 180.02562 * 14 13 10 16 16 C 1.37644 * 120.24552 * 359.97438 * 15 14 13 17 17 C 1.40690 * 119.74496 * 0.02562 * 16 15 14 18 18 C 1.41400 * 120.24647 * 180.02562 * 17 16 15 19 19 H 1.07997 * 119.99989 * 155.24781 * 18 17 16 20 20 C 1.39947 * 119.99773 * 335.25483 * 18 17 16 21 21 N 1.30819 * 119.99909 * 342.23770 * 20 18 17 22 22 Si 1.86796 * 119.99953 * 162.24445 * 20 18 17 23 23 H 1.48507 * 109.47312 * 89.99517 * 22 20 18 24 24 H 1.48499 * 109.47147 * 209.99961 * 22 20 18 25 25 H 1.48507 * 109.47287 * 329.99532 * 22 20 18 26 26 C 1.37595 * 119.87668 * 90.00221 * 13 10 9 27 27 H 1.08999 * 109.47108 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47103 * 299.99902 * 1 2 3 29 29 H 1.09006 * 109.46660 * 60.00025 * 1 2 3 30 30 H 1.09004 * 109.47362 * 239.99867 * 2 1 3 31 31 H 1.08996 * 109.47366 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.46872 * 300.00393 * 3 2 1 33 33 H 1.09004 * 109.46939 * 59.99608 * 3 2 1 34 34 H 1.09008 * 109.47164 * 294.99565 * 6 4 2 35 35 H 1.09004 * 109.47611 * 54.99715 * 6 4 2 36 36 H 1.08997 * 109.47130 * 300.00010 * 7 6 4 37 37 H 1.09004 * 109.47004 * 59.99398 * 7 6 4 38 38 H 0.96698 * 113.99815 * 179.97438 * 8 7 6 39 39 H 0.97008 * 119.99536 * 85.00178 * 9 4 2 40 40 H 1.08002 * 119.74767 * 359.97438 * 14 13 10 41 41 H 1.07999 * 119.87876 * 179.97438 * 15 14 13 42 42 H 1.08001 * 120.12501 * 180.02562 * 16 15 14 43 43 H 0.97004 * 119.99812 * 180.02562 * 21 20 18 44 44 H 1.08002 * 120.12602 * 0.25230 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6766 -1.7489 1.2493 6 6 1.5299 -0.0001 2.4984 7 6 1.9347 -0.7902 3.7445 8 8 1.4588 -0.1163 4.9114 9 7 3.5050 -0.7218 1.2489 10 16 4.3325 -2.0219 0.6429 11 8 3.7512 -3.1773 1.2314 12 8 5.7133 -1.7051 0.7522 13 6 3.9770 -2.1090 -1.0806 14 6 2.8940 -2.8517 -1.5258 15 6 2.6027 -2.9297 -2.8787 16 6 3.3874 -2.2684 -3.7961 17 6 4.4888 -1.5118 -3.3559 18 6 5.3017 -0.8278 -4.2890 19 1 5.8676 0.0384 -3.9794 20 6 5.3727 -1.2731 -5.6139 21 7 4.9879 -2.4859 -5.9177 22 14 6.0171 -0.1358 -6.9482 23 1 7.4873 -0.3037 -7.0743 24 1 5.3678 -0.4714 -8.2408 25 1 5.7087 1.2721 -6.5902 26 6 4.7753 -1.4402 -1.9798 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 1.8934 -0.5139 -0.8900 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.9646 0.9985 2.5444 35 1 0.4436 0.0782 2.4548 36 1 1.5001 -1.7888 3.6986 37 1 3.0210 -0.8685 3.7882 38 1 1.6793 -0.5622 5.7405 39 1 3.9903 0.0395 1.6038 40 1 2.2731 -3.3742 -0.8131 41 1 1.7569 -3.5114 -3.2143 42 1 3.1584 -2.3301 -4.8497 43 1 5.0374 -2.7947 -6.8360 44 1 5.6209 -0.8658 -1.6313 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619487163.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:24 Heat of formation + Delta-G solvation = -150.985023 kcal Electronic energy + Delta-G solvation = -26958.108032 eV Core-core repulsion = 23193.337304 eV Total energy + Delta-G solvation = -3764.770727 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.69185 -39.34926 -38.22240 -37.32692 -36.91331 -35.65637 -33.90554 -31.89846 -31.63605 -31.38237 -27.93634 -27.33507 -26.13985 -23.67350 -23.24847 -22.75650 -20.74594 -20.35497 -19.66083 -18.61960 -18.17971 -17.68811 -17.18843 -16.82848 -16.53386 -16.22300 -16.18279 -15.56995 -15.24872 -15.08719 -15.03316 -14.30926 -14.28900 -14.00311 -13.69750 -13.61812 -13.27315 -13.21076 -13.06271 -13.05254 -12.87502 -12.83119 -12.69139 -12.57864 -12.42220 -12.20842 -12.14881 -12.02051 -11.77290 -11.54789 -11.35308 -11.25183 -11.10168 -10.80572 -10.34405 -9.80126 -9.52251 -8.72429 -6.43606 -0.48564 0.43592 0.86940 1.36862 1.44190 1.51669 2.12285 2.18199 2.56052 2.79851 3.25264 3.46459 3.54339 3.86752 3.99510 4.11514 4.27436 4.30293 4.35761 4.45109 4.46392 4.54877 4.71871 4.76330 4.84557 4.86793 4.92544 4.93134 5.07846 5.11287 5.12487 5.20835 5.21744 5.26387 5.38968 5.43117 5.56060 5.58423 5.59184 5.91267 5.95563 6.11856 6.14512 6.54460 6.81555 6.86746 6.91315 8.25675 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.018029 B = 0.003807 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.680470 B = 7353.321262 C = 7769.038079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.122 4.122 3 C -0.145 4.145 4 C 0.160 3.840 5 H 0.092 0.908 6 C -0.118 4.118 7 C 0.068 3.932 8 O -0.590 6.590 9 N -1.099 6.099 10 S 2.714 3.286 11 O -0.985 6.985 12 O -0.999 6.999 13 C -0.633 4.633 14 C -0.140 4.140 15 C -0.121 4.121 16 C -0.138 4.138 17 C 0.066 3.934 18 C -0.499 4.499 19 H 0.078 0.922 20 C 0.037 3.963 21 N -0.825 5.825 22 Si 0.981 3.019 23 H -0.265 1.265 24 H -0.264 1.264 25 H -0.257 1.257 26 C -0.141 4.141 27 H 0.059 0.941 28 H 0.076 0.924 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.051 0.949 37 H 0.046 0.954 38 H 0.396 0.604 39 H 0.426 0.574 40 H 0.130 0.870 41 H 0.124 0.876 42 H 0.110 0.890 43 H 0.291 0.709 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.966 5.552 12.107 16.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.142 4.142 3 C -0.203 4.203 4 C 0.053 3.947 5 H 0.110 0.890 6 C -0.157 4.157 7 C -0.009 4.009 8 O -0.398 6.398 9 N -0.860 5.860 10 S 2.807 3.193 11 O -0.975 6.975 12 O -0.990 6.990 13 C -0.722 4.722 14 C -0.160 4.160 15 C -0.140 4.140 16 C -0.158 4.158 17 C 0.063 3.937 18 C -0.528 4.528 19 H 0.096 0.904 20 C -0.178 4.178 21 N -0.451 5.451 22 Si 0.802 3.198 23 H -0.189 1.189 24 H -0.189 1.189 25 H -0.181 1.181 26 C -0.162 4.162 27 H 0.078 0.922 28 H 0.095 0.905 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.118 0.882 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.245 0.755 39 H 0.263 0.737 40 H 0.148 0.852 41 H 0.142 0.858 42 H 0.128 0.872 43 H 0.102 0.898 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.748 5.064 11.904 15.617 hybrid contribution 0.805 0.188 -1.197 1.455 sum -7.944 5.252 10.707 14.329 Atomic orbital electron populations 1.21869 0.93212 1.02461 1.02719 1.21658 0.97389 0.97527 0.97599 1.21825 1.00963 0.95251 1.02221 1.20913 0.77420 1.00969 0.95409 0.89001 1.21815 1.03255 0.99990 0.90604 1.22238 0.97985 0.95213 0.85489 1.86384 1.81542 1.54500 1.17396 1.55338 1.15798 1.37356 1.77530 1.00887 0.71897 0.73035 0.73490 1.93494 1.79011 1.48666 1.76345 1.93502 1.33426 1.84701 1.87335 1.30151 1.07095 1.11479 1.23443 1.20385 0.97864 1.01746 0.96040 1.21099 0.99678 0.99809 0.93395 1.21604 0.94800 1.00236 0.99181 1.17982 0.91877 0.91783 0.92106 1.19847 1.25410 1.12863 0.94725 0.90350 1.26733 0.93496 0.95990 1.01615 1.69822 1.36659 1.16512 1.22086 0.85211 0.78945 0.79136 0.76522 1.18932 1.18876 1.18095 1.20765 0.99064 1.02752 0.93644 0.92205 0.90521 0.92593 0.91854 0.93254 0.93242 0.90623 0.89581 0.88240 0.93097 0.93595 0.75461 0.73715 0.85200 0.85769 0.87197 0.89836 0.87588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 8.85 71.98 0.64 -2.11 16 2 C -0.12 -2.85 2.94 -10.79 -0.03 -2.88 16 3 C -0.15 -3.19 8.68 71.98 0.63 -2.56 16 4 C 0.16 3.55 2.13 44.99 0.10 3.64 16 5 H 0.09 2.11 7.50 -2.39 -0.02 2.09 16 6 C -0.12 -2.10 4.46 30.59 0.14 -1.96 16 7 C 0.07 1.26 6.93 71.98 0.50 1.76 16 8 O -0.59 -10.36 13.66 -148.98 -2.04 -12.40 16 9 N -1.10 -27.93 4.23 -169.40 -0.72 -28.65 16 10 S 2.71 96.01 5.71 -56.49 -0.32 95.68 16 11 O -0.99 -37.05 16.60 -128.00 -2.13 -39.18 16 12 O -1.00 -41.25 17.26 -128.00 -2.21 -43.46 16 13 C -0.63 -26.43 5.05 22.22 0.11 -26.32 16 14 C -0.14 -5.63 8.59 22.46 0.19 -5.44 16 15 C -0.12 -5.18 10.02 22.22 0.22 -4.95 16 16 C -0.14 -6.88 8.70 22.73 0.20 -6.68 16 17 C 0.07 3.43 5.57 -21.29 -0.12 3.31 16 18 C -0.50 -26.24 9.05 23.46 0.21 -26.03 16 19 H 0.08 3.98 7.91 -2.91 -0.02 3.96 16 20 C 0.04 1.81 5.14 85.26 0.44 2.25 16 21 N -0.82 -41.83 10.97 21.83 0.24 -41.59 16 22 Si 0.98 37.16 29.59 68.60 2.03 39.19 16 23 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 24 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 25 H -0.26 -9.53 7.11 99.48 0.71 -8.83 16 26 C -0.14 -6.78 9.26 22.73 0.21 -6.56 16 27 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.08 1.15 6.32 -2.39 -0.02 1.13 16 29 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 30 H 0.06 1.91 6.17 -2.39 -0.01 1.90 16 31 H 0.05 1.16 7.45 -2.39 -0.02 1.14 16 32 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.07 1.30 6.54 -2.39 -0.02 1.29 16 34 H 0.09 1.44 6.71 -2.38 -0.02 1.42 16 35 H 0.10 1.56 6.17 -2.39 -0.01 1.55 16 36 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.05 0.86 7.75 -2.39 -0.02 0.84 16 38 H 0.40 3.61 9.12 -74.06 -0.68 2.94 16 39 H 0.43 8.94 8.62 -96.74 -0.83 8.11 16 40 H 0.13 4.55 7.60 -2.91 -0.02 4.53 16 41 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 42 H 0.11 5.67 6.18 -2.91 -0.02 5.65 16 43 H 0.29 13.29 8.30 -92.71 -0.77 12.52 16 44 H 0.11 5.02 7.60 -2.91 -0.02 5.00 16 Total: -1.00 -66.71 365.31 -2.18 -68.89 By element: Atomic # 1 Polarization: 36.54 SS G_CDS: -0.47 Total: 36.06 kcal Atomic # 6 Polarization: -77.98 SS G_CDS: 3.43 Total: -74.55 kcal Atomic # 7 Polarization: -69.77 SS G_CDS: -0.48 Total: -70.24 kcal Atomic # 8 Polarization: -88.67 SS G_CDS: -6.37 Total: -95.04 kcal Atomic # 14 Polarization: 37.16 SS G_CDS: 2.03 Total: 39.19 kcal Atomic # 16 Polarization: 96.01 SS G_CDS: -0.32 Total: 95.68 kcal Total: -66.71 -2.18 -68.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619487163.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.094 kcal (2) G-P(sol) polarization free energy of solvation -66.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds