Wall clock time and date at job start Tue Mar 31 2020 15:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47051 * 2 1 4 4 C 1.52996 * 109.47299 * 240.00070 * 2 1 3 5 5 C 1.52996 * 109.47198 * 59.99767 * 4 2 1 6 6 O 1.42901 * 109.47040 * 180.02562 * 5 4 2 7 7 C 1.53002 * 109.47452 * 119.99671 * 2 1 3 8 8 N 1.46505 * 109.47278 * 300.00311 * 7 2 1 9 9 S 1.65597 * 120.00072 * 164.99641 * 8 7 2 10 10 O 1.42098 * 106.40087 * 311.45861 * 9 8 7 11 11 O 1.42098 * 106.39917 * 178.54168 * 9 8 7 12 12 C 1.76200 * 107.21637 * 65.00174 * 9 8 7 13 13 C 1.38663 * 119.87357 * 270.24777 * 12 9 8 14 14 C 1.38609 * 120.49761 * 180.30197 * 13 12 9 15 15 C 1.37636 * 120.25144 * 359.45034 * 14 13 12 16 16 C 1.40702 * 119.74414 * 0.27080 * 15 14 13 17 17 C 1.41389 * 120.24759 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00485 * 204.39220 * 17 16 15 19 19 C 1.39942 * 119.99857 * 24.38333 * 17 16 15 20 20 N 1.30830 * 119.99921 * 17.87213 * 19 17 16 21 21 Si 1.86807 * 120.00314 * 197.86702 * 19 17 16 22 22 H 1.48500 * 109.46633 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46828 * 120.00062 * 21 19 17 24 24 H 1.48497 * 109.47200 * 240.00400 * 21 19 17 25 25 C 1.37598 * 119.87586 * 90.00318 * 12 9 8 26 26 H 1.09003 * 109.47008 * 300.00031 * 1 2 3 27 27 H 1.08992 * 109.47357 * 59.99768 * 1 2 3 28 28 H 1.08998 * 109.46863 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47184 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.46771 * 299.99859 * 3 2 1 31 31 H 1.09003 * 109.47240 * 60.00111 * 3 2 1 32 32 H 1.08997 * 109.47419 * 179.97438 * 4 2 1 33 33 H 1.08998 * 109.46756 * 299.99567 * 4 2 1 34 34 H 1.09006 * 109.47094 * 300.00072 * 5 4 2 35 35 H 1.08998 * 109.47431 * 60.00213 * 5 4 2 36 36 H 0.96709 * 113.99916 * 179.97438 * 6 5 4 37 37 H 1.08997 * 109.47200 * 180.02562 * 7 2 1 38 38 H 1.09003 * 109.46759 * 59.99855 * 7 2 1 39 39 H 0.97007 * 119.99457 * 345.00054 * 8 7 2 40 40 H 1.08001 * 119.74681 * 0.04757 * 13 12 9 41 41 H 1.08003 * 119.87315 * 179.72263 * 14 13 12 42 42 H 1.07999 * 120.13059 * 180.25214 * 15 14 13 43 43 H 0.97008 * 119.99884 * 179.97438 * 20 19 17 44 44 H 1.07997 * 120.12829 * 359.97438 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5300 0.0000 -2.4984 6 8 2.0059 -0.6740 -3.6652 7 6 2.0401 -0.7212 1.2493 8 7 1.5517 -0.0306 2.4455 9 16 1.6257 -0.7780 3.9213 10 8 1.0839 -2.0791 3.7397 11 8 1.1155 0.1512 4.8676 12 6 3.3302 -0.9984 4.3094 13 6 3.9845 -2.1554 3.9144 14 6 5.3235 -2.3450 4.2183 15 6 6.0217 -1.3793 4.9070 16 6 5.3696 -0.1987 5.3078 17 6 6.0765 0.8000 6.0163 18 1 5.5431 1.4905 6.6528 19 6 7.4673 0.8938 5.8928 20 7 8.0751 0.3174 4.8878 21 14 8.4560 1.8420 7.1628 22 1 7.5391 2.3948 8.1919 23 1 9.4339 0.9308 7.8099 24 1 9.1809 2.9537 6.4966 25 6 4.0083 -0.0196 4.9989 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.1300 -0.7208 -1.2495 33 1 1.6767 -1.7489 -1.2491 34 1 0.4399 -0.0001 -2.4984 35 1 1.8933 1.0276 -2.4985 36 1 1.7202 -0.2707 -4.4964 37 1 3.1300 -0.7207 1.2495 38 1 1.6767 -1.7489 1.2493 39 1 1.1850 0.8646 2.3729 40 1 3.4456 -2.9164 3.3695 41 1 5.8220 -3.2520 3.9096 42 1 7.0660 -1.5273 5.1392 43 1 9.0392 0.3827 4.8020 44 1 3.4979 0.8827 5.3018 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619487993.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:36 Heat of formation + Delta-G solvation = -127.560780 kcal Electronic energy + Delta-G solvation = -26161.262845 eV Core-core repulsion = 22397.507870 eV Total energy + Delta-G solvation = -3763.754976 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -38.94557 -37.63719 -36.73615 -36.53788 -35.28824 -33.85574 -33.40008 -30.07948 -29.78927 -28.86843 -27.44158 -26.44675 -25.48538 -22.88322 -21.88991 -20.98933 -19.20180 -18.89101 -18.05454 -17.65716 -16.83349 -16.02743 -15.90962 -15.62378 -15.18093 -14.94536 -14.60154 -14.50487 -14.13564 -13.76918 -13.47255 -13.33918 -13.26549 -12.82405 -12.58483 -12.08005 -11.89818 -11.85461 -11.72548 -11.60172 -11.59389 -11.50542 -11.39401 -11.38203 -10.98805 -10.96152 -10.90812 -10.89236 -10.60198 -10.49405 -10.06756 -9.78197 -9.65668 -9.36297 -9.11569 -8.03914 -7.70830 -6.93666 -4.54068 1.04944 2.19772 2.62273 2.99754 3.03763 3.06804 3.56406 3.82392 3.98563 4.25017 4.42455 4.53076 4.63087 4.81923 4.95781 5.04603 5.14987 5.20914 5.36496 5.40390 5.49612 5.55329 5.69253 5.70808 5.79449 5.87557 5.94694 5.99132 6.03473 6.09612 6.17888 6.26458 6.27299 6.65442 6.76084 6.84829 7.02670 7.19920 7.24939 7.38270 7.38473 7.72793 7.80844 7.94104 8.40111 8.66524 8.71517 10.01719 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013413 B = 0.003458 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.037136 B = 8094.211222 C = 9018.022744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.066 4.066 3 C -0.148 4.148 4 C -0.111 4.111 5 C 0.073 3.927 6 O -0.576 6.576 7 C 0.130 3.870 8 N -1.119 6.119 9 S 2.690 3.310 10 O -0.976 6.976 11 O -0.974 6.974 12 C -0.631 4.631 13 C -0.149 4.149 14 C -0.120 4.120 15 C -0.119 4.119 16 C 0.091 3.909 17 C -0.460 4.460 18 H 0.083 0.917 19 C 0.075 3.925 20 N -0.794 5.794 21 Si 0.911 3.089 22 H -0.259 1.259 23 H -0.271 1.271 24 H -0.273 1.273 25 C -0.124 4.124 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.048 0.952 35 H 0.049 0.951 36 H 0.377 0.623 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.412 0.588 40 H 0.106 0.894 41 H 0.098 0.902 42 H 0.125 0.875 43 H 0.283 0.717 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.683 1.675 -12.464 15.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.068 4.068 3 C -0.206 4.206 4 C -0.149 4.149 5 C -0.004 4.004 6 O -0.382 6.382 7 C 0.003 3.997 8 N -0.878 5.878 9 S 2.786 3.214 10 O -0.966 6.966 11 O -0.965 6.965 12 C -0.723 4.723 13 C -0.170 4.170 14 C -0.140 4.140 15 C -0.138 4.138 16 C 0.088 3.912 17 C -0.489 4.489 18 H 0.101 0.899 19 C -0.143 4.143 20 N -0.419 5.419 21 Si 0.735 3.265 22 H -0.182 1.182 23 H -0.196 1.196 24 H -0.199 1.199 25 C -0.145 4.145 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.224 0.776 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.247 0.753 40 H 0.124 0.876 41 H 0.116 0.884 42 H 0.142 0.858 43 H 0.094 0.906 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.857 0.834 -11.598 14.617 hybrid contribution 1.035 1.258 -0.065 1.630 sum -7.821 2.092 -11.663 14.198 Atomic orbital electron populations 1.21969 0.94098 1.02494 1.01854 1.20650 0.96211 0.96090 0.93819 1.21986 1.01974 0.94813 1.01804 1.21497 1.02054 0.99868 0.91457 1.22346 0.97473 0.95268 0.85350 1.86488 1.77744 1.57665 1.16260 1.21278 0.99235 0.95861 0.83280 1.55577 1.79009 1.29876 1.23350 1.01605 0.75044 0.72965 0.71816 1.93508 1.77865 1.39624 1.85561 1.93534 1.79603 1.63950 1.59385 1.29740 1.22833 1.04113 1.15620 1.20086 0.95141 0.96321 1.05467 1.20810 0.94117 0.98523 1.00547 1.21637 1.00281 0.92477 0.99444 1.17688 0.90831 0.92250 0.90457 1.19651 0.91607 1.13640 1.24039 0.89893 1.25935 0.98458 0.94905 0.94997 1.69792 1.11421 1.35671 1.25015 0.86214 0.79627 0.79562 0.81129 1.18212 1.19596 1.19867 1.20773 0.95900 0.96902 1.00919 0.92096 0.92498 0.92080 0.91749 0.92416 0.92127 0.90571 0.90739 0.93420 0.93324 0.77632 0.90997 0.90234 0.75317 0.87617 0.88405 0.85766 0.90647 0.87098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 7.95 37.16 0.30 -1.04 16 2 C -0.07 -0.66 0.57 -154.51 -0.09 -0.75 16 3 C -0.15 -1.41 7.95 37.16 0.30 -1.12 16 4 C -0.11 -1.09 4.64 -26.74 -0.12 -1.22 16 5 C 0.07 0.62 6.34 37.16 0.24 0.85 16 6 O -0.58 -5.37 13.66 -35.23 -0.48 -5.86 16 7 C 0.13 1.66 5.11 -4.04 -0.02 1.63 16 8 N -1.12 -15.74 5.33 -10.61 -0.06 -15.79 16 9 S 2.69 49.73 5.73 -107.50 -0.62 49.12 16 10 O -0.98 -19.64 16.74 -57.17 -0.96 -20.60 16 11 O -0.97 -20.27 17.27 -57.17 -0.99 -21.26 16 12 C -0.63 -13.64 5.94 -39.66 -0.24 -13.87 16 13 C -0.15 -3.20 9.53 -39.29 -0.37 -3.57 16 14 C -0.12 -2.69 10.02 -39.66 -0.40 -3.09 16 15 C -0.12 -2.94 8.70 -38.87 -0.34 -3.28 16 16 C 0.09 2.35 5.58 -106.82 -0.60 1.75 16 17 C -0.46 -11.76 9.05 -37.75 -0.34 -12.11 16 18 H 0.08 2.05 7.91 -52.49 -0.41 1.64 16 19 C 0.08 1.80 5.14 -17.34 -0.09 1.71 16 20 N -0.79 -19.48 10.95 55.55 0.61 -18.87 16 21 Si 0.91 17.98 29.60 -169.99 -5.03 12.95 16 22 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 23 H -0.27 -5.27 7.11 56.52 0.40 -4.86 16 24 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 25 C -0.12 -2.95 9.26 -38.87 -0.36 -3.31 16 26 H 0.06 0.56 7.20 -51.93 -0.37 0.19 16 27 H 0.06 0.42 6.43 -51.93 -0.33 0.09 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.45 6.43 -51.93 -0.33 0.12 16 31 H 0.06 0.57 6.60 -51.93 -0.34 0.23 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.35 6.43 -51.93 -0.33 0.01 16 35 H 0.05 0.37 6.43 -51.93 -0.33 0.04 16 36 H 0.38 1.74 9.12 45.56 0.42 2.15 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.08 1.02 7.75 -51.93 -0.40 0.62 16 39 H 0.41 4.91 6.47 -34.48 -0.22 4.69 16 40 H 0.11 2.04 7.61 -52.49 -0.40 1.64 16 41 H 0.10 1.91 8.06 -52.48 -0.42 1.49 16 42 H 0.12 3.13 6.15 -52.49 -0.32 2.81 16 43 H 0.28 6.28 8.30 -40.82 -0.34 5.94 16 44 H 0.11 2.54 7.60 -52.49 -0.40 2.14 16 LS Contribution 365.57 15.07 5.51 5.51 Total: -1.00 -31.60 365.57 -9.62 -41.22 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -5.47 Total: 10.99 kcal Atomic # 6 Polarization: -35.26 SS G_CDS: -2.14 Total: -37.40 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: 0.55 Total: -34.67 kcal Atomic # 8 Polarization: -45.29 SS G_CDS: -2.43 Total: -47.71 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.03 Total: 12.95 kcal Atomic # 16 Polarization: 49.73 SS G_CDS: -0.62 Total: 49.12 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.60 -9.62 -41.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619487993.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.343 kcal (2) G-P(sol) polarization free energy of solvation -31.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds