Wall clock time and date at job start Tue Mar 31 2020 15:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47051 * 2 1 4 4 C 1.52996 * 109.47299 * 240.00070 * 2 1 3 5 5 C 1.52996 * 109.47198 * 59.99767 * 4 2 1 6 6 O 1.42901 * 109.47040 * 180.02562 * 5 4 2 7 7 C 1.53002 * 109.47452 * 119.99671 * 2 1 3 8 8 N 1.46505 * 109.47278 * 300.00311 * 7 2 1 9 9 S 1.65597 * 120.00072 * 164.99641 * 8 7 2 10 10 O 1.42098 * 106.40087 * 311.45861 * 9 8 7 11 11 O 1.42098 * 106.39917 * 178.54168 * 9 8 7 12 12 C 1.76200 * 107.21637 * 65.00174 * 9 8 7 13 13 C 1.38663 * 119.87357 * 270.24777 * 12 9 8 14 14 C 1.38609 * 120.49761 * 180.30197 * 13 12 9 15 15 C 1.37636 * 120.25144 * 359.45034 * 14 13 12 16 16 C 1.40702 * 119.74414 * 0.27080 * 15 14 13 17 17 C 1.41389 * 120.24759 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00485 * 204.39220 * 17 16 15 19 19 C 1.39942 * 119.99857 * 24.38333 * 17 16 15 20 20 N 1.30830 * 119.99921 * 17.87213 * 19 17 16 21 21 Si 1.86807 * 120.00314 * 197.86702 * 19 17 16 22 22 H 1.48500 * 109.46633 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46828 * 120.00062 * 21 19 17 24 24 H 1.48497 * 109.47200 * 240.00400 * 21 19 17 25 25 C 1.37598 * 119.87586 * 90.00318 * 12 9 8 26 26 H 1.09003 * 109.47008 * 300.00031 * 1 2 3 27 27 H 1.08992 * 109.47357 * 59.99768 * 1 2 3 28 28 H 1.08998 * 109.46863 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47184 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.46771 * 299.99859 * 3 2 1 31 31 H 1.09003 * 109.47240 * 60.00111 * 3 2 1 32 32 H 1.08997 * 109.47419 * 179.97438 * 4 2 1 33 33 H 1.08998 * 109.46756 * 299.99567 * 4 2 1 34 34 H 1.09006 * 109.47094 * 300.00072 * 5 4 2 35 35 H 1.08998 * 109.47431 * 60.00213 * 5 4 2 36 36 H 0.96709 * 113.99916 * 179.97438 * 6 5 4 37 37 H 1.08997 * 109.47200 * 180.02562 * 7 2 1 38 38 H 1.09003 * 109.46759 * 59.99855 * 7 2 1 39 39 H 0.97007 * 119.99457 * 345.00054 * 8 7 2 40 40 H 1.08001 * 119.74681 * 0.04757 * 13 12 9 41 41 H 1.08003 * 119.87315 * 179.72263 * 14 13 12 42 42 H 1.07999 * 120.13059 * 180.25214 * 15 14 13 43 43 H 0.97008 * 119.99884 * 179.97438 * 20 19 17 44 44 H 1.07997 * 120.12829 * 359.97438 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5300 0.0000 -2.4984 6 8 2.0059 -0.6740 -3.6652 7 6 2.0401 -0.7212 1.2493 8 7 1.5517 -0.0306 2.4455 9 16 1.6257 -0.7780 3.9213 10 8 1.0839 -2.0791 3.7397 11 8 1.1155 0.1512 4.8676 12 6 3.3302 -0.9984 4.3094 13 6 3.9845 -2.1554 3.9144 14 6 5.3235 -2.3450 4.2183 15 6 6.0217 -1.3793 4.9070 16 6 5.3696 -0.1987 5.3078 17 6 6.0765 0.8000 6.0163 18 1 5.5431 1.4905 6.6528 19 6 7.4673 0.8938 5.8928 20 7 8.0751 0.3174 4.8878 21 14 8.4560 1.8420 7.1628 22 1 7.5391 2.3948 8.1919 23 1 9.4339 0.9308 7.8099 24 1 9.1809 2.9537 6.4966 25 6 4.0083 -0.0196 4.9989 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.1300 -0.7208 -1.2495 33 1 1.6767 -1.7489 -1.2491 34 1 0.4399 -0.0001 -2.4984 35 1 1.8933 1.0276 -2.4985 36 1 1.7202 -0.2707 -4.4964 37 1 3.1300 -0.7207 1.2495 38 1 1.6767 -1.7489 1.2493 39 1 1.1850 0.8646 2.3729 40 1 3.4456 -2.9164 3.3695 41 1 5.8220 -3.2520 3.9096 42 1 7.0660 -1.5273 5.1392 43 1 9.0392 0.3827 4.8020 44 1 3.4979 0.8827 5.3018 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619487993.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:36 Heat of formation + Delta-G solvation = -150.641491 kcal Electronic energy + Delta-G solvation = -26162.263700 eV Core-core repulsion = 22397.507870 eV Total energy + Delta-G solvation = -3764.755830 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.78465 -39.44002 -38.24368 -37.37288 -36.90084 -35.67341 -34.47202 -31.91584 -31.58501 -29.62504 -28.16957 -27.46017 -27.28984 -23.69556 -23.66320 -22.79711 -20.65605 -19.80599 -19.63203 -18.70610 -18.00619 -17.72265 -17.27884 -16.82097 -16.56853 -16.30511 -16.03635 -15.54673 -15.23704 -15.06805 -15.00825 -14.60700 -14.31231 -14.05425 -13.78384 -13.63626 -13.31328 -13.19039 -13.07911 -13.05097 -13.00018 -12.81306 -12.76263 -12.61244 -12.48509 -12.46395 -12.20897 -11.75181 -11.70901 -11.55268 -11.35367 -11.30986 -11.15146 -10.69440 -10.41029 -9.84904 -9.56337 -8.73873 -6.45518 -0.47456 0.40812 0.83928 1.37062 1.44136 1.52103 2.14585 2.17267 2.55155 2.79187 3.28961 3.51419 3.53723 3.69835 3.84099 4.11294 4.26306 4.30676 4.35155 4.44217 4.50724 4.57095 4.66184 4.72702 4.83204 4.85116 4.88009 4.90313 5.04391 5.05823 5.07729 5.10754 5.19782 5.23300 5.25208 5.41043 5.46995 5.52079 5.56515 5.88788 5.93821 6.09451 6.13123 6.52415 6.79425 6.84478 6.96542 8.24070 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013413 B = 0.003458 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.037136 B = 8094.211222 C = 9018.022744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.057 4.057 3 C -0.151 4.151 4 C -0.112 4.112 5 C 0.074 3.926 6 O -0.599 6.599 7 C 0.120 3.880 8 N -1.101 6.101 9 S 2.721 3.279 10 O -0.986 6.986 11 O -0.996 6.996 12 C -0.638 4.638 13 C -0.148 4.148 14 C -0.123 4.123 15 C -0.142 4.142 16 C 0.063 3.937 17 C -0.498 4.498 18 H 0.078 0.922 19 C 0.038 3.962 20 N -0.821 5.821 21 Si 0.982 3.018 22 H -0.260 1.260 23 H -0.263 1.263 24 H -0.263 1.263 25 C -0.144 4.144 26 H 0.059 0.941 27 H 0.078 0.922 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.397 0.603 37 H 0.062 0.938 38 H 0.081 0.919 39 H 0.424 0.576 40 H 0.131 0.869 41 H 0.126 0.874 42 H 0.113 0.887 43 H 0.292 0.708 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.525 2.053 -13.750 16.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.059 4.059 3 C -0.208 4.208 4 C -0.150 4.150 5 C -0.003 4.003 6 O -0.408 6.408 7 C -0.006 4.006 8 N -0.865 5.865 9 S 2.813 3.187 10 O -0.976 6.976 11 O -0.986 6.986 12 C -0.726 4.726 13 C -0.169 4.169 14 C -0.142 4.142 15 C -0.161 4.161 16 C 0.059 3.941 17 C -0.527 4.527 18 H 0.096 0.904 19 C -0.177 4.177 20 N -0.446 5.446 21 Si 0.803 3.197 22 H -0.184 1.184 23 H -0.187 1.187 24 H -0.188 1.188 25 C -0.165 4.165 26 H 0.078 0.922 27 H 0.097 0.903 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.246 0.754 37 H 0.081 0.919 38 H 0.099 0.901 39 H 0.262 0.738 40 H 0.149 0.851 41 H 0.144 0.856 42 H 0.131 0.869 43 H 0.103 0.897 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.682 1.211 -12.895 16.170 hybrid contribution 1.210 1.074 0.194 1.630 sum -8.471 2.285 -12.701 15.437 Atomic orbital electron populations 1.22005 0.92943 1.02720 1.02931 1.20565 0.97018 0.95962 0.92308 1.22023 1.01220 0.94640 1.02937 1.21480 1.01243 0.99922 0.92339 1.22342 0.98301 0.95233 0.84398 1.86432 1.78277 1.58565 1.17528 1.21507 0.98878 0.96379 0.83804 1.55192 1.78546 1.30566 1.22169 1.00716 0.73263 0.72494 0.72185 1.93492 1.77335 1.40679 1.86060 1.93500 1.79424 1.64447 1.61243 1.30264 1.24744 1.03406 1.14219 1.20461 0.95028 0.96674 1.04730 1.21140 0.94645 0.98904 0.99493 1.21637 1.00082 0.93263 1.01163 1.18041 0.91947 0.92896 0.91179 1.19874 0.92985 1.14499 1.25324 0.90412 1.26729 0.98785 0.95671 0.96544 1.69822 1.12202 1.36449 1.26139 0.85150 0.77897 0.78361 0.78304 1.18388 1.18742 1.18793 1.20851 0.95728 0.97833 1.02128 0.92172 0.90345 0.92312 0.93034 0.90245 0.92084 0.91945 0.91222 0.91823 0.92330 0.75366 0.91944 0.90054 0.73754 0.85089 0.85637 0.86946 0.89750 0.87211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 7.95 71.98 0.57 -1.73 16 2 C -0.06 -1.03 0.57 -52.18 -0.03 -1.06 16 3 C -0.15 -2.59 7.95 71.98 0.57 -2.01 16 4 C -0.11 -2.03 4.64 30.59 0.14 -1.89 16 5 C 0.07 1.07 6.34 71.98 0.46 1.53 16 6 O -0.60 -9.98 13.66 -148.98 -2.04 -12.01 16 7 C 0.12 2.92 5.11 86.38 0.44 3.36 16 8 N -1.10 -29.60 5.33 -187.48 -1.00 -30.60 16 9 S 2.72 98.30 5.73 -56.49 -0.32 97.98 16 10 O -0.99 -38.17 16.74 -128.00 -2.14 -40.31 16 11 O -1.00 -40.93 17.27 -128.00 -2.21 -43.14 16 12 C -0.64 -27.57 5.94 22.22 0.13 -27.44 16 13 C -0.15 -6.27 9.53 22.46 0.21 -6.05 16 14 C -0.12 -5.46 10.02 22.22 0.22 -5.24 16 15 C -0.14 -7.21 8.70 22.73 0.20 -7.02 16 16 C 0.06 3.33 5.58 -21.29 -0.12 3.21 16 17 C -0.50 -26.41 9.05 23.46 0.21 -26.19 16 18 H 0.08 4.03 7.91 -2.91 -0.02 4.00 16 19 C 0.04 1.87 5.14 85.25 0.44 2.31 16 20 N -0.82 -41.05 10.95 21.83 0.24 -40.81 16 21 Si 0.98 37.14 29.60 68.60 2.03 39.17 16 22 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 23 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 24 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 25 C -0.14 -7.08 9.26 22.73 0.21 -6.87 16 26 H 0.06 0.95 7.20 -2.39 -0.02 0.93 16 27 H 0.08 0.89 6.43 -2.39 -0.02 0.87 16 28 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.08 1.02 6.43 -2.38 -0.02 1.00 16 31 H 0.06 1.03 6.60 -2.39 -0.02 1.02 16 32 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.06 0.71 6.43 -2.38 -0.02 0.70 16 35 H 0.06 0.72 6.43 -2.39 -0.02 0.71 16 36 H 0.40 2.77 9.12 -74.05 -0.68 2.09 16 37 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.08 1.97 7.75 -2.39 -0.02 1.95 16 39 H 0.42 9.45 6.47 -96.74 -0.63 8.83 16 40 H 0.13 4.82 7.61 -2.91 -0.02 4.80 16 41 H 0.13 4.76 8.06 -2.91 -0.02 4.74 16 42 H 0.11 5.89 6.15 -2.91 -0.02 5.87 16 43 H 0.29 13.07 8.30 -92.70 -0.77 12.30 16 44 H 0.11 5.24 7.60 -2.91 -0.02 5.22 16 Total: -1.00 -68.31 365.57 -2.05 -70.35 By element: Atomic # 1 Polarization: 34.75 SS G_CDS: -0.27 Total: 34.48 kcal Atomic # 6 Polarization: -78.76 SS G_CDS: 3.66 Total: -75.10 kcal Atomic # 7 Polarization: -70.65 SS G_CDS: -0.76 Total: -71.41 kcal Atomic # 8 Polarization: -89.08 SS G_CDS: -6.39 Total: -95.47 kcal Atomic # 14 Polarization: 37.14 SS G_CDS: 2.03 Total: 39.17 kcal Atomic # 16 Polarization: 98.30 SS G_CDS: -0.32 Total: 97.98 kcal Total: -68.31 -2.05 -70.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619487993.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.287 kcal (2) G-P(sol) polarization free energy of solvation -68.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds