Wall clock time and date at job start Tue Mar 31 2020 15:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.42896 * 114.00277 * 2 1 4 4 H 1.09006 * 109.46793 * 30.71392 * 3 2 1 5 5 C 1.52998 * 109.47186 * 150.71727 * 3 2 1 6 6 N 1.46496 * 109.47188 * 299.99916 * 5 3 2 7 7 S 1.65603 * 119.99944 * 164.99743 * 6 5 3 8 8 O 1.42104 * 106.40096 * 311.46612 * 7 6 5 9 9 O 1.42095 * 106.40189 * 178.53952 * 7 6 5 10 10 C 1.76208 * 107.21694 * 65.00052 * 7 6 5 11 11 C 1.38654 * 119.87543 * 269.72734 * 10 7 6 12 12 C 1.38618 * 120.49916 * 179.71723 * 11 10 7 13 13 C 1.37637 * 120.24304 * 0.55642 * 12 11 10 14 14 C 1.40697 * 119.75174 * 359.72334 * 13 12 11 15 15 C 1.41392 * 120.24556 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99975 * 205.28668 * 15 14 13 17 17 C 1.39946 * 120.00202 * 25.29071 * 15 14 13 18 18 N 1.30818 * 119.99648 * 14.13813 * 17 15 14 19 19 Si 1.86797 * 120.00007 * 194.13930 * 17 15 14 20 20 H 1.48497 * 109.47333 * 89.99541 * 19 17 15 21 21 H 1.48498 * 109.47300 * 210.00131 * 19 17 15 22 22 H 1.48504 * 109.47065 * 330.00119 * 19 17 15 23 23 C 1.37595 * 119.87131 * 89.99574 * 10 7 6 24 24 C 1.53001 * 109.47129 * 270.72078 * 3 2 1 25 25 C 1.52995 * 109.47447 * 176.40468 * 24 3 2 26 26 C 1.52999 * 109.47023 * 296.40808 * 24 3 2 27 27 H 1.08994 * 109.46644 * 184.54173 * 1 2 3 28 28 H 1.08997 * 109.46945 * 304.54146 * 1 2 3 29 29 H 1.09001 * 109.46701 * 64.54296 * 1 2 3 30 30 H 1.09004 * 109.46878 * 180.02562 * 5 3 2 31 31 H 1.09005 * 109.47091 * 60.00418 * 5 3 2 32 32 H 0.96998 * 119.99903 * 345.00251 * 6 5 3 33 33 H 1.07994 * 119.75156 * 0.02562 * 11 10 7 34 34 H 1.07996 * 119.87625 * 180.25625 * 12 11 10 35 35 H 1.08007 * 120.12566 * 179.70213 * 13 12 11 36 36 H 0.97008 * 119.99567 * 180.02562 * 18 17 15 37 37 H 1.07997 * 120.13101 * 359.97438 * 23 10 7 38 38 H 1.08999 * 109.47143 * 56.40476 * 24 3 2 39 39 H 1.09001 * 109.46929 * 66.66793 * 25 24 3 40 40 H 1.09000 * 109.47280 * 186.67272 * 25 24 3 41 41 H 1.08999 * 109.47019 * 306.67611 * 25 24 3 42 42 H 1.08998 * 109.47440 * 180.02562 * 26 24 3 43 43 H 1.09007 * 109.46821 * 300.00137 * 26 24 3 44 44 H 1.08999 * 109.47613 * 59.99742 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 1 1.3510 1.9967 0.5249 5 6 3.3672 1.2595 0.7055 6 7 3.1844 0.8064 2.0866 7 16 4.4902 0.3059 2.9736 8 8 5.2069 -0.6063 2.1527 9 8 3.9947 -0.0318 4.2618 10 6 5.5379 1.7053 3.1946 11 6 6.5354 1.9742 2.2697 12 6 7.3631 3.0748 2.4278 13 6 7.2100 3.9072 3.5132 14 6 6.2050 3.6408 4.4611 15 6 6.0382 4.4893 5.5797 16 1 5.5897 4.1075 6.4850 17 6 6.4542 5.8239 5.5140 18 7 6.7367 6.3646 4.3568 19 14 6.6060 6.8331 7.0785 20 1 7.9785 6.6918 7.6276 21 1 6.3393 8.2618 6.7739 22 1 5.6207 6.3478 8.0781 23 6 5.3667 2.5238 4.2872 24 6 2.2013 1.7787 -1.4424 25 6 2.7399 3.2107 -1.4423 26 6 3.1965 0.8594 -2.1533 27 1 -0.3632 -1.0244 0.0814 28 1 -0.3633 0.5827 0.8465 29 1 -0.3633 0.4417 -0.9279 30 1 3.8103 2.2554 0.7059 31 1 4.0265 0.5682 0.1805 32 1 2.2984 0.7995 2.4815 33 1 6.6651 1.3241 1.4172 34 1 8.1341 3.2771 1.6991 35 1 7.8592 4.7615 3.6370 36 1 7.0254 7.2896 4.3112 37 1 4.5917 2.3103 5.0084 38 1 1.2444 1.7505 -1.9637 39 1 3.7478 3.2197 -1.0274 40 1 2.7640 3.5899 -2.4639 41 1 2.0916 3.8426 -0.8354 42 1 3.3329 1.1968 -3.1807 43 1 4.1534 0.8876 -1.6319 44 1 2.8128 -0.1608 -2.1534 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619488380.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:53 Heat of formation + Delta-G solvation = -118.265497 kcal Electronic energy + Delta-G solvation = -26454.403590 eV Core-core repulsion = 22691.051688 eV Total energy + Delta-G solvation = -3763.351902 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.16137 -37.64253 -36.60497 -35.42382 -35.24018 -34.09349 -33.83887 -30.07433 -29.77549 -28.25941 -27.29619 -26.09088 -25.49373 -23.72298 -21.87717 -20.99448 -19.86554 -18.97170 -17.96654 -17.10029 -16.73840 -16.49879 -15.90472 -15.31756 -15.16685 -14.95965 -14.68775 -14.35862 -13.89178 -13.74323 -13.49678 -13.36431 -13.30293 -13.00277 -12.57221 -12.22152 -12.02098 -11.89818 -11.62604 -11.57195 -11.53353 -11.42409 -11.38884 -11.35628 -11.24785 -10.97306 -10.95645 -10.88634 -10.61285 -10.53877 -9.77695 -9.66322 -9.59291 -9.39340 -9.07474 -8.03518 -7.69713 -6.90416 -4.55343 1.07763 2.20167 2.62297 2.99514 3.03619 3.06201 3.56564 3.66098 3.82665 4.29233 4.45213 4.55913 4.67283 4.87951 5.04435 5.09460 5.18884 5.20050 5.28969 5.40014 5.47309 5.53290 5.57980 5.62503 5.66685 5.83296 5.89745 5.96589 6.04294 6.12456 6.18153 6.22896 6.29181 6.65446 6.76993 6.84954 7.04006 7.07077 7.20756 7.28409 7.38316 7.72850 7.81526 7.94613 8.40608 8.67160 8.71531 10.03857 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.014584 B = 0.003618 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.499427 B = 7737.788365 C = 8271.272612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.374 6.374 3 C 0.087 3.913 4 H 0.069 0.931 5 C 0.120 3.880 6 N -1.116 6.116 7 S 2.691 3.309 8 O -0.974 6.974 9 O -0.974 6.974 10 C -0.634 4.634 11 C -0.147 4.147 12 C -0.122 4.122 13 C -0.116 4.116 14 C 0.090 3.910 15 C -0.460 4.460 16 H 0.082 0.918 17 C 0.074 3.926 18 N -0.799 5.799 19 Si 0.914 3.086 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.261 1.261 23 C -0.122 4.122 24 C -0.114 4.114 25 C -0.154 4.154 26 C -0.149 4.149 27 H 0.084 0.916 28 H 0.042 0.958 29 H 0.038 0.962 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.412 0.588 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.128 0.872 36 H 0.282 0.718 37 H 0.111 0.889 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.052 0.948 43 H 0.062 0.938 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.176 -3.616 -10.306 14.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.292 6.292 3 C 0.028 3.972 4 H 0.087 0.913 5 C -0.007 4.007 6 N -0.873 5.873 7 S 2.786 3.214 8 O -0.964 6.964 9 O -0.964 6.964 10 C -0.726 4.726 11 C -0.169 4.169 12 C -0.142 4.142 13 C -0.136 4.136 14 C 0.086 3.914 15 C -0.489 4.489 16 H 0.100 0.900 17 C -0.144 4.144 18 N -0.425 5.425 19 Si 0.738 3.262 20 H -0.192 1.192 21 H -0.202 1.202 22 H -0.185 1.185 23 C -0.144 4.144 24 C -0.134 4.134 25 C -0.211 4.211 26 C -0.207 4.207 27 H 0.103 0.897 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.102 0.898 31 H 0.107 0.893 32 H 0.246 0.754 33 H 0.124 0.876 34 H 0.116 0.884 35 H 0.146 0.854 36 H 0.093 0.907 37 H 0.129 0.871 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.081 0.919 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.696 -4.431 -10.192 14.112 hybrid contribution -0.338 1.664 0.670 1.825 sum -9.034 -2.767 -9.523 13.415 Atomic orbital electron populations 1.22805 0.81527 1.02661 0.99819 1.87989 1.19128 1.27231 1.94881 1.22436 0.94644 0.84995 0.95148 0.91338 1.21535 0.96985 1.01122 0.81033 1.55397 1.24014 1.84970 1.22943 1.01607 0.72841 0.74523 0.72403 1.93510 1.72513 1.61040 1.69323 1.93530 1.80165 1.83386 1.39360 1.29784 1.15526 1.21340 1.05939 1.20109 0.98579 0.99215 0.98948 1.20829 0.99237 0.95628 0.98465 1.21725 0.97756 0.99295 0.94806 1.17701 0.89764 0.90968 0.92926 1.19642 1.35443 0.94290 0.99548 0.89967 1.25921 0.92477 0.98430 0.97545 1.69756 1.32945 1.14425 1.25341 0.86212 0.79882 0.78403 0.81710 1.19184 1.20217 1.18465 1.20803 1.00189 0.97244 0.96116 1.21558 1.00156 0.95997 0.95663 1.21922 1.02067 0.94989 1.02132 1.21867 0.99259 0.99764 0.99768 0.89740 0.93974 0.94292 0.89810 0.89282 0.75437 0.87569 0.88373 0.85403 0.90659 0.87059 0.90930 0.91538 0.92297 0.92412 0.92857 0.91874 0.91859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.87 101.05 1.10 1.35 16 2 O -0.37 -4.44 9.69 -35.23 -0.34 -4.78 16 3 C 0.09 0.97 1.98 -26.73 -0.05 0.92 16 4 H 0.07 0.69 7.73 -51.93 -0.40 0.29 16 5 C 0.12 1.63 5.20 -4.05 -0.02 1.61 16 6 N -1.12 -16.90 5.86 -10.61 -0.06 -16.96 16 7 S 2.69 51.66 5.74 -107.50 -0.62 51.04 16 8 O -0.97 -20.37 16.73 -57.17 -0.96 -21.33 16 9 O -0.97 -20.91 17.26 -57.17 -0.99 -21.90 16 10 C -0.63 -13.80 5.94 -39.66 -0.24 -14.04 16 11 C -0.15 -3.15 9.53 -39.29 -0.37 -3.53 16 12 C -0.12 -2.70 10.02 -39.66 -0.40 -3.10 16 13 C -0.12 -2.86 8.69 -38.87 -0.34 -3.20 16 14 C 0.09 2.31 5.58 -106.82 -0.60 1.71 16 15 C -0.46 -11.74 9.07 -37.74 -0.34 -12.08 16 16 H 0.08 2.03 7.88 -52.49 -0.41 1.62 16 17 C 0.07 1.76 5.21 -17.34 -0.09 1.67 16 18 N -0.80 -19.50 10.79 55.55 0.60 -18.90 16 19 Si 0.91 17.99 29.58 -169.99 -5.03 12.96 16 20 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 21 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 22 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 23 C -0.12 -2.92 9.26 -38.87 -0.36 -3.28 16 24 C -0.11 -1.11 2.90 -90.62 -0.26 -1.37 16 25 C -0.15 -1.45 8.74 37.15 0.32 -1.13 16 26 C -0.15 -1.50 8.63 37.16 0.32 -1.18 16 27 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.04 0.33 7.98 -51.93 -0.41 -0.09 16 29 H 0.04 0.29 7.83 -51.93 -0.41 -0.12 16 30 H 0.08 1.12 6.68 -51.93 -0.35 0.77 16 31 H 0.09 1.26 5.97 -51.93 -0.31 0.95 16 32 H 0.41 5.40 8.65 -34.47 -0.30 5.10 16 33 H 0.11 2.04 7.59 -52.49 -0.40 1.65 16 34 H 0.10 1.89 8.06 -52.49 -0.42 1.46 16 35 H 0.13 3.21 6.08 -52.48 -0.32 2.89 16 36 H 0.28 6.26 8.30 -40.82 -0.34 5.92 16 37 H 0.11 2.57 7.60 -52.49 -0.40 2.17 16 38 H 0.07 0.63 7.83 -51.93 -0.41 0.23 16 39 H 0.07 0.68 6.87 -51.93 -0.36 0.33 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.68 6.36 -51.92 -0.33 0.35 16 44 H 0.06 0.67 7.78 -51.93 -0.40 0.27 16 LS Contribution 370.36 15.07 5.58 5.58 Total: -1.00 -30.58 370.36 -9.59 -40.17 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -6.45 Total: 9.77 kcal Atomic # 6 Polarization: -34.32 SS G_CDS: -1.33 Total: -35.65 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: 0.54 Total: -35.86 kcal Atomic # 8 Polarization: -45.73 SS G_CDS: -2.28 Total: -48.01 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.96 kcal Atomic # 16 Polarization: 51.66 SS G_CDS: -0.62 Total: 51.04 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.58 -9.59 -40.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619488380.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.099 kcal (2) G-P(sol) polarization free energy of solvation -30.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds