Wall clock time and date at job start Tue Mar 31 2020 15:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00395 * 2 1 4 4 H 1.09004 * 109.46764 * 344.76097 * 3 2 1 5 5 C 1.52994 * 109.47631 * 224.76122 * 3 2 1 6 6 N 1.46503 * 109.47332 * 61.93276 * 5 3 2 7 7 S 1.65594 * 119.99970 * 163.24522 * 6 5 3 8 8 O 1.42095 * 106.40720 * 311.46615 * 7 6 5 9 9 O 1.42106 * 106.40221 * 178.54392 * 7 6 5 10 10 C 1.76202 * 107.21772 * 65.00488 * 7 6 5 11 11 C 1.38658 * 119.87646 * 269.72565 * 10 7 6 12 12 C 1.38614 * 120.50182 * 180.27783 * 11 10 7 13 13 C 1.37641 * 120.24858 * 359.97438 * 12 11 10 14 14 C 1.40699 * 119.74563 * 0.02562 * 13 12 11 15 15 C 1.41391 * 120.24662 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99913 * 147.92601 * 15 14 13 17 17 C 1.39943 * 119.99773 * 327.92844 * 15 14 13 18 18 N 1.30828 * 120.00220 * 168.07405 * 17 15 14 19 19 Si 1.86804 * 119.99917 * 348.07040 * 17 15 14 20 20 H 1.48503 * 109.47105 * 88.77846 * 19 17 15 21 21 H 1.48501 * 109.46899 * 208.77379 * 19 17 15 22 22 H 1.48493 * 109.47372 * 328.77431 * 19 17 15 23 23 C 1.37605 * 119.87510 * 89.99457 * 10 7 6 24 24 C 1.53006 * 109.47011 * 104.75490 * 3 2 1 25 25 C 1.52999 * 109.47501 * 293.83720 * 24 3 2 26 26 C 1.52998 * 109.46785 * 53.83900 * 24 3 2 27 27 H 1.09001 * 109.47313 * 185.37812 * 1 2 3 28 28 H 1.09005 * 109.46861 * 305.37730 * 1 2 3 29 29 H 1.08998 * 109.47560 * 65.37448 * 1 2 3 30 30 H 1.09000 * 109.46820 * 301.93380 * 5 3 2 31 31 H 1.08996 * 109.47434 * 181.93858 * 5 3 2 32 32 H 0.97000 * 119.99770 * 343.25279 * 6 5 3 33 33 H 1.08000 * 119.74813 * 0.27247 * 11 10 7 34 34 H 1.08000 * 119.87395 * 179.97438 * 12 11 10 35 35 H 1.07998 * 120.12521 * 179.97438 * 13 12 11 36 36 H 0.97001 * 119.99748 * 179.97438 * 18 17 15 37 37 H 1.08001 * 120.12623 * 359.70454 * 23 10 7 38 38 H 1.09006 * 109.46606 * 173.83647 * 24 3 2 39 39 H 1.08996 * 109.46849 * 66.05927 * 25 24 3 40 40 H 1.08994 * 109.47097 * 186.05983 * 25 24 3 41 41 H 1.08999 * 109.46971 * 306.06200 * 25 24 3 42 42 H 1.08997 * 109.47277 * 59.99983 * 26 24 3 43 43 H 1.09002 * 109.46938 * 179.97438 * 26 24 3 44 44 H 1.09003 * 109.47357 * 299.99834 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.2523 2.0407 -0.2701 5 6 3.1534 1.3548 -1.0157 6 7 2.6256 1.0974 -2.3579 7 16 3.5264 1.4892 -3.6910 8 8 3.9812 2.8205 -3.4909 9 8 2.7641 1.0900 -4.8219 10 6 4.9603 0.4654 -3.6709 11 6 6.1096 0.8990 -3.0276 12 6 7.2468 0.1066 -3.0087 13 6 7.2463 -1.1219 -3.6294 14 6 6.0858 -1.5722 -4.2853 15 6 6.0733 -2.8326 -4.9259 16 1 5.1604 -3.4080 -4.9677 17 6 7.2440 -3.3343 -5.5057 18 7 7.3005 -4.5839 -5.8891 19 14 8.7259 -2.2198 -5.7323 20 1 9.5733 -2.2691 -4.5138 21 1 9.5157 -2.6785 -6.9033 22 1 8.2669 -0.8261 -5.9601 23 6 4.9372 -0.7590 -4.2983 24 6 2.5534 1.6218 1.3950 25 6 1.3905 1.7242 2.3840 26 6 3.5028 0.5067 1.8376 27 1 -0.3634 -1.0231 0.0963 28 1 -0.3633 0.5950 0.8380 29 1 -0.3634 0.4282 -0.9342 30 1 3.8949 0.5962 -0.7652 31 1 3.6190 2.3400 -0.9911 32 1 1.7485 0.6975 -2.4656 33 1 6.1189 1.8614 -2.5377 34 1 8.1366 0.4545 -2.5050 35 1 8.1335 -1.7375 -3.6138 36 1 8.1119 -4.9315 -6.2913 37 1 4.0408 -1.0950 -4.7984 38 1 3.0925 2.5689 1.3687 39 1 0.9178 0.7479 2.4911 40 1 1.7654 2.0546 3.3526 41 1 0.6600 2.4428 2.0127 42 1 4.3312 0.4338 1.1331 43 1 3.8900 0.7323 2.8312 44 1 2.9637 -0.4404 1.8638 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619488381.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:56 Heat of formation + Delta-G solvation = -115.254969 kcal Electronic energy + Delta-G solvation = -26440.998244 eV Core-core repulsion = 22677.776888 eV Total energy + Delta-G solvation = -3763.221356 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.24809 -37.94516 -36.77542 -35.41504 -35.11522 -34.35875 -33.74779 -30.73796 -30.18596 -28.84468 -27.24109 -26.29449 -25.38203 -23.11123 -22.42090 -20.91575 -20.37650 -19.15077 -18.02774 -17.25653 -16.82528 -16.38827 -16.27865 -15.77260 -15.38140 -15.00274 -14.74884 -14.36854 -14.14903 -13.82370 -13.79884 -13.26205 -13.15187 -13.00950 -12.88541 -12.40179 -12.26308 -12.14061 -11.88088 -11.76823 -11.71128 -11.63625 -11.52600 -11.47706 -11.30392 -11.00657 -10.89149 -10.84147 -10.78471 -10.33399 -9.96916 -9.81626 -9.64595 -9.38919 -9.12999 -8.28773 -7.86997 -7.03735 -4.64067 0.89870 1.88899 2.40933 2.99430 3.12167 3.20054 3.41449 3.59272 3.86117 4.09863 4.33534 4.48455 4.60289 4.74276 4.91177 4.98299 5.07223 5.14605 5.20206 5.25939 5.39641 5.45166 5.51699 5.54320 5.64199 5.67454 5.78463 5.80254 5.90562 5.97887 6.02701 6.11940 6.17622 6.28849 6.44457 6.56508 6.87456 7.03344 7.04477 7.15504 7.18212 7.36448 7.61347 7.76896 8.19823 8.41981 8.63121 9.98596 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015700 B = 0.003644 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.969120 B = 7683.001797 C = 8036.262523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.371 6.371 3 C 0.087 3.913 4 H 0.070 0.930 5 C 0.114 3.886 6 N -1.116 6.116 7 S 2.690 3.310 8 O -0.973 6.973 9 O -0.969 6.969 10 C -0.626 4.626 11 C -0.155 4.155 12 C -0.093 4.093 13 C -0.200 4.200 14 C 0.074 3.926 15 C -0.443 4.443 16 H 0.095 0.905 17 C 0.082 3.918 18 N -0.807 5.807 19 Si 0.911 3.089 20 H -0.268 1.268 21 H -0.288 1.288 22 H -0.245 1.245 23 C -0.098 4.098 24 C -0.112 4.112 25 C -0.147 4.147 26 C -0.146 4.146 27 H 0.085 0.915 28 H 0.042 0.958 29 H 0.041 0.959 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.415 0.585 33 H 0.112 0.888 34 H 0.103 0.897 35 H 0.109 0.891 36 H 0.287 0.713 37 H 0.120 0.880 38 H 0.082 0.918 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.051 0.949 42 H 0.060 0.940 43 H 0.051 0.949 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.006 9.737 13.704 19.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.289 6.289 3 C 0.027 3.973 4 H 0.088 0.912 5 C -0.012 4.012 6 N -0.875 5.875 7 S 2.785 3.215 8 O -0.963 6.963 9 O -0.959 6.959 10 C -0.717 4.717 11 C -0.176 4.176 12 C -0.112 4.112 13 C -0.219 4.219 14 C 0.070 3.930 15 C -0.472 4.472 16 H 0.113 0.887 17 C -0.137 4.137 18 N -0.431 5.431 19 Si 0.738 3.262 20 H -0.194 1.194 21 H -0.216 1.216 22 H -0.168 1.168 23 C -0.119 4.119 24 C -0.131 4.131 25 C -0.205 4.205 26 C -0.203 4.203 27 H 0.104 0.896 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.098 0.902 31 H 0.108 0.892 32 H 0.248 0.752 33 H 0.130 0.870 34 H 0.122 0.878 35 H 0.127 0.873 36 H 0.098 0.902 37 H 0.138 0.862 38 H 0.100 0.900 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.070 0.930 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.864 10.041 12.971 18.645 hybrid contribution 0.697 -0.323 0.083 0.773 sum -8.167 9.718 13.054 18.208 Atomic orbital electron populations 1.22919 0.81444 1.02834 0.99958 1.87985 1.19179 1.26934 1.94825 1.22397 0.95161 0.85588 0.94118 0.91191 1.21560 0.96407 1.02404 0.80851 1.55437 1.31406 1.80862 1.19786 1.01676 0.73778 0.74008 0.72042 1.93516 1.82221 1.34931 1.85614 1.93558 1.70573 1.83831 1.47928 1.29951 1.16839 1.11844 1.13053 1.20081 0.93008 0.99645 1.04907 1.20702 0.96914 0.94559 0.99026 1.21419 0.99619 0.97937 1.02959 1.17820 0.91266 0.92703 0.91230 1.19521 0.98003 0.99835 1.29817 0.88659 1.26140 0.99767 0.94997 0.92825 1.69635 1.29607 1.13939 1.29931 0.86363 0.80065 0.82300 0.77497 1.19383 1.21576 1.16846 1.20886 0.99905 0.91633 0.99429 1.21534 0.97358 1.00085 0.94150 1.21869 0.97841 1.01817 0.98945 1.21791 0.99076 0.98719 1.00751 0.89643 0.93894 0.94061 0.90172 0.89222 0.75150 0.87021 0.87848 0.87321 0.90217 0.86198 0.90019 0.92182 0.92447 0.93012 0.92050 0.93021 0.91622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.41 101.05 1.05 1.26 16 2 O -0.37 -4.05 8.83 -35.23 -0.31 -4.36 16 3 C 0.09 0.86 2.06 -26.73 -0.06 0.81 16 4 H 0.07 0.61 7.66 -51.93 -0.40 0.21 16 5 C 0.11 1.39 5.65 -4.04 -0.02 1.36 16 6 N -1.12 -15.38 5.95 -10.62 -0.06 -15.45 16 7 S 2.69 47.92 5.74 -107.50 -0.62 47.30 16 8 O -0.97 -18.61 16.71 -57.17 -0.96 -19.56 16 9 O -0.97 -19.71 17.27 -57.17 -0.99 -20.70 16 10 C -0.63 -12.92 5.94 -39.66 -0.24 -13.16 16 11 C -0.16 -3.11 9.53 -39.29 -0.37 -3.49 16 12 C -0.09 -1.92 10.02 -39.66 -0.40 -2.32 16 13 C -0.20 -4.64 7.12 -38.87 -0.28 -4.92 16 14 C 0.07 1.84 5.11 -106.83 -0.55 1.29 16 15 C -0.44 -11.77 9.60 -37.74 -0.36 -12.13 16 16 H 0.10 2.63 8.06 -52.49 -0.42 2.21 16 17 C 0.08 2.10 5.47 -17.34 -0.09 2.01 16 18 N -0.81 -21.15 13.93 55.55 0.77 -20.38 16 19 Si 0.91 20.42 24.44 -169.99 -4.15 16.26 16 20 H -0.27 -5.71 6.49 56.52 0.37 -5.34 16 21 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.25 -5.67 6.87 56.52 0.39 -5.28 16 23 C -0.10 -2.26 9.26 -38.87 -0.36 -2.62 16 24 C -0.11 -0.96 2.74 -90.62 -0.25 -1.21 16 25 C -0.15 -1.07 8.12 37.16 0.30 -0.77 16 26 C -0.15 -1.39 8.76 37.16 0.33 -1.06 16 27 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.04 0.29 6.50 -51.93 -0.34 -0.05 16 29 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 1.03 6.69 -51.93 -0.35 0.68 16 31 H 0.09 1.01 7.72 -51.93 -0.40 0.61 16 32 H 0.41 5.04 8.40 -34.47 -0.29 4.75 16 33 H 0.11 1.96 7.60 -52.49 -0.40 1.56 16 34 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 35 H 0.11 2.48 4.39 -52.49 -0.23 2.25 16 36 H 0.29 6.81 8.30 -40.82 -0.34 6.47 16 37 H 0.12 2.68 7.61 -52.49 -0.40 2.28 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.46 7.08 -51.93 -0.37 0.09 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.06 0.63 6.65 -51.93 -0.35 0.28 16 43 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.69 7.53 -51.93 -0.39 0.29 16 LS Contribution 364.20 15.07 5.49 5.49 Total: -1.00 -30.98 364.20 -8.59 -39.57 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -6.47 Total: 6.76 kcal Atomic # 6 Polarization: -33.65 SS G_CDS: -1.30 Total: -34.94 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: 0.71 Total: -35.82 kcal Atomic # 8 Polarization: -42.36 SS G_CDS: -2.25 Total: -44.62 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.15 Total: 16.26 kcal Atomic # 16 Polarization: 47.92 SS G_CDS: -0.62 Total: 47.30 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.98 -8.59 -39.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619488381.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.685 kcal (2) G-P(sol) polarization free energy of solvation -30.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds