Wall clock time and date at job start Tue Mar 31 2020 15:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00395 * 2 1 4 4 H 1.09004 * 109.46764 * 344.76097 * 3 2 1 5 5 C 1.52994 * 109.47631 * 224.76122 * 3 2 1 6 6 N 1.46503 * 109.47332 * 61.93276 * 5 3 2 7 7 S 1.65594 * 119.99970 * 163.24522 * 6 5 3 8 8 O 1.42095 * 106.40720 * 311.46615 * 7 6 5 9 9 O 1.42106 * 106.40221 * 178.54392 * 7 6 5 10 10 C 1.76202 * 107.21772 * 65.00488 * 7 6 5 11 11 C 1.38658 * 119.87646 * 269.72565 * 10 7 6 12 12 C 1.38614 * 120.50182 * 180.27783 * 11 10 7 13 13 C 1.37641 * 120.24858 * 359.97438 * 12 11 10 14 14 C 1.40699 * 119.74563 * 0.02562 * 13 12 11 15 15 C 1.41391 * 120.24662 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99913 * 147.92601 * 15 14 13 17 17 C 1.39943 * 119.99773 * 327.92844 * 15 14 13 18 18 N 1.30828 * 120.00220 * 168.07405 * 17 15 14 19 19 Si 1.86804 * 119.99917 * 348.07040 * 17 15 14 20 20 H 1.48503 * 109.47105 * 88.77846 * 19 17 15 21 21 H 1.48501 * 109.46899 * 208.77379 * 19 17 15 22 22 H 1.48493 * 109.47372 * 328.77431 * 19 17 15 23 23 C 1.37605 * 119.87510 * 89.99457 * 10 7 6 24 24 C 1.53006 * 109.47011 * 104.75490 * 3 2 1 25 25 C 1.52999 * 109.47501 * 293.83720 * 24 3 2 26 26 C 1.52998 * 109.46785 * 53.83900 * 24 3 2 27 27 H 1.09001 * 109.47313 * 185.37812 * 1 2 3 28 28 H 1.09005 * 109.46861 * 305.37730 * 1 2 3 29 29 H 1.08998 * 109.47560 * 65.37448 * 1 2 3 30 30 H 1.09000 * 109.46820 * 301.93380 * 5 3 2 31 31 H 1.08996 * 109.47434 * 181.93858 * 5 3 2 32 32 H 0.97000 * 119.99770 * 343.25279 * 6 5 3 33 33 H 1.08000 * 119.74813 * 0.27247 * 11 10 7 34 34 H 1.08000 * 119.87395 * 179.97438 * 12 11 10 35 35 H 1.07998 * 120.12521 * 179.97438 * 13 12 11 36 36 H 0.97001 * 119.99748 * 179.97438 * 18 17 15 37 37 H 1.08001 * 120.12623 * 359.70454 * 23 10 7 38 38 H 1.09006 * 109.46606 * 173.83647 * 24 3 2 39 39 H 1.08996 * 109.46849 * 66.05927 * 25 24 3 40 40 H 1.08994 * 109.47097 * 186.05983 * 25 24 3 41 41 H 1.08999 * 109.46971 * 306.06200 * 25 24 3 42 42 H 1.08997 * 109.47277 * 59.99983 * 26 24 3 43 43 H 1.09002 * 109.46938 * 179.97438 * 26 24 3 44 44 H 1.09003 * 109.47357 * 299.99834 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.2523 2.0407 -0.2701 5 6 3.1534 1.3548 -1.0157 6 7 2.6256 1.0974 -2.3579 7 16 3.5264 1.4892 -3.6910 8 8 3.9812 2.8205 -3.4909 9 8 2.7641 1.0900 -4.8219 10 6 4.9603 0.4654 -3.6709 11 6 6.1096 0.8990 -3.0276 12 6 7.2468 0.1066 -3.0087 13 6 7.2463 -1.1219 -3.6294 14 6 6.0858 -1.5722 -4.2853 15 6 6.0733 -2.8326 -4.9259 16 1 5.1604 -3.4080 -4.9677 17 6 7.2440 -3.3343 -5.5057 18 7 7.3005 -4.5839 -5.8891 19 14 8.7259 -2.2198 -5.7323 20 1 9.5733 -2.2691 -4.5138 21 1 9.5157 -2.6785 -6.9033 22 1 8.2669 -0.8261 -5.9601 23 6 4.9372 -0.7590 -4.2983 24 6 2.5534 1.6218 1.3950 25 6 1.3905 1.7242 2.3840 26 6 3.5028 0.5067 1.8376 27 1 -0.3634 -1.0231 0.0963 28 1 -0.3633 0.5950 0.8380 29 1 -0.3634 0.4282 -0.9342 30 1 3.8949 0.5962 -0.7652 31 1 3.6190 2.3400 -0.9911 32 1 1.7485 0.6975 -2.4656 33 1 6.1189 1.8614 -2.5377 34 1 8.1366 0.4545 -2.5050 35 1 8.1335 -1.7375 -3.6138 36 1 8.1119 -4.9315 -6.2913 37 1 4.0408 -1.0950 -4.7984 38 1 3.0925 2.5689 1.3687 39 1 0.9178 0.7479 2.4911 40 1 1.7654 2.0546 3.3526 41 1 0.6600 2.4428 2.0127 42 1 4.3312 0.4338 1.1331 43 1 3.8900 0.7323 2.8312 44 1 2.9637 -0.4404 1.8638 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619488381.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:56 Heat of formation + Delta-G solvation = -137.530669 kcal Electronic energy + Delta-G solvation = -26441.964191 eV Core-core repulsion = 22677.776888 eV Total energy + Delta-G solvation = -3764.187303 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.01754 -39.71000 -38.30708 -36.95362 -36.02119 -35.61934 -35.22187 -32.56057 -31.91416 -29.65500 -27.93733 -27.25865 -26.99408 -24.16345 -23.93269 -22.68985 -21.19796 -20.54915 -19.65634 -18.57419 -18.11418 -17.63153 -17.53546 -17.02400 -16.65207 -16.52050 -16.21083 -15.62242 -15.20237 -14.90575 -14.78980 -14.70872 -14.57930 -14.13552 -13.99492 -13.80635 -13.56769 -13.45091 -13.31843 -13.20895 -13.09797 -12.91772 -12.83875 -12.57944 -12.55365 -12.21607 -12.07550 -12.01268 -11.77017 -11.65568 -11.58227 -11.50832 -11.04516 -10.47265 -10.31649 -10.00807 -9.68425 -8.93855 -6.62049 -0.55932 0.15732 0.64115 1.19488 1.34666 1.41885 2.01698 2.07046 2.42080 2.73595 2.87303 3.27423 3.40227 3.77258 3.89547 4.02390 4.16385 4.25506 4.31103 4.41488 4.44795 4.48824 4.58522 4.64902 4.70534 4.73816 4.74489 4.82799 4.90910 4.92452 5.04251 5.06952 5.08198 5.12760 5.28622 5.32703 5.41268 5.47098 5.55776 5.60028 5.74884 5.97901 6.04922 6.23106 6.33762 6.56490 6.68898 8.14818 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015700 B = 0.003644 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.969120 B = 7683.001797 C = 8036.262523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.394 6.394 3 C 0.088 3.912 4 H 0.086 0.914 5 C 0.103 3.897 6 N -1.102 6.102 7 S 2.719 3.281 8 O -0.977 6.977 9 O -0.996 6.996 10 C -0.635 4.635 11 C -0.136 4.136 12 C -0.096 4.096 13 C -0.206 4.206 14 C 0.054 3.946 15 C -0.485 4.485 16 H 0.059 0.941 17 C 0.045 3.955 18 N -0.851 5.851 19 Si 0.962 3.038 20 H -0.245 1.245 21 H -0.276 1.276 22 H -0.256 1.256 23 C -0.120 4.120 24 C -0.110 4.110 25 C -0.144 4.144 26 C -0.146 4.146 27 H 0.088 0.912 28 H 0.059 0.941 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.105 0.895 32 H 0.424 0.576 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.112 0.888 36 H 0.295 0.705 37 H 0.111 0.889 38 H 0.095 0.905 39 H 0.053 0.947 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.050 0.950 43 H 0.062 0.938 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.513 12.962 15.874 22.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.313 6.313 3 C 0.028 3.972 4 H 0.104 0.896 5 C -0.023 4.023 6 N -0.864 5.864 7 S 2.811 3.189 8 O -0.967 6.967 9 O -0.986 6.986 10 C -0.723 4.723 11 C -0.157 4.157 12 C -0.115 4.115 13 C -0.225 4.225 14 C 0.051 3.949 15 C -0.515 4.515 16 H 0.077 0.923 17 C -0.170 4.170 18 N -0.477 5.477 19 Si 0.785 3.215 20 H -0.170 1.170 21 H -0.203 1.203 22 H -0.180 1.180 23 C -0.141 4.141 24 C -0.129 4.129 25 C -0.202 4.202 26 C -0.203 4.203 27 H 0.106 0.894 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.123 0.877 32 H 0.260 0.740 33 H 0.165 0.835 34 H 0.164 0.836 35 H 0.130 0.870 36 H 0.106 0.894 37 H 0.129 0.871 38 H 0.114 0.886 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.081 0.919 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.356 13.242 15.148 21.786 hybrid contribution 0.386 -1.142 -0.413 1.274 sum -7.970 12.100 14.736 20.666 Atomic orbital electron populations 1.23077 0.80185 1.03533 1.00976 1.87962 1.20688 1.27674 1.94962 1.22453 0.94816 0.85726 0.94177 0.89560 1.21867 0.97444 1.02906 0.80095 1.55118 1.31069 1.80635 1.19579 1.00864 0.72790 0.73207 0.72078 1.93507 1.82435 1.34788 1.85968 1.93521 1.70759 1.84107 1.50213 1.30475 1.18974 1.11026 1.11832 1.20679 0.92100 1.00462 1.02435 1.21197 0.98754 0.93358 0.98146 1.21627 0.98966 0.99137 1.02784 1.17960 0.92846 0.92421 0.91710 1.19484 0.97466 1.01349 1.33157 0.92323 1.26813 1.01877 0.96073 0.92190 1.69671 1.30898 1.15221 1.31910 0.85596 0.77487 0.79712 0.78723 1.17001 1.20257 1.18021 1.20907 0.99469 0.92918 1.00834 1.21556 0.97719 1.00149 0.93510 1.21841 0.97509 1.01833 0.98992 1.21780 0.98833 0.98554 1.01169 0.89390 0.92287 0.93458 0.91039 0.87733 0.74032 0.83458 0.83563 0.86996 0.89423 0.87051 0.88635 0.92816 0.91630 0.91929 0.93109 0.91910 0.93110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.41 113.37 1.18 1.45 16 2 O -0.39 -7.97 8.83 -148.98 -1.32 -9.29 16 3 C 0.09 1.52 2.06 30.59 0.06 1.58 16 4 H 0.09 1.21 7.66 -2.38 -0.02 1.20 16 5 C 0.10 2.22 5.65 86.38 0.49 2.71 16 6 N -1.10 -28.16 5.95 -187.50 -1.11 -29.27 16 7 S 2.72 91.94 5.74 -56.49 -0.32 91.61 16 8 O -0.98 -34.24 16.71 -128.00 -2.14 -36.38 16 9 O -1.00 -39.96 17.27 -128.00 -2.21 -42.17 16 10 C -0.64 -25.32 5.94 22.22 0.13 -25.19 16 11 C -0.14 -4.99 9.53 22.46 0.21 -4.77 16 12 C -0.10 -3.63 10.02 22.22 0.22 -3.41 16 13 C -0.21 -9.31 7.12 22.73 0.16 -9.15 16 14 C 0.05 2.75 5.11 -21.29 -0.11 2.64 16 15 C -0.48 -27.36 9.60 23.46 0.23 -27.13 16 16 H 0.06 3.57 8.06 -2.91 -0.02 3.55 16 17 C 0.04 2.39 5.47 85.26 0.47 2.86 16 18 N -0.85 -46.69 13.93 21.83 0.30 -46.39 16 19 Si 0.96 42.00 24.44 68.60 1.68 43.67 16 20 H -0.25 -9.72 6.49 99.48 0.65 -9.08 16 21 H -0.28 -11.36 7.11 99.48 0.71 -10.66 16 22 H -0.26 -11.51 6.87 99.48 0.68 -10.83 16 23 C -0.12 -5.69 9.26 22.73 0.21 -5.48 16 24 C -0.11 -1.58 2.74 -10.79 -0.03 -1.61 16 25 C -0.14 -1.68 8.12 71.98 0.58 -1.10 16 26 C -0.15 -2.52 8.76 71.98 0.63 -1.88 16 27 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.06 0.65 6.50 -2.38 -0.02 0.64 16 29 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 1.69 6.69 -2.39 -0.02 1.67 16 31 H 0.10 1.96 7.72 -2.39 -0.02 1.94 16 32 H 0.42 9.59 8.40 -96.75 -0.81 8.78 16 33 H 0.15 4.38 7.60 -2.91 -0.02 4.36 16 34 H 0.15 4.30 8.06 -2.91 -0.02 4.28 16 35 H 0.11 4.94 4.39 -2.91 -0.01 4.93 16 36 H 0.30 14.52 8.30 -92.71 -0.77 13.75 16 37 H 0.11 5.28 7.61 -2.91 -0.02 5.26 16 38 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 39 H 0.05 0.70 7.08 -2.39 -0.02 0.68 16 40 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.05 0.96 6.65 -2.39 -0.02 0.94 16 43 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.05 1.01 7.53 -2.39 -0.02 1.00 16 Total: -1.00 -68.71 364.20 -0.57 -69.28 By element: Atomic # 1 Polarization: 27.31 SS G_CDS: 0.11 Total: 27.43 kcal Atomic # 6 Polarization: -72.93 SS G_CDS: 4.44 Total: -68.49 kcal Atomic # 7 Polarization: -74.85 SS G_CDS: -0.81 Total: -75.66 kcal Atomic # 8 Polarization: -82.17 SS G_CDS: -5.66 Total: -87.84 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 1.68 Total: 43.67 kcal Atomic # 16 Polarization: 91.94 SS G_CDS: -0.32 Total: 91.61 kcal Total: -68.71 -0.57 -69.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619488381.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.250 kcal (2) G-P(sol) polarization free energy of solvation -68.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds