Wall clock time and date at job start Tue Mar 31 2020 15:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47430 * 2 1 4 4 H 1.08996 * 109.46732 * 176.24243 * 3 2 1 5 5 C 1.52998 * 109.46851 * 56.23947 * 3 2 1 6 6 C 1.53006 * 109.47053 * 65.00161 * 5 3 2 7 7 O 1.42904 * 109.47119 * 179.97438 * 6 5 3 8 8 C 1.52998 * 109.47045 * 296.23930 * 3 2 1 9 9 N 1.46497 * 109.47061 * 296.04178 * 8 3 2 10 10 S 1.65601 * 119.99505 * 163.81260 * 9 8 3 11 11 O 1.42098 * 106.40285 * 178.54105 * 10 9 8 12 12 O 1.42098 * 106.40526 * 311.45848 * 10 9 8 13 13 C 1.76198 * 107.22051 * 65.00013 * 10 9 8 14 14 C 1.38659 * 119.87748 * 269.72483 * 13 10 9 15 15 C 1.38610 * 120.50011 * 179.72229 * 14 13 10 16 16 C 1.37638 * 120.25071 * 0.54780 * 15 14 13 17 17 C 1.40702 * 119.74497 * 359.73080 * 16 15 14 18 18 C 1.41390 * 120.24480 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99758 * 151.73428 * 18 17 16 20 20 C 1.39942 * 120.00076 * 331.72868 * 18 17 16 21 21 N 1.30819 * 120.00193 * 159.30313 * 20 18 17 22 22 Si 1.86805 * 119.99991 * 339.30646 * 20 18 17 23 23 H 1.48503 * 109.47095 * 94.44473 * 22 20 18 24 24 H 1.48497 * 109.47104 * 214.44176 * 22 20 18 25 25 H 1.48492 * 109.47231 * 334.44414 * 22 20 18 26 26 C 1.37601 * 119.87477 * 89.99650 * 13 10 9 27 27 H 1.09002 * 109.46559 * 58.97735 * 1 2 3 28 28 H 1.08991 * 109.47430 * 178.98014 * 1 2 3 29 29 H 1.09001 * 109.46934 * 298.98314 * 1 2 3 30 30 H 1.09001 * 109.47157 * 239.99958 * 2 1 3 31 31 H 1.09001 * 109.46889 * 120.00287 * 2 1 3 32 32 H 1.09003 * 109.47019 * 184.99504 * 5 3 2 33 33 H 1.08997 * 109.47214 * 305.00055 * 5 3 2 34 34 H 1.08997 * 109.47330 * 299.99780 * 6 5 3 35 35 H 1.08997 * 109.47197 * 59.99884 * 6 5 3 36 36 H 0.96695 * 114.00164 * 179.97438 * 7 6 5 37 37 H 1.09001 * 109.46909 * 56.04687 * 8 3 2 38 38 H 1.08999 * 109.47127 * 176.03584 * 8 3 2 39 39 H 0.96995 * 120.00194 * 343.81448 * 9 8 3 40 40 H 1.08001 * 119.74542 * 0.02562 * 14 13 10 41 41 H 1.08003 * 119.87491 * 180.25946 * 15 14 13 42 42 H 1.07999 * 120.12868 * 179.70680 * 16 15 14 43 43 H 0.97003 * 120.00347 * 179.97438 * 21 20 18 44 44 H 1.08000 * 120.12839 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1280 1.4431 0.0673 5 6 1.4543 2.1905 1.1993 6 6 1.9858 1.5732 2.4945 7 8 1.4391 2.2722 3.6146 8 6 1.6089 2.1359 -1.2938 9 7 2.2458 1.4769 -2.4367 10 16 1.6710 1.7365 -3.9679 11 8 2.5104 0.9953 -4.8427 12 8 0.2629 1.5562 -3.9040 13 6 1.9382 3.4369 -4.3442 14 6 0.9595 4.3726 -4.0453 15 6 1.1585 5.7144 -4.3304 16 6 2.3279 6.1309 -4.9248 17 6 3.3257 5.1896 -5.2379 18 6 4.5313 5.6059 -5.8481 19 1 5.4400 5.0452 -5.6865 20 6 4.5470 6.7446 -6.6615 21 7 5.6741 7.3662 -6.8950 22 14 2.9584 7.3769 -7.4139 23 1 2.3810 8.4292 -6.5395 24 1 3.2390 7.9475 -8.7559 25 1 1.9923 6.2568 -7.5444 26 6 3.1151 3.8307 -4.9386 27 1 -0.3632 0.5297 -0.8807 28 1 -0.3634 -1.0274 -0.0183 29 1 -0.3633 0.4980 0.8990 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.7457 3.2397 1.1506 33 1 0.3672 2.1139 1.1796 34 1 1.6945 0.5240 2.5432 35 1 3.0729 1.6498 2.5142 36 1 1.7332 1.9336 4.4713 37 1 0.5254 2.0735 -1.3958 38 1 1.9110 3.1827 -1.2632 39 1 3.0041 0.8886 -2.2966 40 1 0.0372 4.0541 -3.5823 41 1 0.3911 6.4351 -4.0894 42 1 2.4790 7.1763 -5.1504 43 1 5.6851 8.1552 -7.4592 44 1 3.8744 3.0997 -5.1742 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619490197.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:06 Heat of formation + Delta-G solvation = -127.772379 kcal Electronic energy + Delta-G solvation = -26036.473358 eV Core-core repulsion = 22272.709207 eV Total energy + Delta-G solvation = -3763.764151 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -38.67174 -37.92290 -36.82417 -36.57030 -35.40206 -33.82678 -33.61507 -30.74436 -30.53231 -30.16930 -27.50441 -25.41627 -24.46927 -22.92488 -22.39524 -20.92637 -19.59341 -19.12763 -18.09062 -17.67437 -16.90696 -16.35966 -16.22254 -16.01437 -15.51891 -15.13501 -14.89380 -14.58672 -14.14980 -14.00093 -13.81663 -13.19272 -12.90222 -12.89502 -12.81242 -12.62521 -12.23726 -11.97118 -11.89557 -11.71505 -11.70094 -11.63599 -11.48356 -11.41374 -11.08398 -10.89925 -10.78906 -10.76916 -10.58904 -10.36886 -10.13324 -10.04696 -9.78090 -9.40934 -9.15559 -8.30025 -7.90892 -7.13109 -4.66025 0.89981 1.90026 2.40239 2.97796 3.09841 3.19034 3.41804 3.83163 3.92792 4.09098 4.29638 4.53128 4.59624 4.77938 4.90376 4.93753 5.06576 5.13775 5.17084 5.28850 5.40221 5.41692 5.52068 5.61678 5.68042 5.80221 5.82873 5.96126 5.98716 6.00672 6.08944 6.10663 6.20179 6.32175 6.44747 6.56743 6.84116 7.03262 7.14494 7.18457 7.33170 7.38610 7.60134 7.76040 8.15354 8.40919 8.58897 9.88525 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.016335 B = 0.003313 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.708438 B = 8450.505190 C = 9181.113914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.123 4.123 3 C -0.091 4.091 4 H 0.080 0.920 5 C -0.120 4.120 6 C 0.076 3.924 7 O -0.576 6.576 8 C 0.121 3.879 9 N -1.119 6.119 10 S 2.690 3.310 11 O -0.970 6.970 12 O -0.971 6.971 13 C -0.624 4.624 14 C -0.161 4.161 15 C -0.091 4.091 16 C -0.201 4.201 17 C 0.074 3.926 18 C -0.443 4.443 19 H 0.095 0.905 20 C 0.085 3.915 21 N -0.796 5.796 22 Si 0.907 3.093 23 H -0.267 1.267 24 H -0.286 1.286 25 H -0.244 1.244 26 C -0.104 4.104 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.048 0.952 35 H 0.044 0.956 36 H 0.378 0.622 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.414 0.586 40 H 0.111 0.889 41 H 0.103 0.897 42 H 0.107 0.893 43 H 0.288 0.712 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.917 -9.559 15.201 18.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.160 4.160 3 C -0.111 4.111 4 H 0.099 0.901 5 C -0.158 4.158 6 C -0.002 4.002 7 O -0.381 6.381 8 C -0.005 4.005 9 N -0.877 5.877 10 S 2.785 3.215 11 O -0.960 6.960 12 O -0.961 6.961 13 C -0.715 4.715 14 C -0.182 4.182 15 C -0.110 4.110 16 C -0.221 4.221 17 C 0.069 3.931 18 C -0.471 4.471 19 H 0.113 0.887 20 C -0.136 4.136 21 N -0.419 5.419 22 Si 0.732 3.268 23 H -0.193 1.193 24 H -0.213 1.213 25 H -0.167 1.167 26 C -0.125 4.125 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.224 0.776 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.248 0.752 40 H 0.129 0.871 41 H 0.121 0.879 42 H 0.124 0.876 43 H 0.099 0.901 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.542 -9.569 14.030 18.199 hybrid contribution 0.444 0.698 0.183 0.847 sum -6.098 -8.871 14.212 17.829 Atomic orbital electron populations 1.21957 0.95642 1.01837 1.02633 1.21598 0.96674 0.95724 1.02020 1.21293 1.00946 0.95393 0.93463 0.90125 1.21573 1.02158 1.00411 0.91664 1.22236 0.96667 0.94996 0.86301 1.86484 1.73573 1.61338 1.16724 1.21342 0.98211 0.96311 0.84640 1.55527 1.47384 1.61366 1.23451 1.01666 0.73324 0.74667 0.71835 1.93555 1.68710 1.70923 1.62831 1.93518 1.30586 1.86022 1.85993 1.29946 1.03849 1.22303 1.15445 1.20055 0.97734 0.92913 1.07485 1.20704 0.96558 0.95136 0.98596 1.21322 0.96595 0.98503 1.05666 1.17777 0.92578 0.90965 0.91731 1.19521 0.95454 1.07854 1.24254 0.88684 1.26171 0.98182 0.94277 0.94929 1.69694 1.28650 1.15059 1.28533 0.86385 0.82191 0.80413 0.77770 1.19328 1.21283 1.16727 1.20829 0.94823 0.96082 1.00760 0.91535 0.92892 0.92314 0.91404 0.91978 0.90682 0.90224 0.93410 0.93725 0.77562 0.89881 0.91149 0.75239 0.87075 0.87921 0.87559 0.90123 0.86316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 9.20 37.16 0.34 -1.14 16 2 C -0.12 -1.03 5.29 -26.73 -0.14 -1.17 16 3 C -0.09 -0.81 2.20 -90.62 -0.20 -1.01 16 4 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 5 C -0.12 -1.06 4.75 -26.73 -0.13 -1.19 16 6 C 0.08 0.58 6.80 37.16 0.25 0.83 16 7 O -0.58 -4.99 13.66 -35.23 -0.48 -5.47 16 8 C 0.12 1.39 5.46 -4.04 -0.02 1.37 16 9 N -1.12 -14.35 5.44 -10.62 -0.06 -14.41 16 10 S 2.69 46.95 5.73 -107.50 -0.62 46.33 16 11 O -0.97 -19.39 17.27 -57.18 -0.99 -20.38 16 12 O -0.97 -18.44 16.72 -57.18 -0.96 -19.40 16 13 C -0.62 -12.75 5.94 -39.66 -0.24 -12.99 16 14 C -0.16 -3.23 9.53 -39.29 -0.37 -3.60 16 15 C -0.09 -1.88 10.02 -39.66 -0.40 -2.28 16 16 C -0.20 -4.66 7.30 -38.87 -0.28 -4.95 16 17 C 0.07 1.81 5.12 -106.82 -0.55 1.26 16 18 C -0.44 -11.58 9.56 -37.75 -0.36 -11.94 16 19 H 0.10 2.57 8.06 -52.49 -0.42 2.15 16 20 C 0.08 2.15 5.38 -17.35 -0.09 2.06 16 21 N -0.80 -20.45 13.93 55.55 0.77 -19.67 16 22 Si 0.91 20.09 24.57 -169.99 -4.18 15.91 16 23 H -0.27 -5.67 6.62 56.52 0.37 -5.29 16 24 H -0.29 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.24 -5.61 6.99 56.52 0.40 -5.22 16 26 C -0.10 -2.37 9.26 -38.87 -0.36 -2.73 16 27 H 0.07 0.70 6.39 -51.93 -0.33 0.37 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.49 6.31 -51.93 -0.33 0.16 16 30 H 0.07 0.59 7.40 -51.93 -0.38 0.21 16 31 H 0.06 0.43 6.75 -51.93 -0.35 0.08 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.73 6.10 -51.93 -0.32 0.41 16 34 H 0.05 0.32 6.65 -51.93 -0.35 -0.03 16 35 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.38 1.53 9.12 45.56 0.42 1.95 16 37 H 0.08 0.97 5.91 -51.93 -0.31 0.67 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.41 4.35 8.36 -34.47 -0.29 4.07 16 40 H 0.11 1.98 7.59 -52.49 -0.40 1.58 16 41 H 0.10 1.81 8.06 -52.48 -0.42 1.39 16 42 H 0.11 2.42 4.67 -52.49 -0.25 2.18 16 43 H 0.29 6.67 8.30 -40.82 -0.34 6.33 16 44 H 0.12 2.60 7.60 -52.49 -0.40 2.20 16 LS Contribution 361.83 15.07 5.45 5.45 Total: -1.00 -31.75 361.83 -9.00 -40.76 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -5.41 Total: 8.34 kcal Atomic # 6 Polarization: -34.92 SS G_CDS: -2.55 Total: -37.46 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: 0.72 Total: -34.08 kcal Atomic # 8 Polarization: -42.82 SS G_CDS: -2.42 Total: -45.25 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.18 Total: 15.91 kcal Atomic # 16 Polarization: 46.95 SS G_CDS: -0.62 Total: 46.33 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.75 -9.00 -40.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619490197.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.017 kcal (2) G-P(sol) polarization free energy of solvation -31.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds