Wall clock time and date at job start Tue Mar 31 2020 15:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47430 * 2 1 4 4 H 1.08996 * 109.46732 * 176.24243 * 3 2 1 5 5 C 1.52998 * 109.46851 * 56.23947 * 3 2 1 6 6 C 1.53006 * 109.47053 * 65.00161 * 5 3 2 7 7 O 1.42904 * 109.47119 * 179.97438 * 6 5 3 8 8 C 1.52998 * 109.47045 * 296.23930 * 3 2 1 9 9 N 1.46497 * 109.47061 * 296.04178 * 8 3 2 10 10 S 1.65601 * 119.99505 * 163.81260 * 9 8 3 11 11 O 1.42098 * 106.40285 * 178.54105 * 10 9 8 12 12 O 1.42098 * 106.40526 * 311.45848 * 10 9 8 13 13 C 1.76198 * 107.22051 * 65.00013 * 10 9 8 14 14 C 1.38659 * 119.87748 * 269.72483 * 13 10 9 15 15 C 1.38610 * 120.50011 * 179.72229 * 14 13 10 16 16 C 1.37638 * 120.25071 * 0.54780 * 15 14 13 17 17 C 1.40702 * 119.74497 * 359.73080 * 16 15 14 18 18 C 1.41390 * 120.24480 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99758 * 151.73428 * 18 17 16 20 20 C 1.39942 * 120.00076 * 331.72868 * 18 17 16 21 21 N 1.30819 * 120.00193 * 159.30313 * 20 18 17 22 22 Si 1.86805 * 119.99991 * 339.30646 * 20 18 17 23 23 H 1.48503 * 109.47095 * 94.44473 * 22 20 18 24 24 H 1.48497 * 109.47104 * 214.44176 * 22 20 18 25 25 H 1.48492 * 109.47231 * 334.44414 * 22 20 18 26 26 C 1.37601 * 119.87477 * 89.99650 * 13 10 9 27 27 H 1.09002 * 109.46559 * 58.97735 * 1 2 3 28 28 H 1.08991 * 109.47430 * 178.98014 * 1 2 3 29 29 H 1.09001 * 109.46934 * 298.98314 * 1 2 3 30 30 H 1.09001 * 109.47157 * 239.99958 * 2 1 3 31 31 H 1.09001 * 109.46889 * 120.00287 * 2 1 3 32 32 H 1.09003 * 109.47019 * 184.99504 * 5 3 2 33 33 H 1.08997 * 109.47214 * 305.00055 * 5 3 2 34 34 H 1.08997 * 109.47330 * 299.99780 * 6 5 3 35 35 H 1.08997 * 109.47197 * 59.99884 * 6 5 3 36 36 H 0.96695 * 114.00164 * 179.97438 * 7 6 5 37 37 H 1.09001 * 109.46909 * 56.04687 * 8 3 2 38 38 H 1.08999 * 109.47127 * 176.03584 * 8 3 2 39 39 H 0.96995 * 120.00194 * 343.81448 * 9 8 3 40 40 H 1.08001 * 119.74542 * 0.02562 * 14 13 10 41 41 H 1.08003 * 119.87491 * 180.25946 * 15 14 13 42 42 H 1.07999 * 120.12868 * 179.70680 * 16 15 14 43 43 H 0.97003 * 120.00347 * 179.97438 * 21 20 18 44 44 H 1.08000 * 120.12839 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1280 1.4431 0.0673 5 6 1.4543 2.1905 1.1993 6 6 1.9858 1.5732 2.4945 7 8 1.4391 2.2722 3.6146 8 6 1.6089 2.1359 -1.2938 9 7 2.2458 1.4769 -2.4367 10 16 1.6710 1.7365 -3.9679 11 8 2.5104 0.9953 -4.8427 12 8 0.2629 1.5562 -3.9040 13 6 1.9382 3.4369 -4.3442 14 6 0.9595 4.3726 -4.0453 15 6 1.1585 5.7144 -4.3304 16 6 2.3279 6.1309 -4.9248 17 6 3.3257 5.1896 -5.2379 18 6 4.5313 5.6059 -5.8481 19 1 5.4400 5.0452 -5.6865 20 6 4.5470 6.7446 -6.6615 21 7 5.6741 7.3662 -6.8950 22 14 2.9584 7.3769 -7.4139 23 1 2.3810 8.4292 -6.5395 24 1 3.2390 7.9475 -8.7559 25 1 1.9923 6.2568 -7.5444 26 6 3.1151 3.8307 -4.9386 27 1 -0.3632 0.5297 -0.8807 28 1 -0.3634 -1.0274 -0.0183 29 1 -0.3633 0.4980 0.8990 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.7457 3.2397 1.1506 33 1 0.3672 2.1139 1.1796 34 1 1.6945 0.5240 2.5432 35 1 3.0729 1.6498 2.5142 36 1 1.7332 1.9336 4.4713 37 1 0.5254 2.0735 -1.3958 38 1 1.9110 3.1827 -1.2632 39 1 3.0041 0.8886 -2.2966 40 1 0.0372 4.0541 -3.5823 41 1 0.3911 6.4351 -4.0894 42 1 2.4790 7.1763 -5.1504 43 1 5.6851 8.1552 -7.4592 44 1 3.8744 3.0997 -5.1742 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619490197.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:05 Heat of formation + Delta-G solvation = -152.501842 kcal Electronic energy + Delta-G solvation = -26037.545708 eV Core-core repulsion = 22272.709207 eV Total energy + Delta-G solvation = -3764.836501 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.68416 -39.40834 -38.26557 -37.31599 -36.92311 -35.66620 -34.59004 -32.54516 -31.88595 -31.19295 -28.32644 -27.25557 -25.23964 -24.09333 -23.62982 -22.68624 -20.76242 -20.17585 -19.66535 -18.60761 -18.10107 -17.96387 -17.27982 -17.06594 -16.84388 -16.63882 -16.13432 -15.92896 -15.46896 -14.86350 -14.83480 -14.69849 -14.65033 -14.05646 -13.78048 -13.65309 -13.59507 -13.49894 -13.37123 -13.17916 -13.07567 -12.91364 -12.71489 -12.56952 -12.53442 -12.20070 -12.06109 -11.82009 -11.62983 -11.51150 -11.44407 -11.29258 -11.06565 -10.70906 -10.39163 -10.01597 -9.70731 -9.00312 -6.60211 -0.53461 0.18168 0.64301 1.19731 1.34809 1.41762 2.01938 2.09492 2.40259 2.75127 3.28470 3.31789 3.50173 3.78953 3.89420 4.14625 4.17926 4.30027 4.33616 4.40686 4.44403 4.51481 4.58276 4.60145 4.70862 4.74329 4.75715 4.83453 4.88647 4.94136 5.05539 5.13247 5.17954 5.28271 5.33584 5.39832 5.41598 5.43415 5.61604 5.63164 5.75281 5.98229 6.13141 6.23050 6.57394 6.68219 6.96412 8.07732 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.016335 B = 0.003313 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.708438 B = 8450.505190 C = 9181.113914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.123 4.123 3 C -0.082 4.082 4 H 0.092 0.908 5 C -0.120 4.120 6 C 0.076 3.924 7 O -0.599 6.599 8 C 0.111 3.889 9 N -1.101 6.101 10 S 2.718 3.282 11 O -0.995 6.995 12 O -0.980 6.980 13 C -0.632 4.632 14 C -0.145 4.145 15 C -0.094 4.094 16 C -0.210 4.210 17 C 0.055 3.945 18 C -0.484 4.484 19 H 0.063 0.937 20 C 0.052 3.948 21 N -0.836 5.836 22 Si 0.955 3.045 23 H -0.247 1.247 24 H -0.272 1.272 25 H -0.258 1.258 26 C -0.124 4.124 27 H 0.048 0.952 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.396 0.604 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.427 0.573 40 H 0.142 0.858 41 H 0.142 0.858 42 H 0.109 0.891 43 H 0.297 0.703 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.194 -10.185 17.097 21.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.161 4.161 3 C -0.102 4.102 4 H 0.110 0.890 5 C -0.158 4.158 6 C -0.002 4.002 7 O -0.407 6.407 8 C -0.014 4.014 9 N -0.864 5.864 10 S 2.810 3.190 11 O -0.986 6.986 12 O -0.970 6.970 13 C -0.720 4.720 14 C -0.166 4.166 15 C -0.113 4.113 16 C -0.229 4.229 17 C 0.052 3.948 18 C -0.513 4.513 19 H 0.081 0.919 20 C -0.165 4.165 21 N -0.462 5.462 22 Si 0.778 3.222 23 H -0.172 1.172 24 H -0.199 1.199 25 H -0.182 1.182 26 C -0.145 4.145 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.246 0.754 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.264 0.736 40 H 0.160 0.840 41 H 0.160 0.840 42 H 0.127 0.873 43 H 0.108 0.892 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.800 -10.170 15.934 20.851 hybrid contribution 1.014 0.723 -0.190 1.260 sum -7.786 -9.447 15.744 19.943 Atomic orbital electron populations 1.21966 0.96166 1.01999 1.02091 1.21633 0.96199 0.95336 1.02905 1.21230 1.01642 0.95454 0.91916 0.88961 1.21548 1.01944 0.99911 0.92405 1.22246 0.97055 0.95403 0.85461 1.86428 1.74103 1.62141 1.18060 1.21589 0.98252 0.96493 0.85113 1.55143 1.47935 1.61247 1.22081 1.00854 0.72774 0.73012 0.72371 1.93520 1.69305 1.70952 1.64800 1.93506 1.31303 1.85574 1.86597 1.30472 1.02765 1.24632 1.14170 1.20599 0.98238 0.92718 1.05028 1.21162 0.96487 0.96360 0.97305 1.21515 0.97111 0.98452 1.05825 1.17939 0.92659 0.92173 0.92058 1.19496 0.95316 1.09232 1.27239 0.91928 1.26786 1.00770 0.94152 0.94770 1.69712 1.30135 1.16199 1.30107 0.85653 0.78681 0.79859 0.78025 1.17223 1.19853 1.18224 1.20876 0.96038 0.95552 1.02059 0.93296 0.92378 0.91678 0.91685 0.89971 0.91749 0.90646 0.92006 0.92873 0.75406 0.89829 0.91365 0.73599 0.83991 0.83981 0.87345 0.89225 0.86801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.59 9.20 71.98 0.66 -1.93 16 2 C -0.12 -1.71 5.29 30.60 0.16 -1.55 16 3 C -0.08 -1.25 2.20 -10.79 -0.02 -1.27 16 4 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 5 C -0.12 -1.85 4.75 30.60 0.15 -1.71 16 6 C 0.08 0.96 6.80 71.98 0.49 1.45 16 7 O -0.60 -9.04 13.66 -148.98 -2.04 -11.08 16 8 C 0.11 2.29 5.46 86.38 0.47 2.77 16 9 N -1.10 -26.10 5.44 -187.50 -1.02 -27.12 16 10 S 2.72 90.63 5.73 -56.49 -0.32 90.31 16 11 O -1.00 -39.12 17.27 -128.00 -2.21 -41.33 16 12 O -0.98 -34.89 16.72 -128.00 -2.14 -37.03 16 13 C -0.63 -25.02 5.94 22.22 0.13 -24.89 16 14 C -0.15 -5.41 9.53 22.46 0.21 -5.19 16 15 C -0.09 -3.63 10.02 22.22 0.22 -3.41 16 16 C -0.21 -9.50 7.30 22.73 0.17 -9.33 16 17 C 0.06 2.77 5.12 -21.29 -0.11 2.66 16 18 C -0.48 -26.69 9.56 23.46 0.22 -26.46 16 19 H 0.06 3.69 8.06 -2.91 -0.02 3.67 16 20 C 0.05 2.70 5.38 85.26 0.46 3.16 16 21 N -0.84 -44.61 13.93 21.83 0.30 -44.31 16 22 Si 0.96 41.32 24.57 68.60 1.69 43.01 16 23 H -0.25 -9.81 6.62 99.48 0.66 -9.15 16 24 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 25 H -0.26 -11.63 6.99 99.48 0.70 -10.94 16 26 C -0.12 -5.76 9.26 22.73 0.21 -5.55 16 27 H 0.05 0.94 6.39 -2.39 -0.02 0.92 16 28 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.06 0.93 6.31 -2.39 -0.02 0.91 16 30 H 0.06 0.95 7.40 -2.39 -0.02 0.94 16 31 H 0.08 0.84 6.75 -2.39 -0.02 0.83 16 32 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.07 1.22 6.10 -2.39 -0.01 1.21 16 34 H 0.06 0.61 6.65 -2.39 -0.02 0.59 16 35 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.40 2.31 9.12 -74.06 -0.68 1.64 16 37 H 0.08 1.76 5.91 -2.39 -0.01 1.74 16 38 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.43 8.10 8.36 -96.75 -0.81 7.30 16 40 H 0.14 4.43 7.59 -2.91 -0.02 4.41 16 41 H 0.14 4.34 8.06 -2.91 -0.02 4.31 16 42 H 0.11 4.81 4.67 -2.91 -0.01 4.80 16 43 H 0.30 14.13 8.30 -92.71 -0.77 13.36 16 44 H 0.11 5.23 7.60 -2.91 -0.02 5.20 16 Total: -1.00 -69.47 361.83 -2.81 -72.29 By element: Atomic # 1 Polarization: 27.02 SS G_CDS: -0.50 Total: 26.51 kcal Atomic # 6 Polarization: -74.68 SS G_CDS: 3.43 Total: -71.26 kcal Atomic # 7 Polarization: -70.71 SS G_CDS: -0.72 Total: -71.42 kcal Atomic # 8 Polarization: -83.06 SS G_CDS: -6.38 Total: -89.44 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 1.69 Total: 43.01 kcal Atomic # 16 Polarization: 90.63 SS G_CDS: -0.32 Total: 90.31 kcal Total: -69.47 -2.81 -72.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619490197.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.213 kcal (2) G-P(sol) polarization free energy of solvation -69.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds