Wall clock time and date at job start Tue Mar 31 2020 15:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99667 * 2 1 4 4 C 1.53004 * 109.47144 * 60.00314 * 3 2 1 5 5 C 1.52998 * 109.47323 * 299.99958 * 3 2 1 6 6 C 1.53005 * 109.47113 * 179.97438 * 3 2 1 7 7 N 1.46497 * 109.46914 * 57.74381 * 6 3 2 8 8 C 1.46503 * 120.00088 * 84.45829 * 7 6 3 9 9 S 1.65603 * 120.00377 * 264.45677 * 7 6 3 10 10 O 1.42101 * 106.40460 * 160.22733 * 9 7 6 11 11 O 1.42099 * 106.39653 * 27.31073 * 9 7 6 12 12 C 1.76195 * 107.21788 * 273.77136 * 9 7 6 13 13 C 1.38657 * 119.87675 * 275.31579 * 12 9 7 14 14 C 1.38614 * 120.50372 * 180.25729 * 13 12 9 15 15 C 1.37637 * 120.24473 * 359.44719 * 14 13 12 16 16 C 1.40700 * 119.74513 * 0.27691 * 15 14 13 17 17 C 1.41398 * 120.24391 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00362 * 208.62072 * 17 16 15 19 19 C 1.39950 * 119.99811 * 28.62133 * 17 16 15 20 20 N 1.30820 * 119.99903 * 9.73107 * 19 17 16 21 21 Si 1.86802 * 119.99835 * 189.72659 * 19 17 16 22 22 H 1.48491 * 109.47021 * 94.99733 * 21 19 17 23 23 H 1.48507 * 109.46951 * 214.99702 * 21 19 17 24 24 H 1.48496 * 109.47102 * 334.99849 * 21 19 17 25 25 C 1.37598 * 119.87598 * 95.02303 * 12 9 7 26 26 H 1.09007 * 109.46603 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47035 * 299.99633 * 1 2 3 28 28 H 1.08998 * 109.47491 * 60.00085 * 1 2 3 29 29 H 1.09004 * 109.46735 * 179.97438 * 4 3 2 30 30 H 1.09003 * 109.46737 * 299.99791 * 4 3 2 31 31 H 1.08995 * 109.47165 * 59.99691 * 4 3 2 32 32 H 1.09007 * 109.46964 * 307.63409 * 5 3 2 33 33 H 1.09003 * 109.47038 * 67.63257 * 5 3 2 34 34 H 1.08998 * 109.47361 * 187.63148 * 5 3 2 35 35 H 1.09002 * 109.47069 * 297.75024 * 6 3 2 36 36 H 1.08997 * 109.46859 * 177.74245 * 6 3 2 37 37 H 1.08999 * 109.47035 * 264.79548 * 8 7 6 38 38 H 1.08998 * 109.47069 * 24.79622 * 8 7 6 39 39 H 1.08994 * 109.47554 * 144.79551 * 8 7 6 40 40 H 1.08007 * 119.74802 * 0.02562 * 13 12 9 41 41 H 1.07998 * 119.87347 * 179.71878 * 14 13 12 42 42 H 1.08004 * 120.12664 * 180.24855 * 15 14 13 43 43 H 0.97010 * 119.99934 * 179.97438 * 20 19 17 44 44 H 1.07996 * 120.12954 * 0.04179 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5587 2.0647 1.2493 5 6 1.5587 2.0648 -1.2492 6 6 3.5354 1.1848 0.0006 7 7 3.9645 0.4112 -1.1671 8 6 4.1467 1.0762 -2.4597 9 16 4.2436 -1.2151 -1.0261 10 8 4.1795 -1.7488 -2.3415 11 8 3.4216 -1.6723 0.0391 12 6 5.9100 -1.4136 -0.4892 13 6 6.9392 -1.4174 -1.4183 14 6 8.2544 -1.5780 -1.0108 15 6 8.5534 -1.7243 0.3247 16 6 7.5177 -1.7163 1.2769 17 6 7.8129 -1.8663 2.6516 18 1 7.0860 -2.3118 3.3145 19 6 9.0470 -1.4375 3.1531 20 7 9.8489 -0.7296 2.3998 21 14 9.5493 -1.8757 4.8981 22 1 10.3840 -3.1036 4.8793 23 1 10.3289 -0.7561 5.4847 24 1 8.3343 -2.1156 5.7174 25 6 6.1856 -1.5583 0.8511 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 2.0024 3.0604 1.2495 30 1 0.4721 2.1507 1.2493 31 1 1.8803 1.5238 2.1392 32 1 1.7592 1.4605 -2.1340 33 1 0.4901 2.2695 -1.1836 34 1 2.1051 3.0053 -1.3201 35 1 3.8595 0.6793 0.9104 36 1 3.9786 2.1798 -0.0398 37 1 3.2386 0.9716 -3.0533 38 1 4.3554 2.1337 -2.2980 39 1 4.9818 0.6181 -2.9895 40 1 6.7141 -1.2980 -2.4679 41 1 9.0476 -1.5839 -1.7436 42 1 9.5792 -1.8453 0.6404 43 1 10.7042 -0.4321 2.7475 44 1 5.3829 -1.5510 1.5735 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619490947.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:52 Heat of formation + Delta-G solvation = -97.052833 kcal Electronic energy + Delta-G solvation = -27181.173497 eV Core-core repulsion = 23418.741445 eV Total energy + Delta-G solvation = -3762.432052 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.15734 -37.59274 -36.47796 -35.75064 -35.03657 -33.77127 -32.33490 -30.02064 -29.72292 -28.24323 -27.29249 -26.39639 -25.43611 -24.13475 -21.75033 -20.95296 -20.07718 -18.56472 -17.76088 -16.89776 -16.63775 -16.05458 -15.56167 -15.36102 -15.07412 -14.86835 -14.62314 -14.13876 -13.92756 -13.41136 -13.29453 -13.22520 -12.89782 -12.54420 -12.53117 -12.39209 -12.05272 -11.87224 -11.83624 -11.68003 -11.51210 -11.32356 -11.23732 -11.23291 -11.15037 -10.97509 -10.88603 -10.85162 -10.55374 -10.54276 -9.70023 -9.53189 -9.43193 -9.37468 -8.68447 -7.96959 -7.61579 -6.82707 -4.51985 1.14495 2.26541 2.66074 3.02715 3.06579 3.09304 3.54906 3.87079 3.91779 4.44014 4.53211 4.74738 4.82943 4.93888 5.10731 5.12257 5.35570 5.40060 5.43779 5.46267 5.49831 5.58808 5.64229 5.70585 5.76681 5.77977 5.87173 5.98413 6.05269 6.08396 6.12214 6.19634 6.34210 6.69644 6.74512 6.82136 7.00211 7.11333 7.27308 7.41338 7.42635 7.76131 7.87106 7.99115 8.45558 8.72493 8.76607 10.11787 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015585 B = 0.004104 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.169277 B = 6820.184294 C = 7693.873985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.351 6.351 3 C 0.087 3.913 4 C -0.177 4.177 5 C -0.179 4.179 6 C 0.142 3.858 7 N -0.996 5.996 8 C 0.096 3.904 9 S 2.689 3.311 10 O -0.978 6.978 11 O -0.944 6.944 12 C -0.641 4.641 13 C -0.143 4.143 14 C -0.125 4.125 15 C -0.112 4.112 16 C 0.089 3.911 17 C -0.461 4.461 18 H 0.082 0.918 19 C 0.072 3.928 20 N -0.806 5.806 21 Si 0.914 3.086 22 H -0.268 1.268 23 H -0.277 1.277 24 H -0.261 1.261 25 C -0.120 4.120 26 H 0.082 0.918 27 H 0.040 0.960 28 H 0.037 0.963 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.053 0.947 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.103 0.897 41 H 0.098 0.902 42 H 0.128 0.872 43 H 0.281 0.719 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.192 8.154 -4.250 14.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.269 6.269 3 C 0.046 3.954 4 C -0.235 4.235 5 C -0.236 4.236 6 C 0.016 3.984 7 N -0.831 5.831 8 C -0.049 4.049 9 S 2.784 3.216 10 O -0.969 6.969 11 O -0.934 6.934 12 C -0.732 4.732 13 C -0.164 4.164 14 C -0.145 4.145 15 C -0.132 4.132 16 C 0.086 3.914 17 C -0.491 4.491 18 H 0.100 0.900 19 C -0.144 4.144 20 N -0.432 5.432 21 Si 0.739 3.261 22 H -0.194 1.194 23 H -0.202 1.202 24 H -0.185 1.185 25 C -0.142 4.142 26 H 0.101 0.899 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.121 0.879 41 H 0.116 0.884 42 H 0.146 0.854 43 H 0.092 0.908 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.476 7.483 -4.430 14.399 hybrid contribution 0.894 0.490 0.945 1.390 sum -10.582 7.973 -3.486 13.700 Atomic orbital electron populations 1.22759 0.82584 1.02468 0.99394 1.88273 1.18411 1.25482 1.94761 1.22033 0.94737 0.84403 0.94263 1.22371 1.01727 1.00830 0.98572 1.22529 1.01181 1.00838 0.99054 1.21301 0.90817 0.97749 0.88510 1.57436 1.82446 1.28180 1.15076 1.21504 1.01245 0.98319 0.83866 1.01932 0.74542 0.71765 0.73371 1.93487 1.87758 1.76371 1.39261 1.93566 1.65910 1.77842 1.56101 1.30058 1.21336 1.19143 1.02618 1.20089 0.92611 1.07363 0.96296 1.20842 0.95082 1.02343 0.96206 1.21725 1.00508 0.99748 0.91174 1.17723 0.90509 0.89436 0.93747 1.19622 1.00263 1.35608 0.93622 0.90029 1.25903 0.95655 0.92650 1.00208 1.69743 1.09404 1.26338 1.37742 0.86187 0.79487 0.78922 0.81508 1.19361 1.20213 1.18453 1.20877 0.97609 1.03510 0.92157 0.89916 0.94147 0.94479 0.91484 0.92089 0.91136 0.91025 0.92662 0.91620 0.88950 0.89154 0.92802 0.91205 0.91261 0.87936 0.88423 0.85410 0.90793 0.86853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.22 101.05 1.03 1.32 16 2 O -0.35 -5.42 8.10 -55.26 -0.45 -5.87 16 3 C 0.09 1.09 0.89 -90.62 -0.08 1.01 16 4 C -0.18 -1.81 8.25 37.16 0.31 -1.50 16 5 C -0.18 -1.81 7.14 37.16 0.27 -1.54 16 6 C 0.14 1.96 4.71 -4.04 -0.02 1.94 16 7 N -1.00 -15.53 2.92 -121.76 -0.36 -15.89 16 8 C 0.10 1.21 8.88 59.85 0.53 1.74 16 9 S 2.69 53.79 5.49 -107.50 -0.59 53.20 16 10 O -0.98 -21.13 16.47 -57.17 -0.94 -22.07 16 11 O -0.94 -20.65 14.32 -65.56 -0.94 -21.59 16 12 C -0.64 -14.47 5.96 -39.66 -0.24 -14.71 16 13 C -0.14 -3.18 9.53 -39.29 -0.37 -3.55 16 14 C -0.13 -2.87 10.02 -39.66 -0.40 -3.27 16 15 C -0.11 -2.82 8.66 -38.87 -0.34 -3.16 16 16 C 0.09 2.34 5.56 -106.82 -0.59 1.74 16 17 C -0.46 -11.96 9.07 -37.74 -0.34 -12.30 16 18 H 0.08 2.04 7.86 -52.49 -0.41 1.63 16 19 C 0.07 1.76 5.27 -17.34 -0.09 1.67 16 20 N -0.81 -20.10 10.78 55.55 0.60 -19.50 16 21 Si 0.91 18.31 29.57 -169.99 -5.03 13.28 16 22 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 23 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 24 H -0.26 -5.19 7.11 56.52 0.40 -4.78 16 25 C -0.12 -2.94 9.27 -38.87 -0.36 -3.30 16 26 H 0.08 0.94 8.14 -51.92 -0.42 0.52 16 27 H 0.04 0.40 6.42 -51.93 -0.33 0.07 16 28 H 0.04 0.37 6.59 -51.93 -0.34 0.03 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.55 6.54 -51.93 -0.34 0.21 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.79 5.70 -51.93 -0.30 0.50 16 33 H 0.05 0.49 6.96 -51.93 -0.36 0.13 16 34 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 35 H 0.09 1.41 7.70 -51.93 -0.40 1.01 16 36 H 0.09 0.98 7.95 -51.93 -0.41 0.57 16 37 H 0.05 0.62 6.51 -51.93 -0.34 0.28 16 38 H 0.07 0.67 7.89 -51.93 -0.41 0.26 16 39 H 0.07 0.90 7.89 -51.93 -0.41 0.49 16 40 H 0.10 2.05 7.73 -52.48 -0.41 1.65 16 41 H 0.10 1.95 8.06 -52.49 -0.42 1.52 16 42 H 0.13 3.29 6.17 -52.48 -0.32 2.96 16 43 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 44 H 0.11 2.67 7.50 -52.49 -0.39 2.28 16 LS Contribution 360.72 15.07 5.44 5.44 Total: -1.00 -31.48 360.72 -9.39 -40.87 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -6.43 Total: 6.06 kcal Atomic # 6 Polarization: -33.23 SS G_CDS: -0.70 Total: -33.92 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: 0.24 Total: -35.39 kcal Atomic # 8 Polarization: -47.21 SS G_CDS: -2.33 Total: -49.53 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.03 Total: 13.28 kcal Atomic # 16 Polarization: 53.79 SS G_CDS: -0.59 Total: 53.20 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.48 -9.39 -40.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619490947.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.184 kcal (2) G-P(sol) polarization free energy of solvation -31.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds