Wall clock time and date at job start Tue Mar 31 2020 15:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99667 * 2 1 4 4 C 1.53004 * 109.47144 * 60.00314 * 3 2 1 5 5 C 1.52998 * 109.47323 * 299.99958 * 3 2 1 6 6 C 1.53005 * 109.47113 * 179.97438 * 3 2 1 7 7 N 1.46497 * 109.46914 * 57.74381 * 6 3 2 8 8 C 1.46503 * 120.00088 * 84.45829 * 7 6 3 9 9 S 1.65603 * 120.00377 * 264.45677 * 7 6 3 10 10 O 1.42101 * 106.40460 * 160.22733 * 9 7 6 11 11 O 1.42099 * 106.39653 * 27.31073 * 9 7 6 12 12 C 1.76195 * 107.21788 * 273.77136 * 9 7 6 13 13 C 1.38657 * 119.87675 * 275.31579 * 12 9 7 14 14 C 1.38614 * 120.50372 * 180.25729 * 13 12 9 15 15 C 1.37637 * 120.24473 * 359.44719 * 14 13 12 16 16 C 1.40700 * 119.74513 * 0.27691 * 15 14 13 17 17 C 1.41398 * 120.24391 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00362 * 208.62072 * 17 16 15 19 19 C 1.39950 * 119.99811 * 28.62133 * 17 16 15 20 20 N 1.30820 * 119.99903 * 9.73107 * 19 17 16 21 21 Si 1.86802 * 119.99835 * 189.72659 * 19 17 16 22 22 H 1.48491 * 109.47021 * 94.99733 * 21 19 17 23 23 H 1.48507 * 109.46951 * 214.99702 * 21 19 17 24 24 H 1.48496 * 109.47102 * 334.99849 * 21 19 17 25 25 C 1.37598 * 119.87598 * 95.02303 * 12 9 7 26 26 H 1.09007 * 109.46603 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47035 * 299.99633 * 1 2 3 28 28 H 1.08998 * 109.47491 * 60.00085 * 1 2 3 29 29 H 1.09004 * 109.46735 * 179.97438 * 4 3 2 30 30 H 1.09003 * 109.46737 * 299.99791 * 4 3 2 31 31 H 1.08995 * 109.47165 * 59.99691 * 4 3 2 32 32 H 1.09007 * 109.46964 * 307.63409 * 5 3 2 33 33 H 1.09003 * 109.47038 * 67.63257 * 5 3 2 34 34 H 1.08998 * 109.47361 * 187.63148 * 5 3 2 35 35 H 1.09002 * 109.47069 * 297.75024 * 6 3 2 36 36 H 1.08997 * 109.46859 * 177.74245 * 6 3 2 37 37 H 1.08999 * 109.47035 * 264.79548 * 8 7 6 38 38 H 1.08998 * 109.47069 * 24.79622 * 8 7 6 39 39 H 1.08994 * 109.47554 * 144.79551 * 8 7 6 40 40 H 1.08007 * 119.74802 * 0.02562 * 13 12 9 41 41 H 1.07998 * 119.87347 * 179.71878 * 14 13 12 42 42 H 1.08004 * 120.12664 * 180.24855 * 15 14 13 43 43 H 0.97010 * 119.99934 * 179.97438 * 20 19 17 44 44 H 1.07996 * 120.12954 * 0.04179 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5587 2.0647 1.2493 5 6 1.5587 2.0648 -1.2492 6 6 3.5354 1.1848 0.0006 7 7 3.9645 0.4112 -1.1671 8 6 4.1467 1.0762 -2.4597 9 16 4.2436 -1.2151 -1.0261 10 8 4.1795 -1.7488 -2.3415 11 8 3.4216 -1.6723 0.0391 12 6 5.9100 -1.4136 -0.4892 13 6 6.9392 -1.4174 -1.4183 14 6 8.2544 -1.5780 -1.0108 15 6 8.5534 -1.7243 0.3247 16 6 7.5177 -1.7163 1.2769 17 6 7.8129 -1.8663 2.6516 18 1 7.0860 -2.3118 3.3145 19 6 9.0470 -1.4375 3.1531 20 7 9.8489 -0.7296 2.3998 21 14 9.5493 -1.8757 4.8981 22 1 10.3840 -3.1036 4.8793 23 1 10.3289 -0.7561 5.4847 24 1 8.3343 -2.1156 5.7174 25 6 6.1856 -1.5583 0.8511 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 2.0024 3.0604 1.2495 30 1 0.4721 2.1507 1.2493 31 1 1.8803 1.5238 2.1392 32 1 1.7592 1.4605 -2.1340 33 1 0.4901 2.2695 -1.1836 34 1 2.1051 3.0053 -1.3201 35 1 3.8595 0.6793 0.9104 36 1 3.9786 2.1798 -0.0398 37 1 3.2386 0.9716 -3.0533 38 1 4.3554 2.1337 -2.2980 39 1 4.9818 0.6181 -2.9895 40 1 6.7141 -1.2980 -2.4679 41 1 9.0476 -1.5839 -1.7436 42 1 9.5792 -1.8453 0.6404 43 1 10.7042 -0.4321 2.7475 44 1 5.3829 -1.5510 1.5735 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619490947.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:51 Heat of formation + Delta-G solvation = -116.798077 kcal Electronic energy + Delta-G solvation = -27182.029715 eV Core-core repulsion = 23418.741445 eV Total energy + Delta-G solvation = -3763.288270 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.12587 -39.44526 -38.13903 -36.88787 -36.70442 -35.63249 -33.29405 -31.89812 -31.56559 -29.17612 -28.09990 -27.37242 -27.29459 -25.25808 -23.56993 -22.80422 -21.02992 -20.21547 -19.32273 -18.36135 -17.79248 -17.70083 -17.04735 -16.67241 -16.47823 -16.28979 -15.95118 -15.50113 -15.13774 -15.01255 -14.87190 -14.33262 -14.29156 -13.83477 -13.68788 -13.53544 -13.30396 -13.21989 -13.10908 -12.98011 -12.90932 -12.82708 -12.75498 -12.70235 -12.62435 -12.49488 -12.26081 -12.17656 -12.01469 -11.53609 -11.50700 -11.29597 -11.18389 -10.36459 -9.95450 -9.75904 -9.51427 -8.66571 -6.47503 -0.42186 0.42414 0.83104 1.37951 1.45638 1.51493 2.15097 2.19229 2.61544 2.88769 3.00819 3.50528 3.52617 3.85855 3.93510 4.00476 4.18130 4.30330 4.40539 4.50682 4.54195 4.61748 4.64095 4.74211 4.75321 4.81811 4.84974 4.90583 4.90951 4.94815 4.99873 5.06471 5.08965 5.13463 5.21638 5.28350 5.41546 5.48214 5.56090 5.73190 5.87657 5.96180 6.10791 6.51265 6.53522 6.81374 6.85294 8.30083 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015585 B = 0.004104 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.169277 B = 6820.184294 C = 7693.873985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.392 6.392 3 C 0.080 3.920 4 C -0.173 4.173 5 C -0.174 4.174 6 C 0.131 3.869 7 N -0.987 5.987 8 C 0.084 3.916 9 S 2.710 3.290 10 O -0.994 6.994 11 O -0.967 6.967 12 C -0.648 4.648 13 C -0.145 4.145 14 C -0.126 4.126 15 C -0.134 4.134 16 C 0.061 3.939 17 C -0.498 4.498 18 H 0.076 0.924 19 C 0.035 3.965 20 N -0.831 5.831 21 Si 0.986 3.014 22 H -0.262 1.262 23 H -0.264 1.264 24 H -0.261 1.261 25 C -0.140 4.140 26 H 0.076 0.924 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.067 0.933 36 H 0.124 0.876 37 H 0.067 0.933 38 H 0.105 0.895 39 H 0.064 0.936 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.117 0.883 43 H 0.290 0.710 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.756 10.135 -4.862 16.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.312 6.312 3 C 0.039 3.961 4 C -0.231 4.231 5 C -0.231 4.231 6 C 0.006 3.994 7 N -0.826 5.826 8 C -0.061 4.061 9 S 2.802 3.198 10 O -0.984 6.984 11 O -0.957 6.957 12 C -0.735 4.735 13 C -0.165 4.165 14 C -0.145 4.145 15 C -0.154 4.154 16 C 0.058 3.942 17 C -0.528 4.528 18 H 0.094 0.906 19 C -0.179 4.179 20 N -0.457 5.457 21 Si 0.806 3.194 22 H -0.187 1.187 23 H -0.189 1.189 24 H -0.185 1.185 25 C -0.161 4.161 26 H 0.095 0.905 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.107 0.893 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.085 0.915 36 H 0.142 0.858 37 H 0.086 0.914 38 H 0.124 0.876 39 H 0.082 0.918 40 H 0.147 0.853 41 H 0.146 0.854 42 H 0.135 0.865 43 H 0.101 0.899 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.016 9.459 -5.054 16.106 hybrid contribution 0.991 -0.058 1.026 1.428 sum -11.025 9.401 -4.028 15.039 Atomic orbital electron populations 1.22899 0.81170 1.02710 1.00950 1.88212 1.20244 1.27597 1.95135 1.22194 0.93434 0.83982 0.96465 1.22348 1.02718 1.01330 0.96721 1.22492 1.02381 1.01177 0.97076 1.21625 0.92518 0.98563 0.86711 1.57100 1.81877 1.26700 1.16923 1.21856 1.01880 1.00025 0.82292 1.01257 0.73161 0.72999 0.72386 1.93454 1.87539 1.77814 1.39635 1.93531 1.65829 1.79373 1.57010 1.30566 1.23497 1.17559 1.01900 1.20477 0.92308 1.06192 0.97561 1.21180 0.96410 1.01026 0.95884 1.21725 0.99841 1.01564 0.92273 1.18075 0.91525 0.90158 0.94453 1.19843 1.01615 1.37422 0.93914 0.90614 1.26709 0.94930 0.91886 1.04329 1.69782 1.09879 1.26472 1.39581 0.85130 0.79034 0.79018 0.76194 1.18690 1.18872 1.18465 1.20908 0.97058 1.04880 0.93239 0.90514 0.92675 0.92727 0.89275 0.90734 0.92909 0.92017 0.91339 0.89336 0.91500 0.85768 0.91450 0.87610 0.91754 0.85309 0.85398 0.86491 0.89902 0.87358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 10.22 113.37 1.16 1.58 16 2 O -0.39 -11.87 8.10 -129.83 -1.05 -12.92 16 3 C 0.08 1.85 0.89 -10.79 -0.01 1.84 16 4 C -0.17 -3.18 8.25 71.98 0.59 -2.58 16 5 C -0.17 -2.93 7.14 71.98 0.51 -2.42 16 6 C 0.13 3.43 4.71 86.38 0.41 3.84 16 7 N -0.99 -29.39 2.92 -539.13 -1.58 -30.97 16 8 C 0.08 1.86 8.88 127.77 1.13 3.00 16 9 S 2.71 108.35 5.49 -56.49 -0.31 108.04 16 10 O -0.99 -42.29 16.47 -128.00 -2.11 -44.40 16 11 O -0.97 -43.40 14.32 -119.99 -1.72 -45.12 16 12 C -0.65 -29.61 5.96 22.22 0.13 -29.48 16 13 C -0.14 -6.38 9.53 22.46 0.21 -6.16 16 14 C -0.13 -5.74 10.02 22.22 0.22 -5.52 16 15 C -0.13 -6.97 8.66 22.73 0.20 -6.77 16 16 C 0.06 3.32 5.56 -21.29 -0.12 3.20 16 17 C -0.50 -26.92 9.07 23.46 0.21 -26.71 16 18 H 0.08 4.00 7.86 -2.91 -0.02 3.98 16 19 C 0.04 1.76 5.27 85.26 0.45 2.21 16 20 N -0.83 -42.06 10.78 21.83 0.24 -41.83 16 21 Si 0.99 37.76 29.57 68.60 2.03 39.79 16 22 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 23 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 24 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 25 C -0.14 -7.13 9.27 22.73 0.21 -6.92 16 26 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 27 H 0.05 1.02 6.42 -2.39 -0.02 1.01 16 28 H 0.05 0.99 6.59 -2.39 -0.02 0.97 16 29 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 30 H 0.07 1.15 6.54 -2.39 -0.02 1.14 16 31 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.06 1.17 5.70 -2.38 -0.01 1.16 16 33 H 0.07 0.97 6.96 -2.39 -0.02 0.96 16 34 H 0.09 1.08 8.13 -2.39 -0.02 1.06 16 35 H 0.07 2.09 7.70 -2.39 -0.02 2.07 16 36 H 0.12 2.33 7.95 -2.39 -0.02 2.31 16 37 H 0.07 1.35 6.51 -2.39 -0.02 1.33 16 38 H 0.11 1.60 7.89 -2.39 -0.02 1.58 16 39 H 0.06 1.51 7.89 -2.39 -0.02 1.49 16 40 H 0.13 4.92 7.73 -2.91 -0.02 4.90 16 41 H 0.13 4.92 8.06 -2.91 -0.02 4.89 16 42 H 0.12 6.22 6.17 -2.91 -0.02 6.20 16 43 H 0.29 13.20 8.30 -92.70 -0.77 12.43 16 44 H 0.11 5.45 7.50 -2.91 -0.02 5.43 16 Total: -1.00 -70.21 360.72 1.82 -68.39 By element: Atomic # 1 Polarization: 28.91 SS G_CDS: 1.00 Total: 29.91 kcal Atomic # 6 Polarization: -76.21 SS G_CDS: 5.32 Total: -70.90 kcal Atomic # 7 Polarization: -71.45 SS G_CDS: -1.34 Total: -72.79 kcal Atomic # 8 Polarization: -97.56 SS G_CDS: -4.88 Total: -102.44 kcal Atomic # 14 Polarization: 37.76 SS G_CDS: 2.03 Total: 39.79 kcal Atomic # 16 Polarization: 108.35 SS G_CDS: -0.31 Total: 108.04 kcal Total: -70.21 1.82 -68.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619490947.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.403 kcal (2) G-P(sol) polarization free energy of solvation -70.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds