Wall clock time and date at job start Tue Mar 31 2020 14:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47272 * 2 1 4 4 C 1.53005 * 109.47103 * 120.00338 * 2 1 3 5 5 C 1.52998 * 109.46993 * 239.99905 * 2 1 3 6 6 H 1.08998 * 109.47258 * 293.74407 * 5 2 1 7 7 C 1.53000 * 109.46940 * 53.74611 * 5 2 1 8 8 O 1.42899 * 109.47337 * 57.73376 * 7 5 2 9 9 N 1.46502 * 109.47273 * 173.74251 * 5 2 1 10 10 S 1.65602 * 120.00206 * 145.00048 * 9 5 2 11 11 O 1.42096 * 106.40167 * 178.54197 * 10 9 5 12 12 O 1.42105 * 106.40214 * 311.46177 * 10 9 5 13 13 C 1.76193 * 107.21585 * 65.00175 * 10 9 5 14 14 C 1.38660 * 119.87945 * 269.72598 * 13 10 9 15 15 C 1.38608 * 120.50442 * 179.72201 * 14 13 10 16 16 C 1.37641 * 120.24777 * 0.55886 * 15 14 13 17 17 C 1.40696 * 119.74103 * 359.71695 * 16 15 14 18 18 C 1.41398 * 120.24085 * 180.02562 * 17 16 15 19 19 H 1.07996 * 120.00003 * 208.98599 * 18 17 16 20 20 C 1.39949 * 120.00229 * 28.98359 * 18 17 16 21 21 N 1.30828 * 119.99800 * 13.62010 * 20 18 17 22 22 Si 1.86795 * 120.00018 * 193.62562 * 20 18 17 23 23 H 1.48499 * 109.47362 * 359.97438 * 22 20 18 24 24 H 1.48506 * 109.47038 * 120.00159 * 22 20 18 25 25 H 1.48502 * 109.47084 * 239.99724 * 22 20 18 26 26 C 1.37604 * 119.87810 * 90.00289 * 13 10 9 27 27 H 1.09003 * 109.46990 * 59.99651 * 1 2 3 28 28 H 1.09007 * 109.46711 * 300.00252 * 1 2 3 29 29 H 1.08996 * 109.47544 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47088 * 72.00165 * 3 2 1 31 31 H 1.09004 * 109.47446 * 191.99764 * 3 2 1 32 32 H 1.09002 * 109.47549 * 312.00229 * 3 2 1 33 33 H 1.08996 * 109.47295 * 59.99389 * 4 2 1 34 34 H 1.08998 * 109.46961 * 180.02562 * 4 2 1 35 35 H 1.09007 * 109.46855 * 299.99322 * 4 2 1 36 36 H 1.09010 * 109.46959 * 177.73104 * 7 5 2 37 37 H 1.09001 * 109.46803 * 297.73049 * 7 5 2 38 38 H 0.96698 * 113.99796 * 180.02562 * 8 7 5 39 39 H 0.97005 * 119.99836 * 325.00469 * 9 5 2 40 40 H 1.08006 * 119.74347 * 0.02562 * 14 13 10 41 41 H 1.08003 * 119.87835 * 180.25475 * 15 14 13 42 42 H 1.08003 * 120.12517 * 179.74885 * 16 15 14 43 43 H 0.96994 * 119.99616 * 180.02562 * 21 20 18 44 44 H 1.07999 * 120.12220 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 2.0399 -0.7213 -1.2492 6 1 1.7709 -1.7761 -1.1950 7 6 1.4056 -0.0964 -2.4935 8 8 1.7146 1.2981 -2.5365 9 7 3.4972 -0.5923 -1.3269 10 16 4.4075 -1.8365 -1.9315 11 8 5.7579 -1.3949 -1.9061 12 8 3.9628 -3.0154 -1.2742 13 6 3.9762 -2.0210 -3.6298 14 6 2.9474 -2.8770 -3.9922 15 6 2.5935 -3.0276 -5.3239 16 6 3.2692 -2.3358 -6.3034 17 6 4.3186 -1.4687 -5.9478 18 6 5.0194 -0.7524 -6.9454 19 1 6.0523 -0.4786 -6.7885 20 6 4.3747 -0.3982 -8.1359 21 7 3.0725 -0.4859 -8.2257 22 14 5.3736 0.1996 -9.5969 23 1 6.8152 0.2081 -9.2407 24 1 5.1537 -0.7082 -10.7515 25 1 4.9456 1.5745 -9.9597 26 6 4.6654 -1.3193 -4.5922 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8617 1.8908 0.9774 31 1 3.1089 1.4500 -0.2136 32 1 1.5128 2.0143 -0.7637 33 1 1.6766 -1.7489 1.2493 34 1 3.1300 -0.7209 1.2494 35 1 1.6767 -0.2074 2.1393 36 1 1.7995 -0.5835 -3.3856 37 1 0.3243 -0.2281 -2.4550 38 1 1.3433 1.7598 -3.3007 39 1 3.9289 0.2220 -1.0242 40 1 2.4145 -3.4270 -3.2306 41 1 1.7879 -3.6941 -5.5944 42 1 2.9944 -2.4577 -7.3407 43 1 2.6257 -0.2408 -9.0510 44 1 5.4691 -0.6561 -4.3081 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619496086.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:06 Heat of formation + Delta-G solvation = -117.271325 kcal Electronic energy + Delta-G solvation = -27397.479006 eV Core-core repulsion = 23634.170215 eV Total energy + Delta-G solvation = -3763.308792 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.14757 -37.68474 -36.61515 -35.54055 -35.27347 -33.84270 -33.15115 -30.10062 -29.85078 -28.56027 -27.13515 -26.69738 -25.49549 -22.74305 -21.89963 -21.03037 -19.13935 -18.89051 -18.03452 -17.20476 -16.84000 -16.23420 -15.91361 -15.16898 -15.08041 -14.71849 -14.48414 -14.33234 -13.77812 -13.47607 -13.36398 -13.17585 -12.65595 -12.58000 -12.45540 -12.25017 -11.94955 -11.78726 -11.60499 -11.52520 -11.51714 -11.39447 -11.38260 -11.38098 -11.00253 -10.93531 -10.73998 -10.63011 -10.58156 -10.49153 -9.76632 -9.64729 -9.52950 -9.38707 -9.04926 -8.06057 -7.68547 -6.92024 -4.56765 1.06302 2.16311 2.59682 2.99852 3.02202 3.05920 3.58387 3.82945 4.26024 4.41093 4.45048 4.66635 4.84901 4.92427 5.12430 5.34468 5.37624 5.39723 5.51054 5.59527 5.64683 5.77737 5.84129 5.95810 5.98071 6.01636 6.03988 6.08515 6.12993 6.26100 6.32521 6.49716 6.62870 6.67263 6.72049 6.82159 7.02331 7.18160 7.33367 7.36071 7.67376 7.79919 7.85229 7.91098 8.38436 8.65065 8.70043 10.04379 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.016499 B = 0.004205 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.627800 B = 6657.786481 C = 7207.627396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.066 4.066 3 C -0.139 4.139 4 C -0.144 4.144 5 C 0.167 3.833 6 H 0.100 0.900 7 C 0.049 3.951 8 O -0.556 6.556 9 N -1.106 6.106 10 S 2.685 3.315 11 O -0.974 6.974 12 O -0.977 6.977 13 C -0.633 4.633 14 C -0.147 4.147 15 C -0.122 4.122 16 C -0.113 4.113 17 C 0.093 3.907 18 C -0.462 4.462 19 H 0.082 0.918 20 C 0.075 3.925 21 N -0.802 5.802 22 Si 0.911 3.089 23 H -0.259 1.259 24 H -0.272 1.272 25 H -0.274 1.274 26 C -0.114 4.114 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.041 0.959 31 H 0.052 0.948 32 H 0.087 0.913 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.067 0.933 37 H 0.052 0.948 38 H 0.371 0.629 39 H 0.416 0.584 40 H 0.105 0.895 41 H 0.098 0.902 42 H 0.122 0.878 43 H 0.281 0.719 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.927 2.971 9.850 12.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.067 4.067 3 C -0.197 4.197 4 C -0.202 4.202 5 C 0.059 3.941 6 H 0.118 0.882 7 C -0.030 4.030 8 O -0.362 6.362 9 N -0.866 5.866 10 S 2.780 3.220 11 O -0.965 6.965 12 O -0.967 6.967 13 C -0.724 4.724 14 C -0.168 4.168 15 C -0.142 4.142 16 C -0.133 4.133 17 C 0.090 3.910 18 C -0.492 4.492 19 H 0.100 0.900 20 C -0.142 4.142 21 N -0.428 5.428 22 Si 0.736 3.264 23 H -0.183 1.183 24 H -0.197 1.197 25 H -0.199 1.199 26 C -0.136 4.136 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.105 0.895 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.218 0.782 39 H 0.252 0.748 40 H 0.123 0.877 41 H 0.116 0.884 42 H 0.140 0.860 43 H 0.092 0.908 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.252 2.213 10.696 12.585 hybrid contribution -0.199 0.870 -1.930 2.126 sum -6.451 3.082 8.766 11.312 Atomic orbital electron populations 1.21942 0.94231 1.01738 1.02098 1.20670 0.95559 0.96545 0.93942 1.22007 1.01549 0.94895 1.01211 1.21915 1.01544 1.00191 0.96515 1.20884 0.79430 0.99778 0.94009 0.88180 1.22887 0.98332 0.83022 0.98805 1.86543 1.79520 1.20761 1.49336 1.55599 1.15857 1.34986 1.80126 1.01747 0.72698 0.72726 0.74780 1.93535 1.33313 1.81783 1.87831 1.93511 1.82460 1.46409 1.74287 1.29786 1.10038 1.11226 1.21395 1.20076 0.98744 1.01600 0.96418 1.20806 0.99791 1.00315 0.93256 1.21596 0.97728 0.95170 0.98772 1.17684 0.91780 0.90418 0.91151 1.19638 0.99124 1.31256 0.99188 0.89972 1.25886 0.94895 0.93670 0.99744 1.69759 1.08896 1.36572 1.27533 0.86199 0.81113 0.78766 0.80361 1.18280 1.19679 1.19892 1.20835 1.00167 0.99771 0.92783 0.91932 0.92567 0.92677 0.93990 0.92916 0.89495 0.92454 0.92437 0.92783 0.91491 0.92994 0.78155 0.74759 0.87674 0.88422 0.85999 0.90775 0.87064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 7.91 37.16 0.29 -1.08 16 2 C -0.07 -0.74 0.63 -154.51 -0.10 -0.84 16 3 C -0.14 -1.56 7.47 37.15 0.28 -1.29 16 4 C -0.14 -1.60 8.34 37.16 0.31 -1.29 16 5 C 0.17 2.24 2.11 -67.93 -0.14 2.10 16 6 H 0.10 1.36 7.50 -51.93 -0.39 0.97 16 7 C 0.05 0.65 6.25 37.16 0.23 0.89 16 8 O -0.56 -7.06 9.90 -35.23 -0.35 -7.41 16 9 N -1.11 -16.71 4.84 -4.89 -0.02 -16.74 16 10 S 2.68 50.68 5.72 -107.50 -0.61 50.07 16 11 O -0.97 -20.90 17.27 -57.17 -0.99 -21.88 16 12 O -0.98 -19.68 16.60 -57.17 -0.95 -20.63 16 13 C -0.63 -13.42 4.99 -39.66 -0.20 -13.62 16 14 C -0.15 -3.04 8.66 -39.29 -0.34 -3.38 16 15 C -0.12 -2.62 10.02 -39.66 -0.40 -3.01 16 16 C -0.11 -2.71 8.66 -38.87 -0.34 -3.05 16 17 C 0.09 2.34 5.53 -106.83 -0.59 1.75 16 18 C -0.46 -11.70 9.05 -37.74 -0.34 -12.04 16 19 H 0.08 2.03 7.88 -52.49 -0.41 1.62 16 20 C 0.08 1.78 5.19 -17.34 -0.09 1.69 16 21 N -0.80 -19.36 11.02 55.55 0.61 -18.75 16 22 Si 0.91 17.94 29.58 -169.99 -5.03 12.91 16 23 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 24 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 25 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 26 C -0.11 -2.69 9.26 -38.87 -0.36 -3.05 16 27 H 0.06 0.59 6.38 -51.93 -0.33 0.26 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.04 0.42 8.09 -51.93 -0.42 0.00 16 31 H 0.05 0.62 5.83 -51.93 -0.30 0.32 16 32 H 0.09 1.01 5.67 -51.93 -0.29 0.71 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.68 7.79 -51.93 -0.40 0.27 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.07 1.09 6.18 -51.92 -0.32 0.77 16 37 H 0.05 0.59 6.47 -51.93 -0.34 0.25 16 38 H 0.37 3.76 9.12 45.56 0.42 4.17 16 39 H 0.42 5.77 6.52 -34.47 -0.22 5.55 16 40 H 0.11 1.95 7.59 -52.48 -0.40 1.55 16 41 H 0.10 1.82 8.06 -52.48 -0.42 1.40 16 42 H 0.12 3.01 6.35 -52.48 -0.33 2.67 16 43 H 0.28 6.18 8.30 -40.82 -0.34 5.84 16 44 H 0.11 2.58 7.60 -52.49 -0.40 2.18 16 LS Contribution 358.23 15.07 5.40 5.40 Total: -1.00 -29.61 358.23 -9.12 -38.74 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: -5.40 Total: 14.51 kcal Atomic # 6 Polarization: -34.44 SS G_CDS: -1.78 Total: -36.22 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: 0.59 Total: -35.48 kcal Atomic # 8 Polarization: -47.64 SS G_CDS: -2.28 Total: -49.93 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.03 Total: 12.91 kcal Atomic # 16 Polarization: 50.68 SS G_CDS: -0.61 Total: 50.07 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.61 -9.12 -38.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619496086.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.533 kcal (2) G-P(sol) polarization free energy of solvation -29.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds