Wall clock time and date at job start Tue Mar 31 2020 14:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47272 * 2 1 4 4 C 1.53005 * 109.47103 * 120.00338 * 2 1 3 5 5 C 1.52998 * 109.46993 * 239.99905 * 2 1 3 6 6 H 1.08998 * 109.47258 * 293.74407 * 5 2 1 7 7 C 1.53000 * 109.46940 * 53.74611 * 5 2 1 8 8 O 1.42899 * 109.47337 * 57.73376 * 7 5 2 9 9 N 1.46502 * 109.47273 * 173.74251 * 5 2 1 10 10 S 1.65602 * 120.00206 * 145.00048 * 9 5 2 11 11 O 1.42096 * 106.40167 * 178.54197 * 10 9 5 12 12 O 1.42105 * 106.40214 * 311.46177 * 10 9 5 13 13 C 1.76193 * 107.21585 * 65.00175 * 10 9 5 14 14 C 1.38660 * 119.87945 * 269.72598 * 13 10 9 15 15 C 1.38608 * 120.50442 * 179.72201 * 14 13 10 16 16 C 1.37641 * 120.24777 * 0.55886 * 15 14 13 17 17 C 1.40696 * 119.74103 * 359.71695 * 16 15 14 18 18 C 1.41398 * 120.24085 * 180.02562 * 17 16 15 19 19 H 1.07996 * 120.00003 * 208.98599 * 18 17 16 20 20 C 1.39949 * 120.00229 * 28.98359 * 18 17 16 21 21 N 1.30828 * 119.99800 * 13.62010 * 20 18 17 22 22 Si 1.86795 * 120.00018 * 193.62562 * 20 18 17 23 23 H 1.48499 * 109.47362 * 359.97438 * 22 20 18 24 24 H 1.48506 * 109.47038 * 120.00159 * 22 20 18 25 25 H 1.48502 * 109.47084 * 239.99724 * 22 20 18 26 26 C 1.37604 * 119.87810 * 90.00289 * 13 10 9 27 27 H 1.09003 * 109.46990 * 59.99651 * 1 2 3 28 28 H 1.09007 * 109.46711 * 300.00252 * 1 2 3 29 29 H 1.08996 * 109.47544 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47088 * 72.00165 * 3 2 1 31 31 H 1.09004 * 109.47446 * 191.99764 * 3 2 1 32 32 H 1.09002 * 109.47549 * 312.00229 * 3 2 1 33 33 H 1.08996 * 109.47295 * 59.99389 * 4 2 1 34 34 H 1.08998 * 109.46961 * 180.02562 * 4 2 1 35 35 H 1.09007 * 109.46855 * 299.99322 * 4 2 1 36 36 H 1.09010 * 109.46959 * 177.73104 * 7 5 2 37 37 H 1.09001 * 109.46803 * 297.73049 * 7 5 2 38 38 H 0.96698 * 113.99796 * 180.02562 * 8 7 5 39 39 H 0.97005 * 119.99836 * 325.00469 * 9 5 2 40 40 H 1.08006 * 119.74347 * 0.02562 * 14 13 10 41 41 H 1.08003 * 119.87835 * 180.25475 * 15 14 13 42 42 H 1.08003 * 120.12517 * 179.74885 * 16 15 14 43 43 H 0.96994 * 119.99616 * 180.02562 * 21 20 18 44 44 H 1.07999 * 120.12220 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 2.0399 -0.7213 -1.2492 6 1 1.7709 -1.7761 -1.1950 7 6 1.4056 -0.0964 -2.4935 8 8 1.7146 1.2981 -2.5365 9 7 3.4972 -0.5923 -1.3269 10 16 4.4075 -1.8365 -1.9315 11 8 5.7579 -1.3949 -1.9061 12 8 3.9628 -3.0154 -1.2742 13 6 3.9762 -2.0210 -3.6298 14 6 2.9474 -2.8770 -3.9922 15 6 2.5935 -3.0276 -5.3239 16 6 3.2692 -2.3358 -6.3034 17 6 4.3186 -1.4687 -5.9478 18 6 5.0194 -0.7524 -6.9454 19 1 6.0523 -0.4786 -6.7885 20 6 4.3747 -0.3982 -8.1359 21 7 3.0725 -0.4859 -8.2257 22 14 5.3736 0.1996 -9.5969 23 1 6.8152 0.2081 -9.2407 24 1 5.1537 -0.7082 -10.7515 25 1 4.9456 1.5745 -9.9597 26 6 4.6654 -1.3193 -4.5922 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8617 1.8908 0.9774 31 1 3.1089 1.4500 -0.2136 32 1 1.5128 2.0143 -0.7637 33 1 1.6766 -1.7489 1.2493 34 1 3.1300 -0.7209 1.2494 35 1 1.6767 -0.2074 2.1393 36 1 1.7995 -0.5835 -3.3856 37 1 0.3243 -0.2281 -2.4550 38 1 1.3433 1.7598 -3.3007 39 1 3.9289 0.2220 -1.0242 40 1 2.4145 -3.4270 -3.2306 41 1 1.7879 -3.6941 -5.5944 42 1 2.9944 -2.4577 -7.3407 43 1 2.6257 -0.2408 -9.0510 44 1 5.4691 -0.6561 -4.3081 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619496086.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:05 Heat of formation + Delta-G solvation = -138.124098 kcal Electronic energy + Delta-G solvation = -27398.383250 eV Core-core repulsion = 23634.170215 eV Total energy + Delta-G solvation = -3764.213036 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.16864 -39.44560 -38.24239 -36.92116 -36.52350 -35.63260 -34.29896 -31.89893 -31.60711 -29.59854 -28.00668 -27.57024 -27.31589 -23.83141 -23.60957 -22.80363 -20.63343 -19.93601 -19.66788 -18.54485 -18.01092 -17.73313 -17.40714 -16.81070 -16.62019 -16.30276 -15.58466 -15.44253 -15.18142 -15.06459 -14.80122 -14.31129 -14.11716 -13.71349 -13.60312 -13.48561 -13.29889 -13.19141 -13.17653 -13.08396 -13.01564 -12.78965 -12.68308 -12.64677 -12.57397 -12.35238 -12.22289 -11.72788 -11.53758 -11.49978 -11.43931 -11.27039 -11.16305 -10.56642 -10.30401 -9.81119 -9.49612 -8.69940 -6.45653 -0.48268 0.40504 0.84551 1.37644 1.43369 1.51267 2.12600 2.18596 2.57624 2.78783 3.39015 3.48787 3.53071 3.69370 3.93707 4.14140 4.29734 4.35315 4.42760 4.45235 4.49981 4.62678 4.84418 4.86241 4.88750 4.90652 4.92961 5.02840 5.05810 5.07370 5.18118 5.21272 5.25922 5.35104 5.41289 5.45467 5.56472 5.62056 5.78079 5.87860 5.95440 6.10980 6.14963 6.53513 6.81032 6.85930 6.94446 8.28618 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.016499 B = 0.004205 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.627800 B = 6657.786481 C = 7207.627396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.061 4.061 3 C -0.139 4.139 4 C -0.147 4.147 5 C 0.157 3.843 6 H 0.102 0.898 7 C 0.052 3.948 8 O -0.562 6.562 9 N -1.093 6.093 10 S 2.710 3.290 11 O -1.001 7.001 12 O -0.984 6.984 13 C -0.635 4.635 14 C -0.138 4.138 15 C -0.121 4.121 16 C -0.131 4.131 17 C 0.067 3.933 18 C -0.502 4.502 19 H 0.073 0.927 20 C 0.041 3.959 21 N -0.826 5.826 22 Si 0.979 3.021 23 H -0.263 1.263 24 H -0.263 1.263 25 H -0.264 1.264 26 C -0.136 4.136 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.041 0.959 32 H 0.084 0.916 33 H 0.056 0.944 34 H 0.045 0.955 35 H 0.071 0.929 36 H 0.035 0.965 37 H 0.077 0.923 38 H 0.382 0.618 39 H 0.423 0.577 40 H 0.133 0.867 41 H 0.128 0.872 42 H 0.110 0.890 43 H 0.290 0.710 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.477 3.153 10.805 14.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.063 4.063 3 C -0.196 4.196 4 C -0.205 4.205 5 C 0.050 3.950 6 H 0.120 0.880 7 C -0.027 4.027 8 O -0.369 6.369 9 N -0.856 5.856 10 S 2.804 3.196 11 O -0.992 6.992 12 O -0.974 6.974 13 C -0.724 4.724 14 C -0.159 4.159 15 C -0.140 4.140 16 C -0.150 4.150 17 C 0.064 3.936 18 C -0.532 4.532 19 H 0.091 0.909 20 C -0.174 4.174 21 N -0.452 5.452 22 Si 0.800 3.200 23 H -0.187 1.187 24 H -0.187 1.187 25 H -0.189 1.189 26 C -0.157 4.157 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.102 0.898 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.090 0.910 36 H 0.053 0.947 37 H 0.095 0.905 38 H 0.231 0.769 39 H 0.261 0.739 40 H 0.150 0.850 41 H 0.146 0.854 42 H 0.128 0.872 43 H 0.101 0.899 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.817 2.390 11.632 14.217 hybrid contribution 0.192 0.802 -2.082 2.240 sum -7.624 3.192 9.550 12.630 Atomic orbital electron populations 1.21938 0.92556 1.02462 1.02875 1.20666 0.96805 0.96113 0.92673 1.21998 1.00742 0.94964 1.01910 1.21954 1.00882 1.00467 0.97153 1.21191 0.77949 1.00427 0.95445 0.88001 1.22810 0.99604 0.83067 0.97249 1.86522 1.79903 1.20426 1.50045 1.55312 1.16750 1.34429 1.79080 1.00972 0.72091 0.72958 0.73607 1.93494 1.35510 1.82315 1.87847 1.93496 1.82571 1.47496 1.73828 1.30166 1.09336 1.10298 1.22650 1.20443 0.98018 1.00624 0.96813 1.21127 0.99923 0.99882 0.93070 1.21583 0.98401 0.96164 0.98901 1.17980 0.92635 0.91091 0.91922 1.19824 0.99154 1.33255 1.00963 0.90906 1.26606 0.95826 0.93363 1.01608 1.69784 1.09966 1.36878 1.28563 0.85192 0.79163 0.78654 0.76963 1.18719 1.18714 1.18898 1.20827 1.00942 1.00972 0.92973 0.91789 0.91216 0.92002 0.92607 0.94005 0.89791 0.92458 0.93563 0.90997 0.94669 0.90494 0.76903 0.73857 0.84957 0.85365 0.87205 0.89918 0.87918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 7.91 71.98 0.57 -1.69 16 2 C -0.06 -1.22 0.63 -52.18 -0.03 -1.26 16 3 C -0.14 -2.82 7.47 71.98 0.54 -2.29 16 4 C -0.15 -2.91 8.34 71.98 0.60 -2.31 16 5 C 0.16 3.94 2.11 44.99 0.10 4.04 16 6 H 0.10 2.54 7.50 -2.39 -0.02 2.52 16 7 C 0.05 1.32 6.25 71.98 0.45 1.77 16 8 O -0.56 -13.60 9.90 -148.98 -1.47 -15.08 16 9 N -1.09 -32.05 4.84 -169.39 -0.82 -32.87 16 10 S 2.71 101.08 5.72 -56.49 -0.32 100.76 16 11 O -1.00 -43.27 17.27 -128.00 -2.21 -45.48 16 12 O -0.98 -38.24 16.60 -128.00 -2.12 -40.37 16 13 C -0.64 -27.00 4.99 22.22 0.11 -26.89 16 14 C -0.14 -5.55 8.66 22.46 0.19 -5.36 16 15 C -0.12 -5.09 10.02 22.22 0.22 -4.87 16 16 C -0.13 -6.41 8.66 22.73 0.20 -6.21 16 17 C 0.07 3.49 5.53 -21.29 -0.12 3.37 16 18 C -0.50 -26.52 9.05 23.46 0.21 -26.31 16 19 H 0.07 3.81 7.88 -2.91 -0.02 3.79 16 20 C 0.04 1.97 5.19 85.26 0.44 2.42 16 21 N -0.83 -40.52 11.02 21.83 0.24 -40.28 16 22 Si 0.98 37.17 29.58 68.60 2.03 39.20 16 23 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 24 H -0.26 -9.51 7.11 99.48 0.71 -8.81 16 25 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 26 C -0.14 -6.64 9.26 22.73 0.21 -6.43 16 27 H 0.06 1.01 6.38 -2.39 -0.02 1.00 16 28 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.05 0.97 8.09 -2.39 -0.02 0.96 16 31 H 0.04 0.93 5.83 -2.38 -0.01 0.91 16 32 H 0.08 1.77 5.67 -2.39 -0.01 1.76 16 33 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.05 1.00 7.79 -2.39 -0.02 0.99 16 35 H 0.07 1.15 8.14 -2.38 -0.02 1.14 16 36 H 0.03 1.12 6.18 -2.38 -0.01 1.11 16 37 H 0.08 1.56 6.47 -2.39 -0.02 1.55 16 38 H 0.38 7.37 9.12 -74.06 -0.68 6.70 16 39 H 0.42 11.45 6.52 -96.74 -0.63 10.82 16 40 H 0.13 4.57 7.59 -2.91 -0.02 4.55 16 41 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 42 H 0.11 5.57 6.35 -2.91 -0.02 5.55 16 43 H 0.29 12.79 8.30 -92.71 -0.77 12.02 16 44 H 0.10 5.03 7.60 -2.91 -0.02 5.01 16 Total: -1.00 -64.07 358.23 -1.26 -65.33 By element: Atomic # 1 Polarization: 41.06 SS G_CDS: -0.27 Total: 40.79 kcal Atomic # 6 Polarization: -75.70 SS G_CDS: 3.69 Total: -72.01 kcal Atomic # 7 Polarization: -72.57 SS G_CDS: -0.58 Total: -73.15 kcal Atomic # 8 Polarization: -95.11 SS G_CDS: -5.81 Total: -100.92 kcal Atomic # 14 Polarization: 37.17 SS G_CDS: 2.03 Total: 39.20 kcal Atomic # 16 Polarization: 101.08 SS G_CDS: -0.32 Total: 100.76 kcal Total: -64.07 -1.26 -65.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619496086.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.790 kcal (2) G-P(sol) polarization free energy of solvation -64.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds