Wall clock time and date at job start Tue Mar 31 2020 14:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47261 * 2 1 4 4 C 1.53002 * 109.47238 * 240.00041 * 2 1 3 5 5 C 1.53000 * 109.46912 * 120.00231 * 2 1 3 6 6 H 1.09007 * 109.46888 * 183.86836 * 5 2 1 7 7 C 1.52998 * 109.47336 * 63.86994 * 5 2 1 8 8 O 1.42903 * 109.46964 * 301.84328 * 7 5 2 9 9 N 1.46498 * 109.47048 * 303.86139 * 5 2 1 10 10 S 1.65598 * 120.00116 * 214.99980 * 9 5 2 11 11 O 1.42098 * 106.40020 * 178.54408 * 10 9 5 12 12 O 1.42101 * 106.40459 * 311.46656 * 10 9 5 13 13 C 1.76202 * 107.21636 * 65.00362 * 10 9 5 14 14 C 1.38651 * 119.87818 * 269.72233 * 13 10 9 15 15 C 1.38616 * 120.50181 * 179.71887 * 14 13 10 16 16 C 1.37644 * 120.24494 * 0.56139 * 15 14 13 17 17 C 1.40696 * 119.74392 * 359.71848 * 16 15 14 18 18 C 1.41400 * 120.24048 * 180.02562 * 17 16 15 19 19 H 1.07993 * 119.99866 * 149.68063 * 18 17 16 20 20 C 1.39950 * 119.99915 * 329.67235 * 18 17 16 21 21 N 1.30823 * 119.99802 * 166.21087 * 20 18 17 22 22 Si 1.86798 * 120.00119 * 346.21299 * 20 18 17 23 23 H 1.48499 * 109.46988 * 93.52502 * 22 20 18 24 24 H 1.48499 * 109.47140 * 213.52505 * 22 20 18 25 25 H 1.48500 * 109.47058 * 333.53029 * 22 20 18 26 26 C 1.37600 * 119.87049 * 90.00017 * 13 10 9 27 27 H 1.08991 * 109.47426 * 288.92009 * 1 2 3 28 28 H 1.09000 * 109.47201 * 48.92007 * 1 2 3 29 29 H 1.09002 * 109.47247 * 168.92094 * 1 2 3 30 30 H 1.09001 * 109.47146 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47285 * 300.00184 * 3 2 1 32 32 H 1.09006 * 109.47174 * 60.00196 * 3 2 1 33 33 H 1.09000 * 109.47103 * 300.00084 * 4 2 1 34 34 H 1.08999 * 109.46866 * 60.00087 * 4 2 1 35 35 H 1.09001 * 109.47098 * 180.02562 * 4 2 1 36 36 H 1.08999 * 109.47102 * 181.84831 * 7 5 2 37 37 H 1.08997 * 109.47620 * 61.84689 * 7 5 2 38 38 H 0.96696 * 114.00145 * 180.02562 * 8 7 5 39 39 H 0.97004 * 119.99531 * 35.00998 * 9 5 2 40 40 H 1.08004 * 119.74734 * 0.02562 * 14 13 10 41 41 H 1.07992 * 119.87678 * 180.25634 * 15 14 13 42 42 H 1.07994 * 120.12104 * 179.74398 * 16 15 14 43 43 H 0.97000 * 119.99663 * 180.02562 * 21 20 18 44 44 H 1.08000 * 120.13324 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0399 -0.7213 1.2492 6 1 3.1278 -0.6617 1.2846 7 6 1.6110 -2.1892 1.2015 8 8 0.1869 -2.2665 1.1118 9 7 1.4771 -0.0865 2.4436 10 16 2.3778 0.0156 3.8294 11 8 1.5760 0.7043 4.7792 12 8 2.9117 -1.2814 4.0576 13 6 3.7505 1.0647 3.4831 14 6 4.9329 0.5201 3.0057 15 6 6.0188 1.3340 2.7235 16 6 5.9378 2.6931 2.9258 17 6 4.7449 3.2560 3.4154 18 6 4.6499 4.6509 3.6266 19 1 3.6980 5.1496 3.5197 20 6 5.7894 5.3852 3.9743 21 7 5.7714 6.6916 3.9073 22 14 7.3362 4.4999 4.5340 23 1 8.2294 4.2794 3.3684 24 1 8.0399 5.3260 5.5477 25 1 6.9687 3.1907 5.1307 26 6 3.6468 2.4206 3.6929 27 1 -0.3634 0.3332 0.9720 28 1 -0.3633 0.6753 -0.7746 29 1 -0.3634 -1.0085 -0.1975 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 -1.7489 -1.2493 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7216 -1.2490 36 1 1.9460 -2.6952 2.1069 37 1 2.0565 -2.6698 0.3306 38 1 -0.1566 -3.1698 1.0779 39 1 0.5767 0.2738 2.4226 40 1 5.0066 -0.5458 2.8478 41 1 6.9335 0.8996 2.3481 42 1 6.7864 3.3248 2.7092 43 1 6.5613 7.2005 4.1479 44 1 2.7263 2.8423 4.0687 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619499335.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:09 Heat of formation + Delta-G solvation = -113.593404 kcal Electronic energy + Delta-G solvation = -27403.603142 eV Core-core repulsion = 23640.453837 eV Total energy + Delta-G solvation = -3763.149305 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.25219 -37.96624 -36.72596 -35.79183 -35.38225 -33.79553 -33.22813 -30.77202 -30.20752 -28.69756 -27.07630 -26.75096 -25.41464 -22.89872 -22.43573 -20.94564 -19.31101 -18.94209 -18.09689 -17.46427 -16.94197 -16.38293 -16.36558 -15.44885 -15.07379 -14.81091 -14.62539 -14.44246 -13.86351 -13.85227 -13.19409 -13.16142 -12.90622 -12.74497 -12.56196 -12.34205 -12.24586 -11.88692 -11.74023 -11.72838 -11.62485 -11.52116 -11.50039 -11.46966 -11.03944 -10.83776 -10.82786 -10.63301 -10.47828 -10.33297 -10.00412 -9.82813 -9.72573 -9.37996 -9.13230 -8.29337 -7.90820 -7.08407 -4.66936 0.91426 1.87799 2.38412 2.96895 3.10318 3.18433 3.43749 3.83342 4.08709 4.20978 4.31498 4.60852 4.80356 4.85913 5.03220 5.12346 5.26333 5.28133 5.37368 5.43857 5.67389 5.72453 5.77413 5.85620 5.92160 5.95316 5.99163 6.02209 6.09736 6.14076 6.24245 6.41477 6.42377 6.50050 6.56248 6.62337 6.84076 7.03734 7.15871 7.23681 7.34394 7.55550 7.58408 7.74257 8.16173 8.39199 8.59472 9.93588 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.017803 B = 0.004291 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.382057 B = 6524.443972 C = 6966.804757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.067 4.067 3 C -0.146 4.146 4 C -0.142 4.142 5 C 0.168 3.832 6 H 0.099 0.901 7 C 0.054 3.946 8 O -0.555 6.555 9 N -1.106 6.106 10 S 2.686 3.314 11 O -0.970 6.970 12 O -0.974 6.974 13 C -0.625 4.625 14 C -0.159 4.159 15 C -0.091 4.091 16 C -0.198 4.198 17 C 0.074 3.926 18 C -0.441 4.441 19 H 0.095 0.905 20 C 0.082 3.918 21 N -0.804 5.804 22 Si 0.909 3.091 23 H -0.269 1.269 24 H -0.288 1.288 25 H -0.243 1.243 26 C -0.099 4.099 27 H 0.051 0.949 28 H 0.043 0.957 29 H 0.084 0.916 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.368 0.632 39 H 0.417 0.583 40 H 0.110 0.890 41 H 0.102 0.898 42 H 0.106 0.894 43 H 0.288 0.712 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.938 -13.703 -8.931 17.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.069 4.069 3 C -0.203 4.203 4 C -0.200 4.200 5 C 0.060 3.940 6 H 0.117 0.883 7 C -0.026 4.026 8 O -0.360 6.360 9 N -0.865 5.865 10 S 2.781 3.219 11 O -0.960 6.960 12 O -0.964 6.964 13 C -0.716 4.716 14 C -0.180 4.180 15 C -0.111 4.111 16 C -0.218 4.218 17 C 0.070 3.930 18 C -0.469 4.469 19 H 0.113 0.887 20 C -0.137 4.137 21 N -0.427 5.427 22 Si 0.736 3.264 23 H -0.195 1.195 24 H -0.215 1.215 25 H -0.166 1.166 26 C -0.119 4.119 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.103 0.897 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.214 0.786 39 H 0.254 0.746 40 H 0.128 0.872 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.098 0.902 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.838 -13.247 -8.063 16.570 hybrid contribution 0.989 -0.006 -0.192 1.007 sum -4.849 -13.252 -8.255 16.349 Atomic orbital electron populations 1.22014 0.93606 1.03116 1.00864 1.20705 0.96950 0.95725 0.93476 1.21911 1.01581 0.94723 1.02074 1.21937 1.00976 1.00178 0.96909 1.20874 0.97756 0.90164 0.85208 0.88308 1.22845 0.81940 0.97106 1.00661 1.86663 1.20760 1.31614 1.97011 1.55601 1.28258 1.74358 1.28286 1.01816 0.73709 0.74003 0.72407 1.93553 1.68856 1.75360 1.58253 1.93511 1.80202 1.38730 1.83917 1.29975 1.15652 1.08906 1.17032 1.20046 0.93091 0.97887 1.07023 1.20680 0.97146 0.93803 0.99428 1.21290 0.99272 0.94888 1.06317 1.17798 0.91274 0.93596 0.90320 1.19539 0.97367 0.90447 1.39530 0.88673 1.26159 1.00261 0.94808 0.92517 1.69644 1.31474 1.07190 1.34407 0.86352 0.80144 0.80957 0.78977 1.19516 1.21517 1.16583 1.20837 1.00093 0.90412 1.00606 0.92966 0.93845 0.89737 0.92192 0.92787 0.91957 0.92344 0.92413 0.92561 0.92161 0.92643 0.78583 0.74645 0.87156 0.87946 0.87678 0.90177 0.86294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 7.37 37.16 0.27 -1.20 16 2 C -0.07 -0.74 0.62 -154.51 -0.10 -0.84 16 3 C -0.15 -1.87 8.33 37.15 0.31 -1.56 16 4 C -0.14 -1.32 7.99 37.16 0.30 -1.02 16 5 C 0.17 2.05 1.97 -67.93 -0.13 1.92 16 6 H 0.10 1.24 7.24 -51.92 -0.38 0.87 16 7 C 0.05 0.56 6.34 37.16 0.24 0.79 16 8 O -0.56 -5.12 9.77 -35.23 -0.34 -5.46 16 9 N -1.11 -15.46 4.73 -4.89 -0.02 -15.48 16 10 S 2.69 48.02 5.65 -107.50 -0.61 47.42 16 11 O -0.97 -20.04 17.27 -57.17 -0.99 -21.03 16 12 O -0.97 -18.54 16.50 -57.17 -0.94 -19.49 16 13 C -0.62 -12.62 5.81 -39.66 -0.23 -12.85 16 14 C -0.16 -3.12 8.92 -39.29 -0.35 -3.47 16 15 C -0.09 -1.85 10.02 -39.66 -0.40 -2.24 16 16 C -0.20 -4.50 7.02 -38.87 -0.27 -4.78 16 17 C 0.07 1.80 5.14 -106.82 -0.55 1.25 16 18 C -0.44 -11.47 9.60 -37.74 -0.36 -11.83 16 19 H 0.10 2.58 8.06 -52.49 -0.42 2.16 16 20 C 0.08 2.08 5.46 -17.34 -0.09 1.99 16 21 N -0.80 -20.75 13.93 55.55 0.77 -19.98 16 22 Si 0.91 20.11 24.41 -169.99 -4.15 15.96 16 23 H -0.27 -5.68 6.68 56.52 0.38 -5.30 16 24 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.24 -5.54 6.69 56.52 0.38 -5.16 16 26 C -0.10 -2.22 9.26 -38.87 -0.36 -2.58 16 27 H 0.05 0.58 5.96 -51.93 -0.31 0.27 16 28 H 0.04 0.44 8.10 -51.93 -0.42 0.02 16 29 H 0.08 0.85 5.63 -51.93 -0.29 0.56 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.87 7.72 -51.93 -0.40 0.47 16 33 H 0.06 0.48 6.40 -51.93 -0.33 0.15 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.70 7.61 -51.93 -0.40 0.31 16 37 H 0.06 0.46 6.47 -51.93 -0.34 0.12 16 38 H 0.37 1.92 9.12 45.56 0.42 2.34 16 39 H 0.42 5.34 6.66 -34.47 -0.23 5.11 16 40 H 0.11 1.90 7.59 -52.48 -0.40 1.50 16 41 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 42 H 0.11 2.36 4.43 -52.49 -0.23 2.13 16 43 H 0.29 6.72 8.30 -40.82 -0.34 6.38 16 44 H 0.12 2.62 7.60 -52.49 -0.40 2.22 16 LS Contribution 354.12 15.07 5.34 5.34 Total: -1.00 -30.55 354.12 -8.10 -38.66 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -5.43 Total: 10.49 kcal Atomic # 6 Polarization: -34.69 SS G_CDS: -1.73 Total: -36.42 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 0.75 Total: -35.46 kcal Atomic # 8 Polarization: -43.70 SS G_CDS: -2.27 Total: -45.97 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -4.15 Total: 15.96 kcal Atomic # 16 Polarization: 48.02 SS G_CDS: -0.61 Total: 47.42 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.55 -8.10 -38.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619499335.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.938 kcal (2) G-P(sol) polarization free energy of solvation -30.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds