Wall clock time and date at job start Tue Mar 31 2020 14:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47261 * 2 1 4 4 C 1.53002 * 109.47238 * 240.00041 * 2 1 3 5 5 C 1.53000 * 109.46912 * 120.00231 * 2 1 3 6 6 H 1.09007 * 109.46888 * 183.86836 * 5 2 1 7 7 C 1.52998 * 109.47336 * 63.86994 * 5 2 1 8 8 O 1.42903 * 109.46964 * 301.84328 * 7 5 2 9 9 N 1.46498 * 109.47048 * 303.86139 * 5 2 1 10 10 S 1.65598 * 120.00116 * 214.99980 * 9 5 2 11 11 O 1.42098 * 106.40020 * 178.54408 * 10 9 5 12 12 O 1.42101 * 106.40459 * 311.46656 * 10 9 5 13 13 C 1.76202 * 107.21636 * 65.00362 * 10 9 5 14 14 C 1.38651 * 119.87818 * 269.72233 * 13 10 9 15 15 C 1.38616 * 120.50181 * 179.71887 * 14 13 10 16 16 C 1.37644 * 120.24494 * 0.56139 * 15 14 13 17 17 C 1.40696 * 119.74392 * 359.71848 * 16 15 14 18 18 C 1.41400 * 120.24048 * 180.02562 * 17 16 15 19 19 H 1.07993 * 119.99866 * 149.68063 * 18 17 16 20 20 C 1.39950 * 119.99915 * 329.67235 * 18 17 16 21 21 N 1.30823 * 119.99802 * 166.21087 * 20 18 17 22 22 Si 1.86798 * 120.00119 * 346.21299 * 20 18 17 23 23 H 1.48499 * 109.46988 * 93.52502 * 22 20 18 24 24 H 1.48499 * 109.47140 * 213.52505 * 22 20 18 25 25 H 1.48500 * 109.47058 * 333.53029 * 22 20 18 26 26 C 1.37600 * 119.87049 * 90.00017 * 13 10 9 27 27 H 1.08991 * 109.47426 * 288.92009 * 1 2 3 28 28 H 1.09000 * 109.47201 * 48.92007 * 1 2 3 29 29 H 1.09002 * 109.47247 * 168.92094 * 1 2 3 30 30 H 1.09001 * 109.47146 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47285 * 300.00184 * 3 2 1 32 32 H 1.09006 * 109.47174 * 60.00196 * 3 2 1 33 33 H 1.09000 * 109.47103 * 300.00084 * 4 2 1 34 34 H 1.08999 * 109.46866 * 60.00087 * 4 2 1 35 35 H 1.09001 * 109.47098 * 180.02562 * 4 2 1 36 36 H 1.08999 * 109.47102 * 181.84831 * 7 5 2 37 37 H 1.08997 * 109.47620 * 61.84689 * 7 5 2 38 38 H 0.96696 * 114.00145 * 180.02562 * 8 7 5 39 39 H 0.97004 * 119.99531 * 35.00998 * 9 5 2 40 40 H 1.08004 * 119.74734 * 0.02562 * 14 13 10 41 41 H 1.07992 * 119.87678 * 180.25634 * 15 14 13 42 42 H 1.07994 * 120.12104 * 179.74398 * 16 15 14 43 43 H 0.97000 * 119.99663 * 180.02562 * 21 20 18 44 44 H 1.08000 * 120.13324 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0399 -0.7213 1.2492 6 1 3.1278 -0.6617 1.2846 7 6 1.6110 -2.1892 1.2015 8 8 0.1869 -2.2665 1.1118 9 7 1.4771 -0.0865 2.4436 10 16 2.3778 0.0156 3.8294 11 8 1.5760 0.7043 4.7792 12 8 2.9117 -1.2814 4.0576 13 6 3.7505 1.0647 3.4831 14 6 4.9329 0.5201 3.0057 15 6 6.0188 1.3340 2.7235 16 6 5.9378 2.6931 2.9258 17 6 4.7449 3.2560 3.4154 18 6 4.6499 4.6509 3.6266 19 1 3.6980 5.1496 3.5197 20 6 5.7894 5.3852 3.9743 21 7 5.7714 6.6916 3.9073 22 14 7.3362 4.4999 4.5340 23 1 8.2294 4.2794 3.3684 24 1 8.0399 5.3260 5.5477 25 1 6.9687 3.1907 5.1307 26 6 3.6468 2.4206 3.6929 27 1 -0.3634 0.3332 0.9720 28 1 -0.3633 0.6753 -0.7746 29 1 -0.3634 -1.0085 -0.1975 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 -1.7489 -1.2493 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7216 -1.2490 36 1 1.9460 -2.6952 2.1069 37 1 2.0565 -2.6698 0.3306 38 1 -0.1566 -3.1698 1.0779 39 1 0.5767 0.2738 2.4226 40 1 5.0066 -0.5458 2.8478 41 1 6.9335 0.8996 2.3481 42 1 6.7864 3.3248 2.7092 43 1 6.5613 7.2005 4.1479 44 1 2.7263 2.8423 4.0687 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619499335.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:08 Heat of formation + Delta-G solvation = -136.998952 kcal Electronic energy + Delta-G solvation = -27404.618083 eV Core-core repulsion = 23640.453837 eV Total energy + Delta-G solvation = -3764.164246 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.16622 -39.69834 -38.26896 -36.93677 -36.53959 -35.63676 -34.30493 -32.56786 -31.91155 -29.59563 -28.00565 -27.57687 -27.25224 -24.15589 -23.77744 -22.69385 -20.74746 -19.94464 -19.68972 -18.60259 -18.10921 -17.97326 -17.45230 -17.09431 -16.68397 -16.31756 -15.61478 -15.56635 -15.36013 -14.90006 -14.77834 -14.69764 -14.10333 -14.06354 -13.67512 -13.53051 -13.47888 -13.41429 -13.20790 -13.14909 -13.09127 -12.85472 -12.69545 -12.60957 -12.56467 -12.36389 -12.06670 -11.82365 -11.72536 -11.55841 -11.48925 -11.37979 -11.04736 -10.50515 -10.30147 -9.98962 -9.69320 -8.95574 -6.61547 -0.54999 0.16739 0.64355 1.19238 1.35130 1.41945 2.02047 2.07883 2.41766 2.74269 3.28865 3.41613 3.46667 3.69261 3.93016 4.12320 4.17604 4.30203 4.35022 4.41479 4.45425 4.49902 4.61829 4.74643 4.80436 4.85513 4.89443 4.92482 5.03770 5.06041 5.07982 5.19727 5.24954 5.33144 5.36805 5.41752 5.45859 5.60296 5.63000 5.74735 5.76556 5.97950 6.12219 6.23017 6.56714 6.68352 7.06590 8.12858 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.017803 B = 0.004291 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.382057 B = 6524.443972 C = 6966.804757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.061 4.061 3 C -0.148 4.148 4 C -0.140 4.140 5 C 0.153 3.847 6 H 0.098 0.902 7 C 0.059 3.941 8 O -0.565 6.565 9 N -1.093 6.093 10 S 2.711 3.289 11 O -1.001 7.001 12 O -0.977 6.977 13 C -0.631 4.631 14 C -0.139 4.139 15 C -0.093 4.093 16 C -0.203 4.203 17 C 0.056 3.944 18 C -0.482 4.482 19 H 0.059 0.941 20 C 0.046 3.954 21 N -0.847 5.847 22 Si 0.960 3.040 23 H -0.247 1.247 24 H -0.277 1.277 25 H -0.254 1.254 26 C -0.119 4.119 27 H 0.041 0.959 28 H 0.045 0.955 29 H 0.096 0.904 30 H 0.047 0.953 31 H 0.061 0.939 32 H 0.041 0.959 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.048 0.952 37 H 0.084 0.916 38 H 0.388 0.612 39 H 0.423 0.577 40 H 0.145 0.855 41 H 0.145 0.855 42 H 0.109 0.891 43 H 0.295 0.705 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.016 -17.446 -10.479 20.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.063 4.063 3 C -0.205 4.205 4 C -0.198 4.198 5 C 0.047 3.953 6 H 0.115 0.885 7 C -0.020 4.020 8 O -0.373 6.373 9 N -0.856 5.856 10 S 2.803 3.197 11 O -0.991 6.991 12 O -0.967 6.967 13 C -0.720 4.720 14 C -0.159 4.159 15 C -0.112 4.112 16 C -0.222 4.222 17 C 0.053 3.947 18 C -0.511 4.511 19 H 0.077 0.923 20 C -0.169 4.169 21 N -0.473 5.473 22 Si 0.783 3.217 23 H -0.172 1.172 24 H -0.204 1.204 25 H -0.177 1.177 26 C -0.139 4.139 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.114 0.886 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.102 0.898 38 H 0.237 0.763 39 H 0.262 0.738 40 H 0.163 0.837 41 H 0.163 0.837 42 H 0.127 0.873 43 H 0.106 0.894 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.909 -16.989 -9.626 20.134 hybrid contribution 0.546 0.911 0.184 1.078 sum -4.363 -16.078 -9.442 19.149 Atomic orbital electron populations 1.22013 0.93179 1.03851 1.00389 1.20674 0.97222 0.94380 0.93980 1.21936 1.00766 0.96315 1.01506 1.21931 1.01168 1.00884 0.95774 1.21225 0.97845 0.91767 0.84507 0.88452 1.22719 0.82763 0.95153 1.01387 1.86601 1.20075 1.33649 1.96977 1.55321 1.27903 1.74302 1.28035 1.01089 0.72906 0.73108 0.72625 1.93512 1.69259 1.75985 1.60343 1.93502 1.80462 1.38305 1.84456 1.30413 1.17447 1.08221 1.15894 1.20621 0.92088 0.99638 1.03572 1.21157 0.98986 0.92676 0.98399 1.21495 0.98535 0.96388 1.05818 1.17922 0.92791 0.93054 0.90942 1.19492 0.96587 0.91802 1.43231 0.92323 1.26814 1.02567 0.95308 0.92183 1.69678 1.32791 1.08260 1.36599 0.85591 0.77388 0.79337 0.79390 1.17164 1.20408 1.17745 1.20821 0.99629 0.91628 1.01868 0.94018 0.93554 0.88605 0.93378 0.91973 0.94026 0.90635 0.91893 0.92309 0.93361 0.89822 0.76272 0.73820 0.83688 0.83682 0.87347 0.89400 0.87354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 7.37 71.98 0.53 -2.08 16 2 C -0.06 -1.21 0.62 -52.18 -0.03 -1.24 16 3 C -0.15 -3.69 8.33 71.98 0.60 -3.09 16 4 C -0.14 -2.12 7.99 71.98 0.58 -1.54 16 5 C 0.15 3.36 1.97 44.99 0.09 3.44 16 6 H 0.10 2.14 7.24 -2.38 -0.02 2.13 16 7 C 0.06 1.01 6.34 71.98 0.46 1.47 16 8 O -0.57 -8.42 9.77 -148.98 -1.46 -9.88 16 9 N -1.09 -29.05 4.73 -169.39 -0.80 -29.85 16 10 S 2.71 93.78 5.65 -56.49 -0.32 93.46 16 11 O -1.00 -41.50 17.27 -128.00 -2.21 -43.71 16 12 O -0.98 -34.72 16.50 -128.00 -2.11 -36.83 16 13 C -0.63 -24.87 5.81 22.22 0.13 -24.75 16 14 C -0.14 -4.97 8.92 22.46 0.20 -4.77 16 15 C -0.09 -3.46 10.02 22.22 0.22 -3.23 16 16 C -0.20 -9.00 7.02 22.73 0.16 -8.84 16 17 C 0.06 2.82 5.14 -21.29 -0.11 2.71 16 18 C -0.48 -26.74 9.60 23.46 0.23 -26.52 16 19 H 0.06 3.52 8.06 -2.91 -0.02 3.50 16 20 C 0.05 2.43 5.46 85.26 0.47 2.89 16 21 N -0.85 -45.92 13.93 21.83 0.30 -45.61 16 22 Si 0.96 41.43 24.41 68.60 1.67 43.10 16 23 H -0.25 -9.68 6.68 99.48 0.66 -9.01 16 24 H -0.28 -11.37 7.11 99.48 0.71 -10.67 16 25 H -0.25 -11.26 6.69 99.48 0.67 -10.59 16 26 C -0.12 -5.51 9.26 22.73 0.21 -5.30 16 27 H 0.04 0.87 5.96 -2.39 -0.01 0.86 16 28 H 0.05 0.85 8.10 -2.39 -0.02 0.83 16 29 H 0.10 1.62 5.63 -2.39 -0.01 1.61 16 30 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.04 1.18 7.72 -2.38 -0.02 1.16 16 33 H 0.07 0.90 6.40 -2.39 -0.02 0.88 16 34 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.05 0.96 7.61 -2.39 -0.02 0.94 16 37 H 0.08 0.98 6.47 -2.39 -0.02 0.96 16 38 H 0.39 2.56 9.12 -74.06 -0.68 1.89 16 39 H 0.42 10.49 6.66 -96.74 -0.64 9.85 16 40 H 0.15 4.25 7.59 -2.91 -0.02 4.23 16 41 H 0.15 4.16 8.06 -2.91 -0.02 4.14 16 42 H 0.11 4.70 4.43 -2.91 -0.01 4.69 16 43 H 0.30 14.34 8.30 -92.71 -0.77 13.57 16 44 H 0.11 5.12 7.60 -2.91 -0.02 5.10 16 Total: -1.00 -68.15 354.12 -1.56 -69.72 By element: Atomic # 1 Polarization: 30.82 SS G_CDS: -0.36 Total: 30.46 kcal Atomic # 6 Polarization: -74.57 SS G_CDS: 3.72 Total: -70.85 kcal Atomic # 7 Polarization: -74.97 SS G_CDS: -0.50 Total: -75.46 kcal Atomic # 8 Polarization: -84.64 SS G_CDS: -5.78 Total: -90.42 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 1.67 Total: 43.10 kcal Atomic # 16 Polarization: 93.78 SS G_CDS: -0.32 Total: 93.46 kcal Total: -68.15 -1.56 -69.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619499335.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.282 kcal (2) G-P(sol) polarization free energy of solvation -68.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds