Wall clock time and date at job start Tue Mar 31 2020 15:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47134 * 2 1 4 4 H 1.08993 * 109.47351 * 54.99867 * 3 2 1 5 5 C 1.53007 * 109.47161 * 294.99790 * 3 2 1 6 6 C 1.53004 * 109.47078 * 175.00077 * 3 2 1 7 7 H 1.09001 * 109.46582 * 302.14581 * 6 3 2 8 8 O 1.42897 * 109.47216 * 62.14524 * 6 3 2 9 9 C 1.52997 * 109.47094 * 182.14778 * 6 3 2 10 10 N 1.46496 * 109.47048 * 174.03013 * 9 6 3 11 11 S 1.65602 * 120.00000 * 162.79782 * 10 9 6 12 12 O 1.42106 * 106.40379 * 309.21062 * 11 10 9 13 13 O 1.42097 * 106.40539 * 176.29076 * 11 10 9 14 14 C 1.76202 * 107.22011 * 62.74843 * 11 10 9 15 15 C 1.37635 * 120.12964 * 245.26598 * 14 11 10 16 16 C 1.38619 * 120.24700 * 180.29438 * 15 14 11 17 17 C 1.38656 * 120.50174 * 359.45138 * 16 15 14 18 18 C 1.37598 * 120.24541 * 0.54856 * 17 16 15 19 19 C 1.40700 * 120.12629 * 65.28981 * 14 11 10 20 20 C 1.41396 * 120.24249 * 359.95546 * 19 14 11 21 21 H 1.07992 * 120.00362 * 329.63461 * 20 19 14 22 22 C 1.39947 * 119.99643 * 149.63211 * 20 19 14 23 23 N 1.30828 * 120.00430 * 344.91178 * 22 20 19 24 24 Si 1.86807 * 119.99885 * 164.91064 * 22 20 19 25 25 H 1.48504 * 109.46995 * 65.00017 * 24 22 20 26 26 H 1.48501 * 109.47017 * 185.00277 * 24 22 20 27 27 H 1.48499 * 109.46874 * 305.00346 * 24 22 20 28 28 H 1.09001 * 109.47573 * 300.00138 * 1 2 3 29 29 H 1.09000 * 109.47220 * 60.00166 * 1 2 3 30 30 H 1.09002 * 109.47599 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47282 * 240.00184 * 2 1 3 32 32 H 1.09000 * 109.47220 * 119.99834 * 2 1 3 33 33 H 1.09000 * 109.46828 * 185.30907 * 5 3 2 34 34 H 1.08997 * 109.46869 * 305.30944 * 5 3 2 35 35 H 1.09000 * 109.46561 * 65.31144 * 5 3 2 36 36 H 0.96695 * 114.00038 * 60.00010 * 8 6 3 37 37 H 1.09001 * 109.47283 * 54.02356 * 9 6 3 38 38 H 1.09005 * 109.47167 * 294.03049 * 9 6 3 39 39 H 0.97001 * 120.00300 * 342.79003 * 10 9 6 40 40 H 1.08000 * 119.87889 * 0.03163 * 15 14 11 41 41 H 1.07999 * 119.74573 * 179.70663 * 16 15 14 42 42 H 1.08001 * 119.87523 * 180.30030 * 17 16 15 43 43 H 1.07997 * 120.12429 * 179.74510 * 18 17 16 44 44 H 0.96991 * 120.00207 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4443 0.1257 7 1 3.8547 0.9234 1.0383 8 8 4.1367 0.7811 -1.0035 9 6 4.0704 2.8873 0.1796 10 7 5.5115 2.8903 0.4426 11 16 6.4059 4.2505 0.1383 12 8 6.0927 4.6480 -1.1896 13 8 7.7286 3.9665 0.5730 14 6 5.7971 5.5222 1.1950 15 6 5.1857 6.6325 0.6585 16 6 4.7114 7.6373 1.4873 17 6 4.8363 7.5316 2.8642 18 6 5.4441 6.4306 3.4224 19 6 5.9346 5.4069 2.5905 20 6 6.5606 4.2706 3.1530 21 1 6.4983 3.3162 2.6517 22 6 7.2609 4.3830 4.3594 23 7 7.5919 5.5633 4.8163 24 14 7.7231 2.8474 5.3176 25 1 8.6868 2.0413 4.5258 26 1 8.3465 3.2378 6.6076 27 1 6.5033 2.0424 5.5808 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.0779 3.1218 -1.3489 34 1 1.9902 1.5355 -2.1517 35 1 0.5494 2.2096 -1.3529 36 1 3.9198 1.1912 -1.8519 37 1 3.5545 3.4236 0.9761 38 1 3.8741 3.3770 -0.7743 39 1 5.9420 2.0957 0.7950 40 1 5.0789 6.7232 -0.4123 41 1 4.2372 8.5073 1.0574 42 1 4.4588 8.3183 3.5006 43 1 5.5440 6.3522 4.4949 44 1 8.0776 5.6411 5.6522 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619572632.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:35 Heat of formation + Delta-G solvation = -132.499195 kcal Electronic energy + Delta-G solvation = -26899.218636 eV Core-core repulsion = 23135.249514 eV Total energy + Delta-G solvation = -3763.969121 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -38.93610 -37.60647 -36.19379 -34.90203 -34.80372 -34.07858 -33.81823 -30.28514 -30.16043 -29.59960 -27.45053 -25.55927 -25.07133 -21.98121 -21.67117 -21.15542 -20.07275 -18.57901 -17.70662 -17.00962 -16.85171 -16.03875 -15.82256 -15.39525 -15.15841 -14.80072 -14.42192 -14.29126 -14.10769 -13.64101 -13.27532 -13.19137 -12.87576 -12.74703 -12.49120 -12.22361 -11.93235 -11.81252 -11.59727 -11.55750 -11.30658 -11.27333 -11.16478 -11.13547 -11.06495 -10.99071 -10.76931 -10.72340 -10.55887 -10.51189 -9.90624 -9.73730 -9.46019 -9.40210 -8.75249 -8.05481 -7.62563 -7.05935 -4.76352 1.54909 2.32512 2.72049 2.96057 2.99023 3.11039 3.77359 3.90943 4.37134 4.42018 4.58984 4.71744 4.78342 4.79676 5.11345 5.18879 5.25312 5.32711 5.37359 5.42728 5.57887 5.64774 5.78981 5.83361 5.85713 5.92493 5.95688 5.97935 6.02574 6.20708 6.24227 6.29924 6.33577 6.40685 6.77270 6.90684 7.06204 7.28975 7.46355 7.53261 7.63519 7.70349 7.77610 7.87684 8.25898 8.49127 8.62216 9.89626 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011180 B = 0.004717 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.861701 B = 5934.119468 C = 6657.250738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.124 4.124 4 H 0.083 0.917 5 C -0.160 4.160 6 C 0.106 3.894 7 H 0.106 0.894 8 O -0.556 6.556 9 C 0.092 3.908 10 N -1.116 6.116 11 S 2.701 3.299 12 O -1.000 7.000 13 O -0.963 6.963 14 C -0.776 4.776 15 C -0.003 4.003 16 C -0.251 4.251 17 C -0.075 4.075 18 C -0.158 4.158 19 C 0.190 3.810 20 C -0.450 4.450 21 H 0.088 0.912 22 C 0.083 3.917 23 N -0.774 5.774 24 Si 0.912 3.088 25 H -0.257 1.257 26 H -0.274 1.274 27 H -0.259 1.259 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.050 0.950 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.372 0.628 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.413 0.587 40 H 0.107 0.893 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.118 0.882 44 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.894 -7.677 -4.364 14.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.144 4.144 4 H 0.101 0.899 5 C -0.217 4.217 6 C 0.045 3.955 7 H 0.123 0.877 8 O -0.361 6.361 9 C -0.036 4.036 10 N -0.873 5.873 11 S 2.799 3.201 12 O -0.991 6.991 13 O -0.954 6.954 14 C -0.871 4.871 15 C -0.022 4.022 16 C -0.271 4.271 17 C -0.094 4.094 18 C -0.178 4.178 19 C 0.185 3.815 20 C -0.478 4.478 21 H 0.106 0.894 22 C -0.139 4.139 23 N -0.397 5.397 24 Si 0.735 3.265 25 H -0.181 1.181 26 H -0.199 1.199 27 H -0.183 1.183 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.220 0.780 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.246 0.754 40 H 0.125 0.875 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.136 0.864 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.910 -7.745 -4.423 13.333 hybrid contribution -0.278 0.029 0.932 0.973 sum -10.188 -7.717 -3.491 13.249 Atomic orbital electron populations 1.21831 0.96123 1.01334 1.01821 1.21474 0.95354 0.95759 1.02512 1.21845 0.95777 0.97218 0.99533 0.89876 1.21996 1.01993 1.00864 0.96890 1.22195 0.91090 0.91932 0.90285 0.87657 1.86556 1.76241 1.56672 1.16657 1.21901 0.81647 0.98121 1.01883 1.55547 1.17414 1.30827 1.83526 1.01054 0.73095 0.72894 0.73082 1.93436 1.85557 1.83086 1.36976 1.93547 1.34799 1.84205 1.82831 1.29905 1.31360 1.17692 1.08140 1.20260 0.92115 0.92084 0.97779 1.20481 1.12203 1.00653 0.93792 1.20882 0.97286 0.96693 0.94564 1.21375 1.01224 0.95538 0.99620 1.16973 0.84643 0.91508 0.88397 1.19794 1.26716 0.96287 1.05010 0.89439 1.25925 0.93465 0.97839 0.96647 1.69783 1.25977 1.25043 1.18856 0.86276 0.80119 0.81461 0.78685 1.18116 1.19904 1.18299 0.92838 0.92606 0.93043 0.91441 0.92034 0.91768 0.92385 0.92037 0.77966 0.90906 0.90421 0.75357 0.87463 0.88731 0.88816 0.86415 0.90049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.67 37.16 0.36 -0.85 16 2 C -0.11 -1.02 5.21 -26.73 -0.14 -1.16 16 3 C -0.12 -1.19 2.25 -90.61 -0.20 -1.40 16 4 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 5 C -0.16 -1.40 8.14 37.16 0.30 -1.10 16 6 C 0.11 1.23 2.81 -26.73 -0.08 1.16 16 7 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 8 O -0.56 -6.75 12.75 -35.23 -0.45 -7.20 16 9 C 0.09 1.31 5.38 -4.05 -0.02 1.29 16 10 N -1.12 -19.31 5.05 -10.61 -0.05 -19.37 16 11 S 2.70 59.10 4.96 -107.50 -0.53 58.57 16 12 O -1.00 -22.61 16.49 -57.17 -0.94 -23.55 16 13 O -0.96 -24.35 16.58 -57.17 -0.95 -25.30 16 14 C -0.78 -18.38 5.90 -38.87 -0.23 -18.61 16 15 C 0.00 -0.06 9.53 -39.66 -0.38 -0.43 16 16 C -0.25 -5.41 10.05 -39.29 -0.39 -5.81 16 17 C -0.08 -1.67 10.02 -39.66 -0.40 -2.06 16 18 C -0.16 -3.85 8.65 -38.87 -0.34 -4.18 16 19 C 0.19 4.77 5.51 -106.82 -0.59 4.18 16 20 C -0.45 -11.19 7.56 -37.74 -0.29 -11.47 16 21 H 0.09 2.03 5.92 -52.49 -0.31 1.72 16 22 C 0.08 1.99 5.15 -17.34 -0.09 1.90 16 23 N -0.77 -19.08 11.21 55.55 0.62 -18.45 16 24 Si 0.91 17.87 29.59 -169.99 -5.03 12.84 16 25 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 26 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 27 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 28 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.42 6.69 -51.93 -0.35 0.07 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.63 7.89 -51.93 -0.41 0.22 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.60 6.36 -51.93 -0.33 0.27 16 34 H 0.06 0.46 7.03 -51.93 -0.37 0.09 16 35 H 0.06 0.49 6.83 -51.93 -0.35 0.13 16 36 H 0.37 3.67 7.39 45.56 0.34 4.00 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.08 1.08 6.30 -51.93 -0.33 0.75 16 39 H 0.41 6.63 8.50 -34.47 -0.29 6.33 16 40 H 0.11 2.22 7.32 -52.49 -0.38 1.84 16 41 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 42 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 43 H 0.12 2.89 6.52 -52.49 -0.34 2.54 16 44 H 0.29 6.41 8.30 -40.82 -0.34 6.07 16 LS Contribution 363.79 15.07 5.48 5.48 Total: -1.00 -30.84 363.79 -9.97 -40.81 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: -5.64 Total: 14.72 kcal Atomic # 6 Polarization: -36.07 SS G_CDS: -2.48 Total: -38.55 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.57 Total: -37.82 kcal Atomic # 8 Polarization: -53.71 SS G_CDS: -2.34 Total: -56.05 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.03 Total: 12.84 kcal Atomic # 16 Polarization: 59.10 SS G_CDS: -0.53 Total: 58.57 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.84 -9.97 -40.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619572632.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.690 kcal (2) G-P(sol) polarization free energy of solvation -30.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds