Wall clock time and date at job start Tue Mar 31 2020 15:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47134 * 2 1 4 4 H 1.08993 * 109.47351 * 54.99867 * 3 2 1 5 5 C 1.53007 * 109.47161 * 294.99790 * 3 2 1 6 6 C 1.53004 * 109.47078 * 175.00077 * 3 2 1 7 7 H 1.09001 * 109.46582 * 302.14581 * 6 3 2 8 8 O 1.42897 * 109.47216 * 62.14524 * 6 3 2 9 9 C 1.52997 * 109.47094 * 182.14778 * 6 3 2 10 10 N 1.46496 * 109.47048 * 174.03013 * 9 6 3 11 11 S 1.65602 * 120.00000 * 162.79782 * 10 9 6 12 12 O 1.42106 * 106.40379 * 309.21062 * 11 10 9 13 13 O 1.42097 * 106.40539 * 176.29076 * 11 10 9 14 14 C 1.76202 * 107.22011 * 62.74843 * 11 10 9 15 15 C 1.37635 * 120.12964 * 245.26598 * 14 11 10 16 16 C 1.38619 * 120.24700 * 180.29438 * 15 14 11 17 17 C 1.38656 * 120.50174 * 359.45138 * 16 15 14 18 18 C 1.37598 * 120.24541 * 0.54856 * 17 16 15 19 19 C 1.40700 * 120.12629 * 65.28981 * 14 11 10 20 20 C 1.41396 * 120.24249 * 359.95546 * 19 14 11 21 21 H 1.07992 * 120.00362 * 329.63461 * 20 19 14 22 22 C 1.39947 * 119.99643 * 149.63211 * 20 19 14 23 23 N 1.30828 * 120.00430 * 344.91178 * 22 20 19 24 24 Si 1.86807 * 119.99885 * 164.91064 * 22 20 19 25 25 H 1.48504 * 109.46995 * 65.00017 * 24 22 20 26 26 H 1.48501 * 109.47017 * 185.00277 * 24 22 20 27 27 H 1.48499 * 109.46874 * 305.00346 * 24 22 20 28 28 H 1.09001 * 109.47573 * 300.00138 * 1 2 3 29 29 H 1.09000 * 109.47220 * 60.00166 * 1 2 3 30 30 H 1.09002 * 109.47599 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47282 * 240.00184 * 2 1 3 32 32 H 1.09000 * 109.47220 * 119.99834 * 2 1 3 33 33 H 1.09000 * 109.46828 * 185.30907 * 5 3 2 34 34 H 1.08997 * 109.46869 * 305.30944 * 5 3 2 35 35 H 1.09000 * 109.46561 * 65.31144 * 5 3 2 36 36 H 0.96695 * 114.00038 * 60.00010 * 8 6 3 37 37 H 1.09001 * 109.47283 * 54.02356 * 9 6 3 38 38 H 1.09005 * 109.47167 * 294.03049 * 9 6 3 39 39 H 0.97001 * 120.00300 * 342.79003 * 10 9 6 40 40 H 1.08000 * 119.87889 * 0.03163 * 15 14 11 41 41 H 1.07999 * 119.74573 * 179.70663 * 16 15 14 42 42 H 1.08001 * 119.87523 * 180.30030 * 17 16 15 43 43 H 1.07997 * 120.12429 * 179.74510 * 18 17 16 44 44 H 0.96991 * 120.00207 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4443 0.1257 7 1 3.8547 0.9234 1.0383 8 8 4.1367 0.7811 -1.0035 9 6 4.0704 2.8873 0.1796 10 7 5.5115 2.8903 0.4426 11 16 6.4059 4.2505 0.1383 12 8 6.0927 4.6480 -1.1896 13 8 7.7286 3.9665 0.5730 14 6 5.7971 5.5222 1.1950 15 6 5.1857 6.6325 0.6585 16 6 4.7114 7.6373 1.4873 17 6 4.8363 7.5316 2.8642 18 6 5.4441 6.4306 3.4224 19 6 5.9346 5.4069 2.5905 20 6 6.5606 4.2706 3.1530 21 1 6.4983 3.3162 2.6517 22 6 7.2609 4.3830 4.3594 23 7 7.5919 5.5633 4.8163 24 14 7.7231 2.8474 5.3176 25 1 8.6868 2.0413 4.5258 26 1 8.3465 3.2378 6.6076 27 1 6.5033 2.0424 5.5808 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.0779 3.1218 -1.3489 34 1 1.9902 1.5355 -2.1517 35 1 0.5494 2.2096 -1.3529 36 1 3.9198 1.1912 -1.8519 37 1 3.5545 3.4236 0.9761 38 1 3.8741 3.3770 -0.7743 39 1 5.9420 2.0957 0.7950 40 1 5.0789 6.7232 -0.4123 41 1 4.2372 8.5073 1.0574 42 1 4.4588 8.3183 3.5006 43 1 5.5440 6.3522 4.4949 44 1 8.0776 5.6411 5.6522 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619572632.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:34 Heat of formation + Delta-G solvation = -154.267363 kcal Electronic energy + Delta-G solvation = -26900.162575 eV Core-core repulsion = 23135.249514 eV Total energy + Delta-G solvation = -3764.913060 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.86769 -39.37647 -38.01623 -36.65704 -35.87955 -35.63411 -35.17415 -32.02789 -31.39640 -31.00558 -28.39587 -27.34227 -25.97395 -23.45049 -23.02656 -22.81628 -20.93392 -20.16263 -19.49657 -18.50638 -18.20795 -17.56662 -17.19457 -16.76004 -16.49964 -16.07280 -15.83897 -15.42049 -15.35874 -15.05863 -14.91551 -14.45126 -14.42219 -13.93750 -13.64236 -13.39012 -13.30515 -13.02210 -12.98568 -12.93960 -12.84954 -12.80246 -12.77241 -12.51529 -12.44061 -12.35466 -12.17506 -11.98714 -11.64946 -11.48310 -11.31245 -11.18080 -11.13218 -10.70983 -10.19966 -9.84114 -9.43619 -8.81921 -6.60670 -0.15839 0.52837 0.97004 1.36304 1.47376 1.51916 2.15816 2.35292 2.62830 2.99417 3.42263 3.52181 3.68093 3.88716 3.90335 4.03226 4.24698 4.28449 4.33389 4.49159 4.54124 4.62414 4.69529 4.70843 4.72884 4.80869 4.94020 5.01927 5.12096 5.12933 5.14244 5.21483 5.24405 5.28135 5.30206 5.51750 5.55363 5.58151 5.70161 5.79915 5.99110 6.08201 6.21510 6.46301 6.67687 6.82298 6.83368 8.16677 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011180 B = 0.004717 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.861701 B = 5934.119468 C = 6657.250738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.110 4.110 3 C -0.119 4.119 4 H 0.084 0.916 5 C -0.161 4.161 6 C 0.113 3.887 7 H 0.104 0.896 8 O -0.565 6.565 9 C 0.085 3.915 10 N -1.105 6.105 11 S 2.720 3.280 12 O -1.009 7.009 13 O -1.003 7.003 14 C -0.791 4.791 15 C -0.015 4.015 16 C -0.249 4.249 17 C -0.074 4.074 18 C -0.185 4.185 19 C 0.166 3.834 20 C -0.480 4.480 21 H 0.093 0.907 22 C 0.041 3.959 23 N -0.808 5.808 24 Si 0.972 3.028 25 H -0.263 1.263 26 H -0.263 1.263 27 H -0.244 1.244 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.382 0.618 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.419 0.581 40 H 0.123 0.877 41 H 0.128 0.872 42 H 0.123 0.877 43 H 0.107 0.893 44 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.387 -8.324 -4.658 15.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.148 4.148 3 C -0.138 4.138 4 H 0.102 0.898 5 C -0.218 4.218 6 C 0.052 3.948 7 H 0.122 0.878 8 O -0.373 6.373 9 C -0.041 4.041 10 N -0.866 5.866 11 S 2.816 3.184 12 O -0.999 6.999 13 O -0.993 6.993 14 C -0.885 4.885 15 C -0.035 4.035 16 C -0.269 4.269 17 C -0.092 4.092 18 C -0.205 4.205 19 C 0.161 3.839 20 C -0.508 4.508 21 H 0.111 0.889 22 C -0.177 4.177 23 N -0.431 5.431 24 Si 0.792 3.208 25 H -0.188 1.188 26 H -0.187 1.187 27 H -0.167 1.167 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.232 0.768 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.255 0.745 40 H 0.141 0.859 41 H 0.146 0.854 42 H 0.141 0.859 43 H 0.125 0.875 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.420 -8.369 -4.722 14.925 hybrid contribution 0.115 0.304 0.917 0.973 sum -11.305 -8.065 -3.805 14.399 Atomic orbital electron populations 1.21813 0.95127 1.01853 1.02101 1.21441 0.96173 0.94997 1.02202 1.21794 0.93924 0.97938 1.00151 0.89793 1.22010 1.02706 1.00409 0.96666 1.22138 0.92443 0.89890 0.90284 0.87801 1.86538 1.76565 1.56852 1.17298 1.22189 0.79581 1.00287 1.02087 1.55175 1.18666 1.29385 1.83354 1.00342 0.72397 0.73128 0.72513 1.93413 1.85617 1.83644 1.37258 1.93488 1.37607 1.84879 1.83317 1.30175 1.31269 1.19028 1.08076 1.20588 0.92031 0.92019 0.98854 1.20897 1.11228 1.01283 0.93538 1.21240 0.96021 0.96522 0.95447 1.21435 1.02913 0.96836 0.99285 1.17280 0.85212 0.92170 0.89218 1.20089 1.27812 0.96670 1.06236 0.88868 1.26778 0.93040 1.00709 0.97165 1.69824 1.26896 1.26820 1.19594 0.85381 0.80160 0.77777 0.77509 1.18768 1.18666 1.16704 0.92832 0.92043 0.92456 0.91658 0.92470 0.92558 0.91479 0.90972 0.76817 0.91021 0.89879 0.74527 0.85917 0.85374 0.85893 0.87469 0.89372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.67 71.98 0.70 -1.38 16 2 C -0.11 -1.78 5.21 30.59 0.16 -1.62 16 3 C -0.12 -2.08 2.25 -10.79 -0.02 -2.10 16 4 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 5 C -0.16 -2.50 8.14 71.98 0.59 -1.91 16 6 C 0.11 2.50 2.81 30.59 0.09 2.59 16 7 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 8 O -0.57 -12.90 12.75 -148.98 -1.90 -14.80 16 9 C 0.08 2.35 5.38 86.38 0.46 2.82 16 10 N -1.11 -37.95 5.05 -187.50 -0.95 -38.90 16 11 S 2.72 119.45 4.96 -56.49 -0.28 119.17 16 12 O -1.01 -45.14 16.49 -128.00 -2.11 -47.25 16 13 O -1.00 -51.62 16.58 -128.00 -2.12 -53.74 16 14 C -0.79 -37.63 5.90 22.73 0.13 -37.50 16 15 C -0.02 -0.67 9.53 22.22 0.21 -0.46 16 16 C -0.25 -10.28 10.05 22.46 0.23 -10.06 16 17 C -0.07 -3.17 10.02 22.22 0.22 -2.95 16 18 C -0.18 -9.11 8.65 22.73 0.20 -8.91 16 19 C 0.17 8.47 5.51 -21.29 -0.12 8.35 16 20 C -0.48 -24.31 7.56 23.46 0.18 -24.13 16 21 H 0.09 4.40 5.92 -2.91 -0.02 4.38 16 22 C 0.04 2.01 5.15 85.26 0.44 2.45 16 23 N -0.81 -40.59 11.21 21.83 0.24 -40.35 16 24 Si 0.97 36.54 29.59 68.60 2.03 38.57 16 25 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 26 H -0.26 -9.25 7.11 99.48 0.71 -8.55 16 27 H -0.24 -8.47 7.11 99.48 0.71 -7.76 16 28 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.06 0.77 6.69 -2.39 -0.02 0.75 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 1.09 7.89 -2.39 -0.02 1.07 16 32 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.06 0.97 6.36 -2.39 -0.02 0.95 16 34 H 0.07 0.91 7.03 -2.39 -0.02 0.90 16 35 H 0.07 0.98 6.83 -2.39 -0.02 0.96 16 36 H 0.38 6.89 7.39 -74.06 -0.55 6.34 16 37 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.08 2.22 6.30 -2.38 -0.02 2.20 16 39 H 0.42 13.38 8.50 -96.75 -0.82 12.56 16 40 H 0.12 4.91 7.32 -2.91 -0.02 4.89 16 41 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 42 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 43 H 0.11 5.40 6.52 -2.91 -0.02 5.38 16 44 H 0.30 13.34 8.30 -92.71 -0.77 12.57 16 Total: -1.00 -65.94 363.79 -1.96 -67.90 By element: Atomic # 1 Polarization: 44.54 SS G_CDS: -0.34 Total: 44.20 kcal Atomic # 6 Polarization: -78.27 SS G_CDS: 3.46 Total: -74.81 kcal Atomic # 7 Polarization: -78.55 SS G_CDS: -0.70 Total: -79.25 kcal Atomic # 8 Polarization: -109.65 SS G_CDS: -6.13 Total: -115.79 kcal Atomic # 14 Polarization: 36.54 SS G_CDS: 2.03 Total: 38.57 kcal Atomic # 16 Polarization: 119.45 SS G_CDS: -0.28 Total: 119.17 kcal Total: -65.94 -1.96 -67.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619572632.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.363 kcal (2) G-P(sol) polarization free energy of solvation -65.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds