Wall clock time and date at job start Tue Mar 31 2020 15:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46966 * 2 1 4 4 H 1.09000 * 109.47702 * 305.00395 * 3 2 1 5 5 C 1.53003 * 109.47118 * 65.00098 * 3 2 1 6 6 C 1.53000 * 109.47130 * 184.99818 * 3 2 1 7 7 H 1.09000 * 109.47033 * 300.00343 * 6 3 2 8 8 O 1.42898 * 109.46984 * 60.00164 * 6 3 2 9 9 C 1.52998 * 109.47509 * 180.02562 * 6 3 2 10 10 N 1.46501 * 109.47152 * 180.02562 * 9 6 3 11 11 S 1.65603 * 119.99473 * 165.98003 * 10 9 6 12 12 O 1.42106 * 106.39751 * 176.34600 * 11 10 9 13 13 O 1.42095 * 106.40599 * 309.26610 * 11 10 9 14 14 C 1.76199 * 107.21913 * 62.81000 * 11 10 9 15 15 C 1.37640 * 120.12259 * 245.81282 * 14 11 10 16 16 C 1.38614 * 120.24462 * 179.97438 * 15 14 11 17 17 C 1.38664 * 120.50277 * 0.02562 * 16 15 14 18 18 C 1.37598 * 120.24814 * 0.02562 * 17 16 15 19 19 C 1.40697 * 120.12658 * 65.54089 * 14 11 10 20 20 C 1.41390 * 120.24707 * 359.97438 * 19 14 11 21 21 H 1.08004 * 119.99867 * 331.43011 * 20 19 14 22 22 C 1.39942 * 120.00032 * 151.43037 * 20 19 14 23 23 N 1.30818 * 120.00310 * 348.42714 * 22 20 19 24 24 Si 1.86806 * 120.00034 * 168.42953 * 22 20 19 25 25 H 1.48495 * 109.47078 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47097 * 119.99920 * 24 22 20 27 27 H 1.48502 * 109.46796 * 239.99585 * 24 22 20 28 28 H 1.08997 * 109.47234 * 59.99572 * 1 2 3 29 29 H 1.08997 * 109.47171 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46916 * 299.99924 * 1 2 3 31 31 H 1.09002 * 109.46916 * 240.00075 * 2 1 3 32 32 H 1.08999 * 109.46984 * 119.99942 * 2 1 3 33 33 H 1.09003 * 109.47113 * 60.00147 * 5 3 2 34 34 H 1.09002 * 109.47537 * 179.97438 * 5 3 2 35 35 H 1.08997 * 109.47159 * 300.00247 * 5 3 2 36 36 H 0.96705 * 113.99943 * 59.99765 * 8 6 3 37 37 H 1.09003 * 109.46500 * 300.00284 * 9 6 3 38 38 H 1.09002 * 109.47146 * 59.99691 * 9 6 3 39 39 H 0.96993 * 120.00232 * 345.97558 * 10 9 6 40 40 H 1.07993 * 119.88080 * 0.02562 * 15 14 11 41 41 H 1.07995 * 119.74927 * 180.02562 * 16 15 14 42 42 H 1.07998 * 119.87795 * 179.97438 * 17 16 15 43 43 H 1.07996 * 120.12951 * 179.97438 * 18 17 16 44 44 H 0.97003 * 120.00703 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 1.6352 2.1265 1.3074 6 6 3.5648 1.4444 -0.1257 7 1 3.9994 0.9053 0.7161 8 8 3.9429 0.8055 -1.3467 9 6 4.0749 2.8868 -0.1250 10 7 5.5349 2.8885 -0.2460 11 16 6.3331 4.2907 -0.6192 12 8 7.7204 3.9858 -0.5778 13 8 5.6889 4.8258 -1.7672 14 6 6.0339 5.4266 0.6941 15 6 5.3056 6.5718 0.4644 16 6 5.0683 7.4669 1.4958 17 6 5.5606 7.2208 2.7685 18 6 6.2921 6.0830 3.0208 19 6 6.5335 5.1637 1.9828 20 6 7.2776 3.9875 2.2319 21 1 7.0986 3.1003 1.6425 22 6 8.2459 3.9729 3.2421 23 7 8.6246 5.0932 3.8014 24 14 8.9978 2.3536 3.7919 25 1 8.4033 1.2407 3.0089 26 1 10.4654 2.3881 3.5682 27 1 8.7219 2.1449 5.2360 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.0699 1.5875 2.1492 34 1 1.9989 3.1541 1.3076 35 1 0.5489 2.1252 1.3970 36 1 3.5906 1.2327 -2.1396 37 1 3.6402 3.4262 -0.9667 38 1 3.7865 3.3738 0.8065 39 1 6.0340 2.0685 -0.1074 40 1 4.9170 6.7733 -0.5228 41 1 4.4955 8.3627 1.3068 42 1 5.3700 7.9253 3.5646 43 1 6.6750 5.8935 4.0126 44 1 9.2956 5.0831 4.5019 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619572635.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:47 Heat of formation + Delta-G solvation = -132.608970 kcal Electronic energy + Delta-G solvation = -26934.139223 eV Core-core repulsion = 23170.165341 eV Total energy + Delta-G solvation = -3763.973882 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -38.79177 -37.60340 -36.20092 -35.07517 -34.81202 -34.10381 -33.83701 -30.42730 -30.21701 -29.56498 -26.96642 -25.56389 -25.00093 -21.98500 -21.66065 -21.13897 -20.43239 -18.54006 -17.71648 -17.00510 -16.76291 -16.17774 -15.65487 -15.46075 -15.00418 -14.85487 -14.34909 -14.14502 -14.04978 -13.62905 -13.26123 -13.22654 -13.07396 -12.77683 -12.47555 -12.12972 -11.87175 -11.80696 -11.61780 -11.53621 -11.28586 -11.25286 -11.18697 -11.17492 -11.06155 -10.99743 -10.73912 -10.71203 -10.49817 -10.48071 -9.91352 -9.77496 -9.46608 -9.41602 -8.73103 -8.05180 -7.61913 -7.04047 -4.77403 1.54706 2.32195 2.71013 2.96920 3.03156 3.09549 3.76996 3.90856 4.37618 4.41520 4.53872 4.74324 4.76859 4.86956 5.13433 5.19915 5.27322 5.38971 5.40493 5.45988 5.58738 5.64174 5.74022 5.85872 5.89008 5.95944 5.98010 6.03061 6.05853 6.22241 6.26826 6.28609 6.38122 6.42534 6.76745 6.94164 7.07352 7.29455 7.47499 7.54665 7.65181 7.71269 7.79354 7.88214 8.27861 8.49240 8.63534 9.88689 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.010966 B = 0.004785 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.767401 B = 5850.155753 C = 6451.111969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.115 4.115 3 C -0.122 4.122 4 H 0.075 0.925 5 C -0.155 4.155 6 C 0.105 3.895 7 H 0.106 0.894 8 O -0.556 6.556 9 C 0.091 3.909 10 N -1.116 6.116 11 S 2.701 3.299 12 O -0.964 6.964 13 O -1.001 7.001 14 C -0.776 4.776 15 C -0.004 4.004 16 C -0.251 4.251 17 C -0.077 4.077 18 C -0.158 4.158 19 C 0.186 3.814 20 C -0.444 4.444 21 H 0.088 0.912 22 C 0.080 3.920 23 N -0.776 5.776 24 Si 0.916 3.084 25 H -0.254 1.254 26 H -0.268 1.268 27 H -0.270 1.270 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.374 0.626 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.413 0.587 40 H 0.107 0.893 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.125 0.875 44 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.492 -7.441 -1.920 13.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C -0.141 4.141 4 H 0.093 0.907 5 C -0.212 4.212 6 C 0.045 3.955 7 H 0.123 0.877 8 O -0.361 6.361 9 C -0.036 4.036 10 N -0.873 5.873 11 S 2.799 3.201 12 O -0.955 6.955 13 O -0.991 6.991 14 C -0.872 4.872 15 C -0.023 4.023 16 C -0.271 4.271 17 C -0.096 4.096 18 C -0.178 4.178 19 C 0.181 3.819 20 C -0.472 4.472 21 H 0.106 0.894 22 C -0.141 4.141 23 N -0.399 5.399 24 Si 0.739 3.261 25 H -0.178 1.178 26 H -0.193 1.193 27 H -0.195 1.195 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.221 0.779 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.247 0.753 40 H 0.125 0.875 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.143 0.857 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.607 -7.465 -2.158 13.149 hybrid contribution 0.019 -0.080 0.822 0.826 sum -10.587 -7.545 -1.336 13.069 Atomic orbital electron populations 1.21830 0.96128 1.01324 1.01796 1.21490 0.95388 0.95829 1.02593 1.21851 0.95590 0.97164 0.99523 0.90696 1.21951 1.01516 1.01166 0.96605 1.22195 0.92987 0.92278 0.88057 0.87665 1.86568 1.77181 1.56718 1.15604 1.21910 0.80940 0.98162 1.02622 1.55528 1.14364 1.27281 1.90135 1.01053 0.72785 0.72614 0.73691 1.93545 1.30531 1.83780 1.87625 1.93434 1.77534 1.79325 1.48795 1.29883 1.27175 1.15927 1.14172 1.20249 0.92694 0.92098 0.97310 1.20489 1.10656 1.01557 0.94400 1.20905 0.96497 0.96537 0.95666 1.21525 1.00730 0.95618 0.99887 1.17011 0.85271 0.91309 0.88305 1.19897 1.14944 0.98164 1.14237 0.89408 1.25954 0.95573 0.98468 0.94111 1.69782 1.23189 1.27777 1.19194 0.86112 0.79635 0.81405 0.78940 1.17754 1.19293 1.19480 0.92913 0.93038 0.92550 0.91257 0.92034 0.92233 0.91657 0.92254 0.77915 0.90838 0.90526 0.75257 0.87497 0.88777 0.88842 0.85699 0.90179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.67 37.16 0.36 -0.85 16 2 C -0.12 -1.04 5.33 -26.73 -0.14 -1.18 16 3 C -0.12 -1.17 2.16 -90.62 -0.20 -1.37 16 4 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 5 C -0.16 -1.51 8.60 37.16 0.32 -1.19 16 6 C 0.11 1.23 2.63 -26.73 -0.07 1.16 16 7 H 0.11 1.28 8.14 -51.93 -0.42 0.85 16 8 O -0.56 -6.66 12.44 -35.23 -0.44 -7.10 16 9 C 0.09 1.30 5.50 -4.04 -0.02 1.28 16 10 N -1.12 -19.36 5.00 -10.61 -0.05 -19.42 16 11 S 2.70 59.05 4.96 -107.50 -0.53 58.51 16 12 O -0.96 -24.27 16.52 -57.17 -0.94 -25.21 16 13 O -1.00 -22.64 16.53 -57.17 -0.94 -23.59 16 14 C -0.78 -18.38 5.90 -38.87 -0.23 -18.61 16 15 C 0.00 -0.08 9.54 -39.66 -0.38 -0.46 16 16 C -0.25 -5.41 10.05 -39.29 -0.39 -5.81 16 17 C -0.08 -1.71 10.02 -39.66 -0.40 -2.11 16 18 C -0.16 -3.85 8.66 -38.87 -0.34 -4.19 16 19 C 0.19 4.68 5.55 -106.82 -0.59 4.08 16 20 C -0.44 -11.05 7.63 -37.75 -0.29 -11.34 16 21 H 0.09 2.05 5.83 -52.48 -0.31 1.74 16 22 C 0.08 1.92 5.24 -17.35 -0.09 1.82 16 23 N -0.78 -18.99 10.85 55.55 0.60 -18.39 16 24 Si 0.92 17.99 29.58 -169.99 -5.03 12.96 16 25 H -0.25 -4.88 7.11 56.52 0.40 -4.48 16 26 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 27 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.43 6.56 -51.93 -0.34 0.09 16 31 H 0.07 0.65 7.54 -51.93 -0.39 0.26 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.69 6.43 -51.93 -0.33 0.36 16 35 H 0.06 0.51 6.56 -51.93 -0.34 0.17 16 36 H 0.37 3.45 9.05 45.56 0.41 3.87 16 37 H 0.07 1.01 7.82 -51.93 -0.41 0.61 16 38 H 0.08 1.11 6.43 -51.93 -0.33 0.78 16 39 H 0.41 6.75 8.48 -34.47 -0.29 6.45 16 40 H 0.11 2.22 7.32 -52.49 -0.38 1.84 16 41 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 42 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 43 H 0.13 3.08 6.22 -52.49 -0.33 2.75 16 44 H 0.29 6.30 8.30 -40.82 -0.34 5.96 16 LS Contribution 365.17 15.07 5.50 5.50 Total: -1.00 -30.71 365.17 -9.86 -40.57 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: -5.56 Total: 14.92 kcal Atomic # 6 Polarization: -36.30 SS G_CDS: -2.46 Total: -38.76 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.55 Total: -37.81 kcal Atomic # 8 Polarization: -53.57 SS G_CDS: -2.33 Total: -55.90 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.96 kcal Atomic # 16 Polarization: 59.05 SS G_CDS: -0.53 Total: 58.51 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.71 -9.86 -40.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619572635.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.043 kcal (2) G-P(sol) polarization free energy of solvation -30.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds