Wall clock time and date at job start Tue Mar 31 2020 15:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46966 * 2 1 4 4 H 1.09000 * 109.47702 * 305.00395 * 3 2 1 5 5 C 1.53003 * 109.47118 * 65.00098 * 3 2 1 6 6 C 1.53000 * 109.47130 * 184.99818 * 3 2 1 7 7 H 1.09000 * 109.47033 * 300.00343 * 6 3 2 8 8 O 1.42898 * 109.46984 * 60.00164 * 6 3 2 9 9 C 1.52998 * 109.47509 * 180.02562 * 6 3 2 10 10 N 1.46501 * 109.47152 * 180.02562 * 9 6 3 11 11 S 1.65603 * 119.99473 * 165.98003 * 10 9 6 12 12 O 1.42106 * 106.39751 * 176.34600 * 11 10 9 13 13 O 1.42095 * 106.40599 * 309.26610 * 11 10 9 14 14 C 1.76199 * 107.21913 * 62.81000 * 11 10 9 15 15 C 1.37640 * 120.12259 * 245.81282 * 14 11 10 16 16 C 1.38614 * 120.24462 * 179.97438 * 15 14 11 17 17 C 1.38664 * 120.50277 * 0.02562 * 16 15 14 18 18 C 1.37598 * 120.24814 * 0.02562 * 17 16 15 19 19 C 1.40697 * 120.12658 * 65.54089 * 14 11 10 20 20 C 1.41390 * 120.24707 * 359.97438 * 19 14 11 21 21 H 1.08004 * 119.99867 * 331.43011 * 20 19 14 22 22 C 1.39942 * 120.00032 * 151.43037 * 20 19 14 23 23 N 1.30818 * 120.00310 * 348.42714 * 22 20 19 24 24 Si 1.86806 * 120.00034 * 168.42953 * 22 20 19 25 25 H 1.48495 * 109.47078 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47097 * 119.99920 * 24 22 20 27 27 H 1.48502 * 109.46796 * 239.99585 * 24 22 20 28 28 H 1.08997 * 109.47234 * 59.99572 * 1 2 3 29 29 H 1.08997 * 109.47171 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46916 * 299.99924 * 1 2 3 31 31 H 1.09002 * 109.46916 * 240.00075 * 2 1 3 32 32 H 1.08999 * 109.46984 * 119.99942 * 2 1 3 33 33 H 1.09003 * 109.47113 * 60.00147 * 5 3 2 34 34 H 1.09002 * 109.47537 * 179.97438 * 5 3 2 35 35 H 1.08997 * 109.47159 * 300.00247 * 5 3 2 36 36 H 0.96705 * 113.99943 * 59.99765 * 8 6 3 37 37 H 1.09003 * 109.46500 * 300.00284 * 9 6 3 38 38 H 1.09002 * 109.47146 * 59.99691 * 9 6 3 39 39 H 0.96993 * 120.00232 * 345.97558 * 10 9 6 40 40 H 1.07993 * 119.88080 * 0.02562 * 15 14 11 41 41 H 1.07995 * 119.74927 * 180.02562 * 16 15 14 42 42 H 1.07998 * 119.87795 * 179.97438 * 17 16 15 43 43 H 1.07996 * 120.12951 * 179.97438 * 18 17 16 44 44 H 0.97003 * 120.00703 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 1.6352 2.1265 1.3074 6 6 3.5648 1.4444 -0.1257 7 1 3.9994 0.9053 0.7161 8 8 3.9429 0.8055 -1.3467 9 6 4.0749 2.8868 -0.1250 10 7 5.5349 2.8885 -0.2460 11 16 6.3331 4.2907 -0.6192 12 8 7.7204 3.9858 -0.5778 13 8 5.6889 4.8258 -1.7672 14 6 6.0339 5.4266 0.6941 15 6 5.3056 6.5718 0.4644 16 6 5.0683 7.4669 1.4958 17 6 5.5606 7.2208 2.7685 18 6 6.2921 6.0830 3.0208 19 6 6.5335 5.1637 1.9828 20 6 7.2776 3.9875 2.2319 21 1 7.0986 3.1003 1.6425 22 6 8.2459 3.9729 3.2421 23 7 8.6246 5.0932 3.8014 24 14 8.9978 2.3536 3.7919 25 1 8.4033 1.2407 3.0089 26 1 10.4654 2.3881 3.5682 27 1 8.7219 2.1449 5.2360 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.0699 1.5875 2.1492 34 1 1.9989 3.1541 1.3076 35 1 0.5489 2.1252 1.3970 36 1 3.5906 1.2327 -2.1396 37 1 3.6402 3.4262 -0.9667 38 1 3.7865 3.3738 0.8065 39 1 6.0340 2.0685 -0.1074 40 1 4.9170 6.7733 -0.5228 41 1 4.4955 8.3627 1.3068 42 1 5.3700 7.9253 3.5646 43 1 6.6750 5.8935 4.0126 44 1 9.2956 5.0831 4.5019 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619572635.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:46 Heat of formation + Delta-G solvation = -154.367922 kcal Electronic energy + Delta-G solvation = -26935.082762 eV Core-core repulsion = 23170.165341 eV Total energy + Delta-G solvation = -3764.917421 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.73832 -39.37231 -38.02018 -36.66006 -35.97039 -35.68636 -35.24917 -32.02834 -31.37753 -31.20584 -27.97964 -27.34751 -25.86912 -23.44276 -23.03084 -22.82813 -21.27286 -20.15311 -19.50643 -18.47489 -18.17817 -17.62828 -17.13433 -16.82149 -16.39989 -16.02230 -15.76996 -15.54930 -15.14944 -14.93646 -14.91130 -14.48082 -14.43792 -14.07396 -13.68774 -13.36835 -13.28159 -13.06811 -12.99205 -12.94226 -12.84364 -12.80660 -12.70087 -12.53744 -12.47407 -12.35727 -12.11152 -12.02584 -11.65229 -11.45430 -11.30317 -11.20688 -11.14149 -10.75210 -10.16092 -9.83904 -9.43082 -8.79842 -6.61672 -0.15927 0.52845 0.96840 1.36173 1.48948 1.51310 2.15289 2.35252 2.63177 2.99145 3.43472 3.52978 3.64054 3.87710 3.91037 4.05795 4.22391 4.32916 4.35275 4.50647 4.58348 4.60158 4.64766 4.71995 4.75667 4.83630 4.91356 5.00038 5.11448 5.14998 5.16341 5.21621 5.25303 5.30320 5.31833 5.52050 5.54571 5.60096 5.70829 5.82928 6.00824 6.08285 6.21491 6.47875 6.67734 6.83465 6.86366 8.16150 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.010966 B = 0.004785 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.767401 B = 5850.155753 C = 6451.111969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C -0.114 4.114 4 H 0.085 0.915 5 C -0.156 4.156 6 C 0.114 3.886 7 H 0.101 0.899 8 O -0.566 6.566 9 C 0.084 3.916 10 N -1.105 6.105 11 S 2.720 3.280 12 O -1.002 7.002 13 O -1.009 7.009 14 C -0.792 4.792 15 C -0.016 4.016 16 C -0.249 4.249 17 C -0.075 4.075 18 C -0.185 4.185 19 C 0.162 3.838 20 C -0.474 4.474 21 H 0.092 0.908 22 C 0.039 3.961 23 N -0.808 5.808 24 Si 0.975 3.025 25 H -0.249 1.249 26 H -0.269 1.269 27 H -0.253 1.253 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.386 0.614 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.419 0.581 40 H 0.123 0.877 41 H 0.128 0.872 42 H 0.122 0.878 43 H 0.115 0.885 44 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.985 -8.077 -2.004 15.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.134 4.134 4 H 0.103 0.897 5 C -0.213 4.213 6 C 0.053 3.947 7 H 0.118 0.882 8 O -0.373 6.373 9 C -0.042 4.042 10 N -0.865 5.865 11 S 2.816 3.184 12 O -0.993 6.993 13 O -1.000 7.000 14 C -0.886 4.886 15 C -0.036 4.036 16 C -0.269 4.269 17 C -0.094 4.094 18 C -0.205 4.205 19 C 0.158 3.842 20 C -0.502 4.502 21 H 0.110 0.890 22 C -0.179 4.179 23 N -0.432 5.432 24 Si 0.794 3.206 25 H -0.172 1.172 26 H -0.194 1.194 27 H -0.177 1.177 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.235 0.765 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.255 0.745 40 H 0.140 0.860 41 H 0.146 0.854 42 H 0.140 0.860 43 H 0.132 0.868 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.117 -8.077 -2.242 14.734 hybrid contribution 0.392 0.202 0.782 0.898 sum -11.725 -7.876 -1.459 14.199 Atomic orbital electron populations 1.21811 0.95053 1.01865 1.02132 1.21452 0.96269 0.95024 1.02239 1.21791 0.93795 0.97902 0.99870 0.89656 1.21962 1.02408 1.00412 0.96548 1.22108 0.94338 0.90188 0.88018 0.88161 1.86546 1.77591 1.56937 1.16185 1.22198 0.78869 1.00346 1.02834 1.55156 1.15754 1.25817 1.89810 1.00342 0.71964 0.72927 0.73147 1.93487 1.33303 1.84470 1.88013 1.93412 1.77483 1.80006 1.49065 1.30156 1.27117 1.17148 1.14187 1.20573 0.92612 0.91942 0.98444 1.20897 1.09997 1.02265 0.93774 1.21255 0.95147 0.96094 0.96919 1.21580 1.02387 0.97019 0.99532 1.17310 0.85889 0.91951 0.89078 1.20169 1.15972 0.98536 1.15516 0.88984 1.26786 0.95669 1.01603 0.93818 1.69817 1.23990 1.29482 1.19901 0.85253 0.78465 0.77512 0.79356 1.17203 1.19415 1.17741 0.92463 0.92460 0.92308 0.91595 0.92442 0.92548 0.92717 0.90873 0.76497 0.90109 0.90783 0.74530 0.85960 0.85449 0.85981 0.86764 0.89398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.67 71.98 0.70 -1.35 16 2 C -0.11 -1.81 5.33 30.59 0.16 -1.65 16 3 C -0.11 -2.00 2.16 -10.79 -0.02 -2.02 16 4 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 5 C -0.16 -2.81 8.60 71.98 0.62 -2.19 16 6 C 0.11 2.53 2.63 30.59 0.08 2.61 16 7 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 8 O -0.57 -12.69 12.44 -148.98 -1.85 -14.54 16 9 C 0.08 2.33 5.50 86.38 0.48 2.80 16 10 N -1.10 -38.03 5.00 -187.48 -0.94 -38.97 16 11 S 2.72 119.20 4.96 -56.49 -0.28 118.92 16 12 O -1.00 -51.30 16.52 -128.00 -2.11 -53.41 16 13 O -1.01 -45.10 16.53 -128.00 -2.12 -47.21 16 14 C -0.79 -37.65 5.90 22.73 0.13 -37.51 16 15 C -0.02 -0.70 9.54 22.22 0.21 -0.49 16 16 C -0.25 -10.30 10.05 22.46 0.23 -10.07 16 17 C -0.08 -3.26 10.02 22.22 0.22 -3.04 16 18 C -0.19 -9.16 8.66 22.73 0.20 -8.96 16 19 C 0.16 8.30 5.55 -21.29 -0.12 8.18 16 20 C -0.47 -24.02 7.63 23.46 0.18 -23.84 16 21 H 0.09 4.39 5.83 -2.91 -0.02 4.37 16 22 C 0.04 1.89 5.24 85.26 0.45 2.34 16 23 N -0.81 -40.29 10.85 21.82 0.24 -40.06 16 24 Si 0.97 36.77 29.58 68.60 2.03 38.80 16 25 H -0.25 -9.06 7.11 99.48 0.71 -8.35 16 26 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 27 H -0.25 -8.80 7.11 99.48 0.71 -8.09 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.77 6.56 -2.39 -0.02 0.75 16 31 H 0.07 1.12 7.54 -2.39 -0.02 1.10 16 32 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.05 1.10 6.43 -2.39 -0.02 1.08 16 35 H 0.07 1.11 6.56 -2.39 -0.02 1.09 16 36 H 0.39 6.43 9.05 -74.05 -0.67 5.76 16 37 H 0.08 2.13 7.82 -2.39 -0.02 2.11 16 38 H 0.07 2.12 6.43 -2.39 -0.02 2.10 16 39 H 0.42 13.59 8.48 -96.75 -0.82 12.77 16 40 H 0.12 4.90 7.32 -2.91 -0.02 4.88 16 41 H 0.13 4.36 8.06 -2.91 -0.02 4.33 16 42 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 43 H 0.11 5.79 6.22 -2.91 -0.02 5.77 16 44 H 0.29 13.15 8.30 -92.71 -0.77 12.38 16 Total: -1.00 -65.57 365.17 -1.98 -67.55 By element: Atomic # 1 Polarization: 44.57 SS G_CDS: -0.46 Total: 44.11 kcal Atomic # 6 Polarization: -78.70 SS G_CDS: 3.51 Total: -75.19 kcal Atomic # 7 Polarization: -78.32 SS G_CDS: -0.70 Total: -79.02 kcal Atomic # 8 Polarization: -109.08 SS G_CDS: -6.08 Total: -115.17 kcal Atomic # 14 Polarization: 36.77 SS G_CDS: 2.03 Total: 38.80 kcal Atomic # 16 Polarization: 119.20 SS G_CDS: -0.28 Total: 118.92 kcal Total: -65.57 -1.98 -67.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619572635.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.817 kcal (2) G-P(sol) polarization free energy of solvation -65.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds