Wall clock time and date at job start Tue Mar 31 2020 15:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.46970 * 2 1 4 4 H 1.09000 * 109.47654 * 305.47176 * 3 2 1 5 5 N 1.46502 * 109.47397 * 65.46832 * 3 2 1 6 6 S 1.65598 * 120.00232 * 215.89256 * 5 3 2 7 7 O 1.42103 * 104.27503 * 181.34253 * 6 5 3 8 8 O 1.42093 * 104.28071 * 309.20192 * 6 5 3 9 9 C 1.81401 * 104.44594 * 65.27505 * 6 5 3 10 10 C 1.53002 * 109.46998 * 184.77675 * 9 6 5 11 11 C 1.50701 * 109.47332 * 179.97438 * 10 9 6 12 12 H 1.07999 * 119.99751 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99946 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99813 * 179.97438 * 13 11 10 15 15 Si 1.86799 * 120.00142 * 359.97438 * 13 11 10 16 16 H 1.48498 * 109.46912 * 89.99938 * 15 13 11 17 17 H 1.48500 * 109.47079 * 209.99873 * 15 13 11 18 18 H 1.48497 * 109.47171 * 330.00272 * 15 13 11 19 19 C 1.50699 * 109.47169 * 185.47089 * 3 2 1 20 20 C 1.38163 * 120.02698 * 265.00098 * 19 3 2 21 21 C 1.38249 * 120.05558 * 179.97438 * 20 19 3 22 22 C 1.38289 * 120.11028 * 0.02562 * 21 20 19 23 23 C 1.38122 * 120.05638 * 0.02562 * 22 21 20 24 24 C 1.38708 * 120.02887 * 85.02130 * 19 3 2 25 25 O 1.35898 * 120.05711 * 359.95517 * 24 19 3 26 26 C 1.42900 * 117.00226 * 180.02562 * 25 24 19 27 27 H 1.08995 * 109.47446 * 64.78188 * 1 2 3 28 28 H 1.09000 * 109.47339 * 184.78191 * 1 2 3 29 29 H 1.08999 * 109.47489 * 304.77743 * 1 2 3 30 30 H 1.08997 * 109.46990 * 240.00086 * 2 1 3 31 31 H 1.08999 * 109.46927 * 120.00161 * 2 1 3 32 32 H 0.97009 * 119.99466 * 35.89931 * 5 3 2 33 33 H 1.08998 * 109.47331 * 304.77151 * 9 6 5 34 34 H 1.08996 * 109.47286 * 64.77603 * 9 6 5 35 35 H 1.09009 * 109.47074 * 299.99932 * 10 9 6 36 36 H 1.09002 * 109.46913 * 59.99452 * 10 9 6 37 37 H 0.96998 * 120.00162 * 179.97438 * 14 13 11 38 38 H 1.07997 * 119.97432 * 0.02562 * 20 19 3 39 39 H 1.07998 * 119.94305 * 180.02562 * 21 20 19 40 40 H 1.07998 * 119.97310 * 179.74233 * 22 21 20 41 41 H 1.07995 * 120.02642 * 179.97438 * 23 22 21 42 42 H 1.08998 * 109.47193 * 60.00216 * 26 25 24 43 43 H 1.09006 * 109.46764 * 180.02562 * 26 25 24 44 44 H 1.08997 * 109.46762 * 299.99883 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5989 1.9839 -0.8369 5 7 1.6621 2.0941 1.2565 6 16 1.2441 3.6964 1.2653 7 8 0.9770 3.9814 2.6316 8 8 2.3076 4.3399 0.5770 9 6 -0.2832 3.7710 0.2893 10 6 -0.7109 5.2305 0.1222 11 6 -1.9793 5.2926 -0.6891 12 1 -2.4350 4.3821 -1.0492 13 6 -2.5585 6.5117 -0.9708 14 7 -3.6651 6.5659 -1.6793 15 14 -1.7713 8.0864 -0.3461 16 1 -0.8063 8.5916 -1.3554 17 1 -2.8241 9.1075 -0.1133 18 1 -1.0578 7.8119 0.9270 19 6 3.5409 1.4447 -0.1355 20 6 4.3367 1.5120 0.9919 21 6 5.7137 1.5135 0.8684 22 6 6.2980 1.4482 -0.3833 23 6 5.5067 1.3819 -1.5135 24 6 4.1245 1.3795 -1.3921 25 8 3.3439 1.3127 -2.5025 26 6 4.0134 1.2474 -3.7633 27 1 -0.3634 0.4378 -0.9297 28 1 -0.3634 -1.0241 0.0857 29 1 -0.3634 0.5861 0.8441 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6568 1.5868 2.0834 33 1 -0.1094 3.3288 -0.6917 34 1 -1.0699 3.2183 0.8027 35 1 -0.8846 5.6728 1.1033 36 1 0.0760 5.7832 -0.3912 37 1 -4.0728 7.4235 -1.8772 38 1 3.8828 1.5626 1.9706 39 1 6.3340 1.5658 1.7509 40 1 7.3738 1.4538 -0.4775 41 1 5.9635 1.3313 -2.4908 42 1 4.6436 0.3586 -3.7944 43 1 3.2757 1.1985 -4.5643 44 1 4.6315 2.1358 -3.8928 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732217810.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:00 Heat of formation + Delta-G solvation = -94.829440 kcal Electronic energy + Delta-G solvation = -26722.329493 eV Core-core repulsion = 22959.993854 eV Total energy + Delta-G solvation = -3762.335638 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.45420 -37.85941 -36.70750 -36.42448 -35.49135 -33.92658 -31.78254 -31.44448 -31.04493 -30.16580 -27.43395 -25.96613 -25.90386 -22.46034 -22.17117 -21.26112 -20.93475 -19.02971 -18.24014 -17.62144 -16.88440 -16.51407 -16.26812 -15.83161 -15.53649 -15.34419 -14.85381 -14.54236 -14.32538 -14.12665 -13.99438 -13.69775 -13.59872 -13.05301 -12.77829 -12.56367 -12.28022 -11.93934 -11.90202 -11.84888 -11.66016 -11.55374 -11.55086 -11.25965 -11.25118 -11.17005 -11.07632 -10.96476 -10.90997 -10.41671 -10.13739 -9.82018 -9.48736 -9.17772 -8.90082 -8.64124 -8.21031 -6.14549 -4.15356 0.71443 1.24890 1.38033 3.05405 3.17366 3.28275 3.35368 3.40031 3.67512 4.16729 4.37878 4.48394 4.65122 4.75606 4.81214 4.92797 4.93848 5.01644 5.03675 5.14011 5.17399 5.22314 5.30156 5.36080 5.49175 5.52928 5.57491 5.61841 5.69409 5.79563 5.85737 5.97111 6.06994 6.23044 6.26801 6.33169 6.39757 6.51151 6.69786 6.84984 6.95380 7.08495 7.28452 7.57182 8.38997 8.86912 9.45439 10.97864 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.014108 B = 0.003876 C = 0.003760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.234744 B = 7222.335999 C = 7444.103585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.118 4.118 3 C 0.203 3.797 4 H 0.099 0.901 5 N -1.118 6.118 6 S 2.585 3.415 7 O -0.969 6.969 8 O -0.957 6.957 9 C -0.584 4.584 10 C -0.006 4.006 11 C -0.517 4.517 12 H 0.078 0.922 13 C 0.072 3.928 14 N -0.896 5.896 15 Si 0.868 3.132 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.262 1.262 19 C -0.120 4.120 20 C -0.064 4.064 21 C -0.158 4.158 22 C -0.084 4.084 23 C -0.209 4.209 24 C 0.136 3.864 25 O -0.313 6.313 26 C 0.027 3.973 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.413 0.587 33 H 0.124 0.876 34 H 0.127 0.873 35 H 0.030 0.970 36 H 0.029 0.971 37 H 0.266 0.734 38 H 0.127 0.873 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.127 0.873 42 H 0.053 0.947 43 H 0.101 0.899 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.483 -16.277 0.759 23.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.157 4.157 3 C 0.095 3.905 4 H 0.117 0.883 5 N -0.874 5.874 6 S 2.682 3.318 7 O -0.960 6.960 8 O -0.947 6.947 9 C -0.717 4.717 10 C -0.046 4.046 11 C -0.556 4.556 12 H 0.096 0.904 13 C -0.131 4.131 14 N -0.534 5.534 15 Si 0.695 3.305 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.187 1.187 19 C -0.122 4.122 20 C -0.082 4.082 21 C -0.176 4.176 22 C -0.102 4.102 23 C -0.227 4.227 24 C 0.090 3.910 25 O -0.226 6.226 26 C -0.068 4.068 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.246 0.754 33 H 0.143 0.857 34 H 0.146 0.854 35 H 0.048 0.952 36 H 0.047 0.953 37 H 0.076 0.924 38 H 0.145 0.855 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.145 0.855 42 H 0.072 0.928 43 H 0.119 0.881 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 17.641 -15.370 0.942 23.416 hybrid contribution 0.145 0.387 0.010 0.413 sum 17.786 -14.983 0.952 23.275 Atomic orbital electron populations 1.21844 0.94853 1.01954 1.02913 1.21759 0.96588 0.94469 1.02896 1.19461 0.89869 0.95244 0.85903 0.88281 1.55890 1.84743 1.31624 1.15162 1.05757 0.77825 0.72637 0.75568 1.93557 1.86920 1.82587 1.32900 1.93576 1.51915 1.73057 1.76155 1.30317 1.18228 1.09081 1.14059 1.19402 0.99229 0.87204 0.98728 1.20849 1.06568 0.94926 1.33293 0.90366 1.24974 0.94641 0.99044 0.94406 1.69880 1.19072 1.25930 1.38528 0.86939 0.79639 0.83507 0.80453 1.19676 1.20768 1.18667 1.19550 0.96319 1.05869 0.90478 1.20777 0.93145 0.96456 0.97834 1.21028 0.94812 1.04286 0.97501 1.20892 0.99426 0.97791 0.92114 1.21166 0.92403 1.09347 0.99829 1.18760 0.89499 0.96293 0.86399 1.86080 1.34976 1.88251 1.13268 1.23068 0.99103 1.01134 0.83461 0.91999 0.92500 0.92070 0.90506 0.91373 0.75355 0.85731 0.85448 0.95165 0.95260 0.92418 0.85511 0.86025 0.86044 0.85534 0.92825 0.88060 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.86 37.16 0.37 -1.20 16 2 C -0.12 -1.16 5.52 -26.73 -0.15 -1.30 16 3 C 0.20 2.51 2.00 -69.09 -0.14 2.37 16 4 H 0.10 1.33 6.64 -51.93 -0.35 0.98 16 5 N -1.12 -14.18 3.61 -5.88 -0.02 -14.20 16 6 S 2.59 45.01 5.37 -107.50 -0.58 44.43 16 7 O -0.97 -19.19 18.08 -57.54 -1.04 -20.23 16 8 O -0.96 -19.49 17.81 -57.54 -1.02 -20.52 16 9 C -0.58 -10.88 5.94 37.16 0.22 -10.66 16 10 C -0.01 -0.15 4.05 -27.88 -0.11 -0.27 16 11 C -0.52 -14.52 9.66 -34.44 -0.33 -14.85 16 12 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 13 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 14 N -0.90 -27.16 13.96 55.43 0.77 -26.38 16 15 Si 0.87 21.70 27.47 -169.99 -4.67 17.03 16 16 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 19 C -0.12 -1.56 5.07 -104.48 -0.53 -2.09 16 20 C -0.06 -0.78 9.32 -39.60 -0.37 -1.15 16 21 C -0.16 -1.74 10.04 -39.56 -0.40 -2.14 16 22 C -0.08 -0.87 10.04 -39.61 -0.40 -1.27 16 23 C -0.21 -2.29 9.04 -39.43 -0.36 -2.65 16 24 C 0.14 1.74 6.66 -39.22 -0.26 1.48 16 25 O -0.31 -3.78 9.63 -19.42 -0.19 -3.97 16 26 C 0.03 0.22 9.81 101.05 0.99 1.22 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.61 7.64 -51.93 -0.40 0.21 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.41 4.14 8.54 -34.48 -0.29 3.84 16 33 H 0.12 2.12 7.35 -51.93 -0.38 1.73 16 34 H 0.13 2.15 8.14 -51.93 -0.42 1.73 16 35 H 0.03 0.73 7.20 -51.92 -0.37 0.35 16 36 H 0.03 0.70 7.57 -51.93 -0.39 0.31 16 37 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 38 H 0.13 1.38 7.09 -52.49 -0.37 1.00 16 39 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 40 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 41 H 0.13 1.08 6.30 -52.49 -0.33 0.75 16 42 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 43 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 LS Contribution 374.08 15.07 5.64 5.64 Total: -1.00 -35.98 374.08 -9.32 -45.31 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -6.65 Total: 3.41 kcal Atomic # 6 Polarization: -28.96 SS G_CDS: -1.56 Total: -30.52 kcal Atomic # 7 Polarization: -41.33 SS G_CDS: 0.75 Total: -40.58 kcal Atomic # 8 Polarization: -42.47 SS G_CDS: -2.25 Total: -44.72 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Atomic # 16 Polarization: 45.01 SS G_CDS: -0.58 Total: 44.43 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.98 -9.32 -45.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732217810.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.523 kcal (2) G-P(sol) polarization free energy of solvation -35.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds