Wall clock time and date at job start Tue Mar 31 2020 15:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.46970 * 2 1 4 4 H 1.09000 * 109.47654 * 305.47176 * 3 2 1 5 5 N 1.46502 * 109.47397 * 65.46832 * 3 2 1 6 6 S 1.65598 * 120.00232 * 215.89256 * 5 3 2 7 7 O 1.42103 * 104.27503 * 181.34253 * 6 5 3 8 8 O 1.42093 * 104.28071 * 309.20192 * 6 5 3 9 9 C 1.81401 * 104.44594 * 65.27505 * 6 5 3 10 10 C 1.53002 * 109.46998 * 184.77675 * 9 6 5 11 11 C 1.50701 * 109.47332 * 179.97438 * 10 9 6 12 12 H 1.07999 * 119.99751 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99946 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99813 * 179.97438 * 13 11 10 15 15 Si 1.86799 * 120.00142 * 359.97438 * 13 11 10 16 16 H 1.48498 * 109.46912 * 89.99938 * 15 13 11 17 17 H 1.48500 * 109.47079 * 209.99873 * 15 13 11 18 18 H 1.48497 * 109.47171 * 330.00272 * 15 13 11 19 19 C 1.50699 * 109.47169 * 185.47089 * 3 2 1 20 20 C 1.38163 * 120.02698 * 265.00098 * 19 3 2 21 21 C 1.38249 * 120.05558 * 179.97438 * 20 19 3 22 22 C 1.38289 * 120.11028 * 0.02562 * 21 20 19 23 23 C 1.38122 * 120.05638 * 0.02562 * 22 21 20 24 24 C 1.38708 * 120.02887 * 85.02130 * 19 3 2 25 25 O 1.35898 * 120.05711 * 359.95517 * 24 19 3 26 26 C 1.42900 * 117.00226 * 180.02562 * 25 24 19 27 27 H 1.08995 * 109.47446 * 64.78188 * 1 2 3 28 28 H 1.09000 * 109.47339 * 184.78191 * 1 2 3 29 29 H 1.08999 * 109.47489 * 304.77743 * 1 2 3 30 30 H 1.08997 * 109.46990 * 240.00086 * 2 1 3 31 31 H 1.08999 * 109.46927 * 120.00161 * 2 1 3 32 32 H 0.97009 * 119.99466 * 35.89931 * 5 3 2 33 33 H 1.08998 * 109.47331 * 304.77151 * 9 6 5 34 34 H 1.08996 * 109.47286 * 64.77603 * 9 6 5 35 35 H 1.09009 * 109.47074 * 299.99932 * 10 9 6 36 36 H 1.09002 * 109.46913 * 59.99452 * 10 9 6 37 37 H 0.96998 * 120.00162 * 179.97438 * 14 13 11 38 38 H 1.07997 * 119.97432 * 0.02562 * 20 19 3 39 39 H 1.07998 * 119.94305 * 180.02562 * 21 20 19 40 40 H 1.07998 * 119.97310 * 179.74233 * 22 21 20 41 41 H 1.07995 * 120.02642 * 179.97438 * 23 22 21 42 42 H 1.08998 * 109.47193 * 60.00216 * 26 25 24 43 43 H 1.09006 * 109.46764 * 180.02562 * 26 25 24 44 44 H 1.08997 * 109.46762 * 299.99883 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5989 1.9839 -0.8369 5 7 1.6621 2.0941 1.2565 6 16 1.2441 3.6964 1.2653 7 8 0.9770 3.9814 2.6316 8 8 2.3076 4.3399 0.5770 9 6 -0.2832 3.7710 0.2893 10 6 -0.7109 5.2305 0.1222 11 6 -1.9793 5.2926 -0.6891 12 1 -2.4350 4.3821 -1.0492 13 6 -2.5585 6.5117 -0.9708 14 7 -3.6651 6.5659 -1.6793 15 14 -1.7713 8.0864 -0.3461 16 1 -0.8063 8.5916 -1.3554 17 1 -2.8241 9.1075 -0.1133 18 1 -1.0578 7.8119 0.9270 19 6 3.5409 1.4447 -0.1355 20 6 4.3367 1.5120 0.9919 21 6 5.7137 1.5135 0.8684 22 6 6.2980 1.4482 -0.3833 23 6 5.5067 1.3819 -1.5135 24 6 4.1245 1.3795 -1.3921 25 8 3.3439 1.3127 -2.5025 26 6 4.0134 1.2474 -3.7633 27 1 -0.3634 0.4378 -0.9297 28 1 -0.3634 -1.0241 0.0857 29 1 -0.3634 0.5861 0.8441 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6568 1.5868 2.0834 33 1 -0.1094 3.3288 -0.6917 34 1 -1.0699 3.2183 0.8027 35 1 -0.8846 5.6728 1.1033 36 1 0.0760 5.7832 -0.3912 37 1 -4.0728 7.4235 -1.8772 38 1 3.8828 1.5626 1.9706 39 1 6.3340 1.5658 1.7509 40 1 7.3738 1.4538 -0.4775 41 1 5.9635 1.3313 -2.4908 42 1 4.6436 0.3586 -3.7944 43 1 3.2757 1.1985 -4.5643 44 1 4.6315 2.1358 -3.8928 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732217810.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:59 Heat of formation + Delta-G solvation = -120.270358 kcal Electronic energy + Delta-G solvation = -26723.432694 eV Core-core repulsion = 22959.993854 eV Total energy + Delta-G solvation = -3763.438839 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.28072 -38.73731 -38.12722 -37.39271 -37.01528 -35.90099 -33.48735 -32.69296 -31.91428 -30.97107 -28.13122 -27.88436 -26.80078 -23.41669 -23.10252 -22.90378 -21.86488 -20.38335 -19.40411 -19.07437 -18.46140 -17.55332 -17.27078 -16.89599 -16.61836 -16.57193 -16.33950 -15.95487 -15.34806 -15.23489 -15.07155 -14.86795 -14.79135 -14.47408 -13.91434 -13.79831 -13.43276 -13.25322 -13.13552 -13.09111 -13.05865 -12.98428 -12.91847 -12.62653 -12.38832 -12.24944 -12.04345 -11.98690 -11.94113 -11.82039 -11.71990 -11.68143 -11.28709 -10.84219 -10.49231 -9.74894 -9.04960 -8.36266 -6.41587 -0.71865 0.40772 0.53689 1.31378 1.33054 1.43196 1.77791 2.29396 2.43384 2.73818 2.83488 2.97566 3.24330 3.67593 3.83598 3.94651 3.98246 4.03883 4.12849 4.17447 4.31011 4.34364 4.43457 4.47305 4.51108 4.56109 4.68751 4.74895 4.78471 4.82845 4.95170 5.05681 5.06677 5.10405 5.19875 5.27288 5.43419 5.46871 5.49453 5.56880 5.65550 5.90596 6.14029 6.17514 6.49389 6.64077 7.22560 8.79290 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.014108 B = 0.003876 C = 0.003760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.234744 B = 7222.335999 C = 7444.103585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.108 4.108 3 C 0.200 3.800 4 H 0.085 0.915 5 N -1.097 6.097 6 S 2.616 3.384 7 O -0.991 6.991 8 O -0.985 6.985 9 C -0.590 4.590 10 C -0.015 4.015 11 C -0.525 4.525 12 H 0.051 0.949 13 C 0.015 3.985 14 N -0.939 5.939 15 Si 0.922 3.078 16 H -0.262 1.262 17 H -0.272 1.272 18 H -0.251 1.251 19 C -0.142 4.142 20 C -0.082 4.082 21 C -0.167 4.167 22 C -0.087 4.087 23 C -0.214 4.214 24 C 0.117 3.883 25 O -0.333 6.333 26 C 0.018 3.982 27 H 0.049 0.951 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.428 0.572 33 H 0.136 0.864 34 H 0.143 0.857 35 H 0.031 0.969 36 H 0.030 0.970 37 H 0.270 0.730 38 H 0.134 0.866 39 H 0.142 0.858 40 H 0.149 0.851 41 H 0.148 0.852 42 H 0.072 0.928 43 H 0.113 0.887 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.607 -17.043 1.440 26.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.147 4.147 3 C 0.092 3.908 4 H 0.103 0.897 5 N -0.858 5.858 6 S 2.712 3.288 7 O -0.981 6.981 8 O -0.974 6.974 9 C -0.721 4.721 10 C -0.054 4.054 11 C -0.564 4.564 12 H 0.069 0.931 13 C -0.183 4.183 14 N -0.579 5.579 15 Si 0.745 3.255 16 H -0.186 1.186 17 H -0.197 1.197 18 H -0.175 1.175 19 C -0.144 4.144 20 C -0.100 4.100 21 C -0.185 4.185 22 C -0.105 4.105 23 C -0.233 4.233 24 C 0.071 3.929 25 O -0.247 6.247 26 C -0.076 4.076 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.265 0.735 33 H 0.154 0.846 34 H 0.161 0.839 35 H 0.049 0.951 36 H 0.048 0.952 37 H 0.079 0.921 38 H 0.152 0.848 39 H 0.160 0.840 40 H 0.167 0.833 41 H 0.166 0.834 42 H 0.091 0.909 43 H 0.131 0.869 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 19.760 -16.144 1.627 25.568 hybrid contribution -0.480 0.497 -0.270 0.742 sum 19.280 -15.647 1.357 24.867 Atomic orbital electron populations 1.21887 0.94973 1.02828 1.02227 1.21700 0.96310 0.92839 1.03871 1.19581 0.90135 0.96328 0.84714 0.89748 1.55383 1.83943 1.30081 1.16419 1.04609 0.76602 0.73389 0.74235 1.93522 1.87024 1.83698 1.33878 1.93541 1.52563 1.74685 1.76654 1.30315 1.20086 1.05995 1.15732 1.19355 0.97403 0.90840 0.97832 1.21153 1.07939 0.94010 1.33311 0.93113 1.25835 0.95165 1.02600 0.94718 1.70001 1.20674 1.27011 1.40167 0.86062 0.79251 0.79608 0.80556 1.18625 1.19731 1.17453 1.19694 0.96422 1.07128 0.91198 1.21016 0.93971 0.97008 0.98001 1.21370 0.94663 1.03695 0.98736 1.21285 1.00909 0.96603 0.91663 1.21494 0.91907 1.08668 1.01227 1.19015 0.90392 0.96948 0.86558 1.86046 1.36078 1.88356 1.14223 1.23320 0.99828 1.02144 0.82302 0.93166 0.90972 0.92228 0.90184 0.89662 0.73461 0.84579 0.83923 0.95121 0.95216 0.92114 0.84770 0.83972 0.83290 0.83435 0.90929 0.86860 0.92342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 9.86 71.98 0.71 -2.29 16 2 C -0.11 -1.96 5.52 30.59 0.17 -1.79 16 3 C 0.20 4.76 2.00 44.24 0.09 4.85 16 4 H 0.08 2.26 6.64 -2.39 -0.02 2.24 16 5 N -1.10 -26.44 3.61 -172.53 -0.62 -27.06 16 6 S 2.62 88.77 5.37 -56.49 -0.30 88.46 16 7 O -0.99 -38.05 18.08 -127.65 -2.31 -40.36 16 8 O -0.98 -39.48 17.81 -127.65 -2.27 -41.75 16 9 C -0.59 -21.80 5.94 71.98 0.43 -21.37 16 10 C -0.02 -0.73 4.05 29.85 0.12 -0.61 16 11 C -0.53 -29.98 9.66 25.60 0.25 -29.73 16 12 H 0.05 3.08 7.99 -2.91 -0.02 3.06 16 13 C 0.02 0.90 5.47 84.66 0.46 1.37 16 14 N -0.94 -57.98 13.96 21.45 0.30 -57.68 16 15 Si 0.92 44.38 27.47 68.60 1.88 46.26 16 16 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 17 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 18 H -0.25 -11.51 6.54 99.48 0.65 -10.86 16 19 C -0.14 -3.57 5.07 -19.77 -0.10 -3.67 16 20 C -0.08 -1.88 9.32 22.25 0.21 -1.67 16 21 C -0.17 -3.32 10.04 22.28 0.22 -3.09 16 22 C -0.09 -1.59 10.04 22.25 0.22 -1.37 16 23 C -0.21 -4.31 9.04 22.37 0.20 -4.11 16 24 C 0.12 2.86 6.66 22.51 0.15 3.01 16 25 O -0.33 -7.87 9.63 -92.40 -0.89 -8.76 16 26 C 0.02 0.28 9.81 113.37 1.11 1.39 16 27 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.06 1.11 7.64 -2.39 -0.02 1.09 16 30 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.43 7.78 8.54 -96.73 -0.83 6.96 16 33 H 0.14 4.65 7.35 -2.39 -0.02 4.63 16 34 H 0.14 4.75 8.14 -2.39 -0.02 4.73 16 35 H 0.03 1.46 7.20 -2.38 -0.02 1.44 16 36 H 0.03 1.41 7.57 -2.39 -0.02 1.39 16 37 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 38 H 0.13 2.70 7.09 -2.91 -0.02 2.68 16 39 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 40 H 0.15 1.81 8.06 -2.91 -0.02 1.78 16 41 H 0.15 2.17 6.30 -2.91 -0.02 2.16 16 42 H 0.07 0.79 7.66 -2.39 -0.02 0.78 16 43 H 0.11 1.37 8.14 -2.38 -0.02 1.35 16 44 H 0.06 0.84 7.66 -2.39 -0.02 0.82 16 Total: -1.00 -77.54 374.08 0.15 -77.39 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: 0.12 Total: 22.58 kcal Atomic # 6 Polarization: -63.33 SS G_CDS: 4.24 Total: -59.08 kcal Atomic # 7 Polarization: -84.42 SS G_CDS: -0.32 Total: -84.74 kcal Atomic # 8 Polarization: -85.40 SS G_CDS: -5.47 Total: -90.87 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.88 Total: 46.26 kcal Atomic # 16 Polarization: 88.77 SS G_CDS: -0.30 Total: 88.46 kcal Total: -77.54 0.15 -77.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732217810.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.881 kcal (2) G-P(sol) polarization free energy of solvation -77.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds