Wall clock time and date at job start Tue Mar 31 2020 14:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.34253 * 126.44324 * 2 1 4 4 C 1.34478 * 108.18760 * 179.97438 * 3 2 1 5 5 C 1.47887 * 125.48062 * 179.97438 * 4 3 2 6 6 C 1.39546 * 120.13847 * 359.71662 * 5 4 3 7 7 C 1.37968 * 119.85466 * 179.74404 * 6 5 4 8 8 C 1.38352 * 120.13816 * 0.53780 * 7 6 5 9 9 C 1.38352 * 120.29053 * 359.74400 * 8 7 6 10 10 C 1.37972 * 120.14033 * 359.97235 * 9 8 7 11 11 N 1.30880 * 109.03953 * 359.76272 * 4 3 2 12 12 C 1.35817 * 108.41293 * 0.37857 * 11 4 3 13 13 C 1.47318 * 126.37975 * 179.88486 * 12 11 4 14 14 O 1.21524 * 120.00351 * 182.46787 * 13 12 11 15 15 O 1.34776 * 119.99328 * 2.47010 * 13 12 11 16 16 C 1.45201 * 116.99688 * 183.15736 * 15 13 12 17 17 C 1.52997 * 109.47484 * 179.71355 * 16 15 13 18 18 C 1.50701 * 115.55085 * 295.09893 * 17 16 15 19 19 H 1.08003 * 120.00112 * 114.64535 * 18 17 16 20 20 C 1.37879 * 119.99819 * 294.37349 * 18 17 16 21 21 N 1.31517 * 119.99970 * 174.53615 * 20 18 17 22 22 Si 1.86795 * 119.99992 * 354.53284 * 20 18 17 23 23 H 1.48496 * 109.47159 * 87.76324 * 22 20 18 24 24 H 1.48495 * 109.47269 * 207.76452 * 22 20 18 25 25 H 1.48503 * 109.47478 * 327.76317 * 22 20 18 26 26 C 1.53000 * 117.49746 * 80.76476 * 17 16 15 27 27 C 1.52998 * 117.49955 * 149.42344 * 17 16 15 28 28 H 1.09001 * 109.46820 * 270.01787 * 1 2 3 29 29 H 1.08993 * 109.47354 * 30.02473 * 1 2 3 30 30 H 1.09009 * 109.46969 * 150.02709 * 1 2 3 31 31 H 1.08003 * 120.07140 * 0.02562 * 6 5 4 32 32 H 1.07997 * 119.93343 * 180.25740 * 7 6 5 33 33 H 1.07999 * 119.85492 * 179.71370 * 8 7 6 34 34 H 1.07997 * 119.93358 * 179.97438 * 9 8 7 35 35 H 1.07998 * 120.07115 * 180.02562 * 10 9 8 36 36 H 1.09006 * 109.46980 * 59.71483 * 16 15 13 37 37 H 1.09002 * 109.47584 * 299.71709 * 16 15 13 38 38 H 0.97001 * 120.00072 * 179.97438 * 21 20 18 39 39 H 1.08997 * 117.49893 * 215.00943 * 26 17 16 40 40 H 1.09004 * 117.49539 * 0.02562 * 26 17 16 41 41 H 1.08996 * 117.49809 * 359.97438 * 27 17 16 42 42 H 1.09004 * 117.49669 * 144.97679 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3044 1.0800 0.0000 4 6 3.5815 0.6587 0.0006 5 6 4.7740 1.5335 0.0002 6 6 4.6251 2.9210 -0.0067 7 6 5.7415 3.7316 -0.0017 8 6 7.0066 3.1715 -0.0009 9 6 7.1611 1.7966 0.0000 10 6 6.0527 0.9749 0.0009 11 7 3.5994 -0.6499 0.0060 12 6 2.3168 -1.0966 0.0006 13 6 1.8816 -2.5040 0.0015 14 8 0.6979 -2.7741 -0.0491 15 8 2.7965 -3.4920 0.0586 16 6 2.3004 -4.8547 -0.0153 17 6 3.4767 -5.8304 0.0575 18 6 4.4429 -5.7710 -1.0975 19 1 5.4607 -5.4488 -0.9341 20 6 4.0290 -6.1333 -2.3618 21 7 4.8377 -5.9801 -3.3875 22 14 2.3198 -6.8420 -2.6177 23 1 1.3531 -5.7362 -2.8365 24 1 2.3267 -7.7353 -3.8039 25 1 1.9205 -7.6179 -1.4161 26 6 4.0483 -6.1457 1.4412 27 6 3.2223 -7.1972 0.6962 28 1 -0.3633 0.0003 1.0277 29 1 -0.3634 0.8897 -0.5142 30 1 -0.3633 -0.8903 -0.5135 31 1 3.6380 3.3593 -0.0115 32 1 5.6277 4.8055 -0.0028 33 1 7.8774 3.8103 -0.0017 34 1 8.1513 1.3656 0.0002 35 1 6.1746 -0.0981 0.0021 36 1 1.7680 -4.9970 -0.9558 37 1 1.6223 -5.0403 0.8177 38 1 4.5467 -6.2354 -4.2770 39 1 5.1232 -6.3101 1.5162 40 1 3.5861 -5.6583 2.2997 41 1 2.2171 -7.4011 1.0650 42 1 3.7535 -8.0535 0.2808 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744277260.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:49 Heat of formation + Delta-G solvation = -5.129637 kcal Electronic energy + Delta-G solvation = -26833.519613 eV Core-core repulsion = 22939.629698 eV Total energy + Delta-G solvation = -3893.889914 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.50267 -39.78360 -39.21690 -37.12023 -35.46908 -34.97129 -33.17722 -32.10324 -31.20867 -31.13049 -28.04343 -26.85890 -25.35161 -24.35922 -23.02669 -22.61724 -21.62384 -21.36016 -20.17787 -19.14224 -18.13922 -17.26688 -17.12574 -16.77082 -16.09770 -15.80422 -15.52499 -15.49055 -14.97302 -14.68811 -14.03885 -13.90858 -13.65951 -13.61762 -13.45906 -13.08477 -12.95020 -12.64942 -12.60596 -12.43809 -12.14127 -11.70642 -11.43248 -11.34627 -11.05500 -10.89349 -10.72149 -10.61053 -10.43638 -10.16677 -9.97522 -9.83846 -9.52988 -9.21618 -9.05488 -8.64538 -8.47734 -8.38670 -6.08772 -4.08829 0.43844 1.12280 1.15456 2.17560 2.21654 2.93631 3.23550 3.27122 3.37277 3.40950 3.62174 3.71778 4.39569 4.41230 4.65264 4.69676 4.74900 4.86535 4.96742 5.08868 5.14802 5.18694 5.27211 5.27327 5.32906 5.55708 5.63753 5.69215 5.77821 5.82459 5.83993 5.88737 5.99429 6.13525 6.17014 6.21187 6.26785 6.34059 6.48107 6.64580 6.66943 6.82676 7.05018 7.11288 7.41605 7.72119 8.17854 8.52845 8.96049 9.53254 11.03308 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.012789 B = 0.003477 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.823734 B = 8051.552601 C = 9086.133833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.047 3.953 3 O -0.190 6.190 4 C 0.228 3.772 5 C -0.015 4.015 6 C -0.091 4.091 7 C -0.124 4.124 8 C -0.102 4.102 9 C -0.119 4.119 10 C -0.066 4.066 11 N -0.413 5.413 12 C -0.043 4.043 13 C 0.547 3.453 14 O -0.515 6.515 15 O -0.302 6.302 16 C 0.103 3.897 17 C -0.008 4.008 18 C -0.475 4.475 19 H 0.081 0.919 20 C 0.079 3.921 21 N -0.894 5.894 22 Si 0.860 3.140 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.249 1.249 26 C -0.174 4.174 27 C -0.181 4.181 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.115 0.885 31 H 0.130 0.870 32 H 0.129 0.871 33 H 0.127 0.873 34 H 0.134 0.866 35 H 0.145 0.855 36 H 0.064 0.936 37 H 0.052 0.948 38 H 0.265 0.735 39 H 0.089 0.911 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.921 18.906 8.213 20.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.009 4.009 3 O -0.078 6.078 4 C 0.022 3.978 5 C -0.017 4.017 6 C -0.111 4.111 7 C -0.142 4.142 8 C -0.121 4.121 9 C -0.137 4.137 10 C -0.085 4.085 11 N -0.141 5.141 12 C -0.163 4.163 13 C 0.391 3.609 14 O -0.406 6.406 15 O -0.216 6.216 16 C 0.029 3.971 17 C -0.009 4.009 18 C -0.512 4.512 19 H 0.099 0.901 20 C -0.124 4.124 21 N -0.531 5.531 22 Si 0.687 3.313 23 H -0.204 1.204 24 H -0.215 1.215 25 H -0.173 1.173 26 C -0.211 4.211 27 C -0.219 4.219 28 H 0.113 0.887 29 H 0.102 0.898 30 H 0.133 0.867 31 H 0.148 0.852 32 H 0.147 0.853 33 H 0.145 0.855 34 H 0.152 0.848 35 H 0.163 0.837 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.107 0.893 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.688 18.339 8.004 20.190 hybrid contribution -1.600 -0.058 -0.401 1.651 sum -4.288 18.282 7.603 20.259 Atomic orbital electron populations 1.20664 0.82106 1.05772 1.04847 1.23766 0.95024 0.83001 0.99149 1.84345 1.17686 1.35714 1.70015 1.23774 0.82383 0.88977 1.02690 1.17272 0.87603 0.90838 1.05945 1.21207 0.99781 0.91688 0.98384 1.21042 0.92109 0.99942 1.01139 1.21381 0.97510 0.95273 0.97917 1.21177 0.98898 0.93426 1.00220 1.21362 0.90086 1.01765 0.95300 1.71154 1.21068 1.07461 1.14418 1.20452 0.89077 0.93013 1.13779 1.19429 0.83938 0.84687 0.72869 1.90785 1.17849 1.84211 1.47774 1.86750 1.37693 1.16206 1.80903 1.23103 0.96739 0.76873 1.00354 1.19311 0.95611 0.91532 0.94489 1.20229 0.97242 1.44402 0.89373 0.90143 1.24921 0.96875 0.94849 0.95736 1.69890 1.36523 1.47273 0.99377 0.87164 0.85487 0.79917 0.78754 1.20379 1.21472 1.17316 1.22780 0.99336 1.03827 0.95138 1.23087 0.99263 0.94237 1.05286 0.88734 0.89781 0.86699 0.85234 0.85308 0.85494 0.84823 0.83706 0.91764 0.92958 0.92551 0.89272 0.90814 0.91070 0.88811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 9.90 36.00 0.36 -0.47 16 2 C 0.05 0.69 7.44 -35.00 -0.26 0.43 16 3 O -0.19 -2.68 10.45 5.37 0.06 -2.62 16 4 C 0.23 3.53 7.88 -14.01 -0.11 3.42 16 5 C -0.02 -0.20 5.87 -104.97 -0.62 -0.81 16 6 C -0.09 -0.91 9.71 -39.19 -0.38 -1.29 16 7 C -0.12 -1.01 10.03 -39.64 -0.40 -1.40 16 8 C -0.10 -0.82 10.04 -39.50 -0.40 -1.22 16 9 C -0.12 -1.14 10.03 -39.64 -0.40 -1.54 16 10 C -0.07 -0.82 9.68 -39.19 -0.38 -1.19 16 11 N -0.41 -7.77 10.96 -8.28 -0.09 -7.86 16 12 C -0.04 -0.80 7.03 -83.10 -0.58 -1.39 16 13 C 0.55 11.45 7.95 34.42 0.27 11.72 16 14 O -0.52 -10.59 14.56 -19.28 -0.28 -10.87 16 15 O -0.30 -7.13 10.16 -40.70 -0.41 -7.54 16 16 C 0.10 2.38 4.94 37.16 0.18 2.56 16 17 C -0.01 -0.20 1.07 -155.66 -0.17 -0.37 16 18 C -0.48 -13.59 9.33 -34.44 -0.32 -13.91 16 19 H 0.08 2.52 8.06 -52.48 -0.42 2.09 16 20 C 0.08 2.29 5.47 -17.82 -0.10 2.20 16 21 N -0.89 -27.58 13.96 55.43 0.77 -26.80 16 22 Si 0.86 21.61 25.08 -169.99 -4.26 17.35 16 23 H -0.28 -7.01 6.79 56.52 0.38 -6.62 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.25 -5.80 5.84 56.52 0.33 -5.47 16 26 C -0.17 -3.61 9.96 -26.69 -0.27 -3.87 16 27 C -0.18 -3.81 8.07 -26.70 -0.22 -4.03 16 28 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.11 1.39 6.42 -51.92 -0.33 1.06 16 31 H 0.13 1.10 7.89 -52.48 -0.41 0.68 16 32 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 33 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 34 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.15 1.98 7.82 -52.49 -0.41 1.57 16 36 H 0.06 1.57 4.92 -51.93 -0.26 1.32 16 37 H 0.05 1.08 8.07 -51.93 -0.42 0.66 16 38 H 0.26 7.67 8.31 -40.82 -0.34 7.34 16 39 H 0.09 1.84 8.14 -51.93 -0.42 1.41 16 40 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 41 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.09 1.99 8.14 -51.93 -0.42 1.57 16 LS Contribution 363.81 15.07 5.48 5.48 Total: -1.00 -33.78 363.81 -7.80 -41.58 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -5.28 Total: 2.46 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -3.78 Total: -11.17 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: 0.68 Total: -34.67 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -0.64 Total: -21.04 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.26 Total: 17.35 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.78 -7.80 -41.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744277260.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.449 kcal (2) G-P(sol) polarization free energy of solvation -33.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds