Wall clock time and date at job start Tue Mar 31 2020 14:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.34253 * 126.44324 * 2 1 4 4 C 1.34478 * 108.18760 * 179.97438 * 3 2 1 5 5 C 1.47887 * 125.48062 * 179.97438 * 4 3 2 6 6 C 1.39546 * 120.13847 * 359.71662 * 5 4 3 7 7 C 1.37968 * 119.85466 * 179.74404 * 6 5 4 8 8 C 1.38352 * 120.13816 * 0.53780 * 7 6 5 9 9 C 1.38352 * 120.29053 * 359.74400 * 8 7 6 10 10 C 1.37972 * 120.14033 * 359.97235 * 9 8 7 11 11 N 1.30880 * 109.03953 * 359.76272 * 4 3 2 12 12 C 1.35817 * 108.41293 * 0.37857 * 11 4 3 13 13 C 1.47318 * 126.37975 * 179.88486 * 12 11 4 14 14 O 1.21524 * 120.00351 * 182.46787 * 13 12 11 15 15 O 1.34776 * 119.99328 * 2.47010 * 13 12 11 16 16 C 1.45201 * 116.99688 * 183.15736 * 15 13 12 17 17 C 1.52997 * 109.47484 * 179.71355 * 16 15 13 18 18 C 1.50701 * 115.55085 * 295.09893 * 17 16 15 19 19 H 1.08003 * 120.00112 * 114.64535 * 18 17 16 20 20 C 1.37879 * 119.99819 * 294.37349 * 18 17 16 21 21 N 1.31517 * 119.99970 * 174.53615 * 20 18 17 22 22 Si 1.86795 * 119.99992 * 354.53284 * 20 18 17 23 23 H 1.48496 * 109.47159 * 87.76324 * 22 20 18 24 24 H 1.48495 * 109.47269 * 207.76452 * 22 20 18 25 25 H 1.48503 * 109.47478 * 327.76317 * 22 20 18 26 26 C 1.53000 * 117.49746 * 80.76476 * 17 16 15 27 27 C 1.52998 * 117.49955 * 149.42344 * 17 16 15 28 28 H 1.09001 * 109.46820 * 270.01787 * 1 2 3 29 29 H 1.08993 * 109.47354 * 30.02473 * 1 2 3 30 30 H 1.09009 * 109.46969 * 150.02709 * 1 2 3 31 31 H 1.08003 * 120.07140 * 0.02562 * 6 5 4 32 32 H 1.07997 * 119.93343 * 180.25740 * 7 6 5 33 33 H 1.07999 * 119.85492 * 179.71370 * 8 7 6 34 34 H 1.07997 * 119.93358 * 179.97438 * 9 8 7 35 35 H 1.07998 * 120.07115 * 180.02562 * 10 9 8 36 36 H 1.09006 * 109.46980 * 59.71483 * 16 15 13 37 37 H 1.09002 * 109.47584 * 299.71709 * 16 15 13 38 38 H 0.97001 * 120.00072 * 179.97438 * 21 20 18 39 39 H 1.08997 * 117.49893 * 215.00943 * 26 17 16 40 40 H 1.09004 * 117.49539 * 0.02562 * 26 17 16 41 41 H 1.08996 * 117.49809 * 359.97438 * 27 17 16 42 42 H 1.09004 * 117.49669 * 144.97679 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3044 1.0800 0.0000 4 6 3.5815 0.6587 0.0006 5 6 4.7740 1.5335 0.0002 6 6 4.6251 2.9210 -0.0067 7 6 5.7415 3.7316 -0.0017 8 6 7.0066 3.1715 -0.0009 9 6 7.1611 1.7966 0.0000 10 6 6.0527 0.9749 0.0009 11 7 3.5994 -0.6499 0.0060 12 6 2.3168 -1.0966 0.0006 13 6 1.8816 -2.5040 0.0015 14 8 0.6979 -2.7741 -0.0491 15 8 2.7965 -3.4920 0.0586 16 6 2.3004 -4.8547 -0.0153 17 6 3.4767 -5.8304 0.0575 18 6 4.4429 -5.7710 -1.0975 19 1 5.4607 -5.4488 -0.9341 20 6 4.0290 -6.1333 -2.3618 21 7 4.8377 -5.9801 -3.3875 22 14 2.3198 -6.8420 -2.6177 23 1 1.3531 -5.7362 -2.8365 24 1 2.3267 -7.7353 -3.8039 25 1 1.9205 -7.6179 -1.4161 26 6 4.0483 -6.1457 1.4412 27 6 3.2223 -7.1972 0.6962 28 1 -0.3633 0.0003 1.0277 29 1 -0.3634 0.8897 -0.5142 30 1 -0.3633 -0.8903 -0.5135 31 1 3.6380 3.3593 -0.0115 32 1 5.6277 4.8055 -0.0028 33 1 7.8774 3.8103 -0.0017 34 1 8.1513 1.3656 0.0002 35 1 6.1746 -0.0981 0.0021 36 1 1.7680 -4.9970 -0.9558 37 1 1.6223 -5.0403 0.8177 38 1 4.5467 -6.2354 -4.2770 39 1 5.1232 -6.3101 1.5162 40 1 3.5861 -5.6583 2.2997 41 1 2.2171 -7.4011 1.0650 42 1 3.7535 -8.0535 0.2808 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744277260.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:48 Heat of formation + Delta-G solvation = -27.258405 kcal Electronic energy + Delta-G solvation = -26834.479188 eV Core-core repulsion = 22939.629698 eV Total energy + Delta-G solvation = -3894.849490 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.70466 -41.41062 -40.00863 -38.87168 -37.17166 -36.21935 -34.32284 -34.21397 -32.02036 -31.95487 -29.60051 -28.28950 -27.29698 -25.64032 -24.01987 -23.62436 -23.24131 -22.48476 -21.49240 -21.07552 -19.43947 -18.84988 -18.37115 -18.30290 -17.52295 -17.39088 -16.84355 -16.59702 -16.47083 -15.85779 -15.55767 -15.00977 -14.88534 -14.76781 -14.60188 -14.41046 -14.27506 -14.14273 -13.92435 -13.75195 -13.56166 -13.02974 -12.91067 -12.69098 -12.43139 -12.32238 -12.18514 -12.15493 -12.00914 -11.80629 -11.73449 -11.45487 -11.02576 -10.82966 -10.67719 -10.43663 -9.98237 -9.41274 -8.33868 -6.38664 -0.55401 -0.10437 0.38865 1.01199 1.07137 1.26937 1.30812 1.40900 1.48249 1.81493 2.30216 2.56910 2.80658 2.93076 3.20248 3.27165 3.57967 3.85496 3.89498 3.98530 4.00801 4.07065 4.09813 4.18846 4.25163 4.35826 4.42881 4.48853 4.50721 4.53807 4.63822 4.74121 4.84506 4.88223 4.91624 4.97316 5.06314 5.15070 5.35709 5.36912 5.44642 5.45712 5.50771 5.62114 5.92001 6.17842 6.25897 6.58850 6.66880 7.27052 8.82404 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.012789 B = 0.003477 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.823734 B = 8051.552601 C = 9086.133833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.077 3.923 3 O -0.178 6.178 4 C 0.237 3.763 5 C -0.047 4.047 6 C -0.088 4.088 7 C -0.116 4.116 8 C -0.089 4.089 9 C -0.124 4.124 10 C -0.091 4.091 11 N -0.466 5.466 12 C -0.094 4.094 13 C 0.543 3.457 14 O -0.517 6.517 15 O -0.332 6.332 16 C 0.106 3.894 17 C -0.046 4.046 18 C -0.478 4.478 19 H 0.028 0.972 20 C 0.021 3.979 21 N -0.947 5.947 22 Si 0.921 3.079 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.212 1.212 26 C -0.160 4.160 27 C -0.159 4.159 28 H 0.120 0.880 29 H 0.119 0.881 30 H 0.101 0.899 31 H 0.147 0.853 32 H 0.167 0.833 33 H 0.164 0.836 34 H 0.149 0.851 35 H 0.113 0.887 36 H 0.047 0.953 37 H 0.083 0.917 38 H 0.266 0.734 39 H 0.081 0.919 40 H 0.101 0.899 41 H 0.107 0.893 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.930 21.248 9.792 23.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.020 3.980 3 O -0.065 6.065 4 C 0.031 3.969 5 C -0.048 4.048 6 C -0.107 4.107 7 C -0.134 4.134 8 C -0.107 4.107 9 C -0.142 4.142 10 C -0.110 4.110 11 N -0.194 5.194 12 C -0.212 4.212 13 C 0.388 3.612 14 O -0.408 6.408 15 O -0.246 6.246 16 C 0.033 3.967 17 C -0.047 4.047 18 C -0.516 4.516 19 H 0.046 0.954 20 C -0.176 4.176 21 N -0.586 5.586 22 Si 0.745 3.255 23 H -0.208 1.208 24 H -0.213 1.213 25 H -0.134 1.134 26 C -0.197 4.197 27 C -0.197 4.197 28 H 0.138 0.862 29 H 0.138 0.862 30 H 0.119 0.881 31 H 0.164 0.836 32 H 0.185 0.815 33 H 0.181 0.819 34 H 0.167 0.833 35 H 0.132 0.868 36 H 0.065 0.935 37 H 0.101 0.899 38 H 0.075 0.925 39 H 0.100 0.900 40 H 0.120 0.880 41 H 0.125 0.875 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.704 20.664 9.617 23.273 hybrid contribution -0.802 -0.565 -0.851 1.299 sum -5.506 20.099 8.766 22.608 Atomic orbital electron populations 1.20911 0.78833 1.06784 1.06681 1.24453 0.96364 0.81845 0.95380 1.84382 1.17209 1.35125 1.69833 1.24297 0.83395 0.88493 1.00741 1.17484 0.86512 0.91996 1.08816 1.21470 1.01555 0.90253 0.97426 1.21514 0.91233 1.01602 0.99024 1.21837 0.99031 0.94595 0.95266 1.21416 0.98561 0.94370 0.99871 1.21290 0.91433 1.00817 0.97473 1.71076 1.21922 1.09445 1.16956 1.20442 0.90078 0.92763 1.17953 1.19762 0.83761 0.85150 0.72494 1.90748 1.17474 1.84466 1.48142 1.86749 1.39280 1.16934 1.81676 1.22993 0.96347 0.76766 1.00625 1.19230 0.96355 0.94540 0.94589 1.20363 0.96186 1.43420 0.91627 0.95351 1.25783 1.01276 0.95328 0.95240 1.70050 1.39098 1.49457 1.00010 0.86176 0.79951 0.79304 0.80046 1.20777 1.21259 1.13421 1.22844 0.99380 1.03240 0.94209 1.23149 1.01003 0.92296 1.03209 0.86174 0.86204 0.88068 0.83568 0.81535 0.81877 0.83335 0.86847 0.93508 0.89886 0.92534 0.90003 0.88047 0.87510 0.89167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.45 9.90 71.23 0.71 -0.74 16 2 C 0.08 2.22 7.44 25.24 0.19 2.41 16 3 O -0.18 -4.92 10.45 -3.71 -0.04 -4.96 16 4 C 0.24 7.65 7.88 87.39 0.69 8.33 16 5 C -0.05 -1.23 5.87 -20.09 -0.12 -1.35 16 6 C -0.09 -1.58 9.71 22.52 0.22 -1.36 16 7 C -0.12 -1.45 10.03 22.23 0.22 -1.23 16 8 C -0.09 -1.14 10.04 22.32 0.22 -0.92 16 9 C -0.12 -2.31 10.03 22.23 0.22 -2.09 16 10 C -0.09 -2.40 9.68 22.52 0.22 -2.18 16 11 N -0.47 -18.80 10.96 -294.30 -3.23 -22.02 16 12 C -0.09 -3.65 7.03 40.47 0.28 -3.37 16 13 C 0.54 23.47 7.95 70.21 0.56 24.03 16 14 O -0.52 -21.29 14.56 19.76 0.29 -21.00 16 15 O -0.33 -16.29 10.16 -56.87 -0.58 -16.87 16 16 C 0.11 4.89 4.94 71.98 0.36 5.24 16 17 C -0.05 -2.23 1.07 -52.93 -0.06 -2.29 16 18 C -0.48 -28.76 9.33 25.60 0.24 -28.52 16 19 H 0.03 1.92 8.06 -2.91 -0.02 1.90 16 20 C 0.02 1.29 5.47 84.65 0.46 1.75 16 21 N -0.95 -61.64 13.96 21.45 0.30 -61.34 16 22 Si 0.92 45.25 25.08 68.60 1.72 46.97 16 23 H -0.28 -13.90 6.79 99.48 0.68 -13.23 16 24 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 25 H -0.21 -9.05 5.84 99.48 0.58 -8.47 16 26 C -0.16 -6.47 9.96 30.62 0.30 -6.17 16 27 C -0.16 -6.30 8.07 30.62 0.25 -6.05 16 28 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.10 2.31 6.42 -2.38 -0.02 2.29 16 31 H 0.15 2.07 7.89 -2.91 -0.02 2.05 16 32 H 0.17 0.88 8.06 -2.91 -0.02 0.86 16 33 H 0.16 0.96 8.06 -2.91 -0.02 0.94 16 34 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 35 H 0.11 3.61 7.82 -2.91 -0.02 3.58 16 36 H 0.05 2.29 4.92 -2.38 -0.01 2.27 16 37 H 0.08 3.26 8.07 -2.39 -0.02 3.24 16 38 H 0.27 16.20 8.31 -92.71 -0.77 15.43 16 39 H 0.08 3.40 8.14 -2.39 -0.02 3.38 16 40 H 0.10 3.55 8.14 -2.38 -0.02 3.53 16 41 H 0.11 3.51 8.14 -2.39 -0.02 3.50 16 42 H 0.09 3.64 8.14 -2.38 -0.02 3.62 16 Total: -1.00 -80.94 363.81 4.32 -76.62 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 0.89 Total: 17.11 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: 4.97 Total: -14.50 kcal Atomic # 7 Polarization: -80.44 SS G_CDS: -2.93 Total: -83.36 kcal Atomic # 8 Polarization: -42.50 SS G_CDS: -0.33 Total: -42.83 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.72 Total: 46.97 kcal Total: -80.94 4.32 -76.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744277260.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.358 kcal (2) G-P(sol) polarization free energy of solvation -80.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds