Wall clock time and date at job start Tue Mar 31 2020 14:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50706 * 109.47159 * 2 1 4 4 C 1.38018 * 119.51006 * 125.00061 * 3 2 1 5 5 C 1.39967 * 119.12367 * 180.02562 * 4 3 2 6 6 C 1.48064 * 120.89342 * 179.97438 * 5 4 3 7 7 O 1.21433 * 120.00292 * 0.02562 * 6 5 4 8 8 O 1.34667 * 119.99958 * 180.02562 * 6 5 4 9 9 C 1.45202 * 117.00280 * 180.02562 * 8 6 5 10 10 C 1.50700 * 109.47062 * 180.02562 * 9 8 6 11 11 C 1.38635 * 119.74771 * 269.72351 * 10 9 8 12 12 C 1.37624 * 120.24964 * 179.72094 * 11 10 9 13 13 C 1.40717 * 119.73679 * 0.57836 * 12 11 10 14 14 C 1.41402 * 120.23847 * 179.67688 * 13 12 11 15 15 H 1.07998 * 120.00074 * 204.40505 * 14 13 12 16 16 C 1.39945 * 119.99874 * 24.40735 * 14 13 12 17 17 N 1.30824 * 120.00405 * 17.84641 * 16 14 13 18 18 Si 1.86797 * 119.99936 * 197.84469 * 16 14 13 19 19 H 1.48502 * 109.47151 * 90.00147 * 18 16 14 20 20 H 1.48497 * 109.47468 * 210.00136 * 18 16 14 21 21 H 1.48500 * 109.47187 * 330.00150 * 18 16 14 22 22 C 1.40710 * 119.51686 * 359.69906 * 13 12 11 23 23 C 1.37615 * 119.74272 * 0.02562 * 22 13 12 24 24 C 1.39657 * 118.20941 * 0.25198 * 5 4 3 25 25 C 1.38846 * 118.93864 * 359.50013 * 24 5 4 26 26 O 1.35694 * 119.61803 * 180.25368 * 25 24 5 27 27 N 1.31877 * 119.50942 * 305.02086 * 3 2 1 28 28 H 1.09000 * 109.46915 * 60.00108 * 1 2 3 29 29 H 1.09000 * 109.46948 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46945 * 299.99774 * 1 2 3 31 31 H 1.09003 * 109.47156 * 240.00251 * 2 1 3 32 32 H 1.08998 * 109.47325 * 120.00231 * 2 1 3 33 33 H 1.08000 * 120.43884 * 359.97438 * 4 3 2 34 34 H 1.08996 * 109.46887 * 300.00140 * 9 8 6 35 35 H 1.08998 * 109.46721 * 59.99837 * 9 8 6 36 36 H 1.08005 * 119.87970 * 359.97438 * 11 10 9 37 37 H 1.07997 * 120.13071 * 180.27955 * 12 11 10 38 38 H 0.97002 * 120.00394 * 180.02562 * 17 16 14 39 39 H 1.08003 * 120.12782 * 179.97438 * 22 13 12 40 40 H 1.08003 * 119.87400 * 180.02562 * 23 22 13 41 41 H 1.07994 * 120.52970 * 179.75452 * 24 5 4 42 42 H 0.96699 * 113.99795 * 270.25363 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.9085 1.8322 0.9839 5 6 3.3696 3.1537 0.9765 6 6 4.3097 3.6367 2.0134 7 8 4.6915 2.8829 2.8855 8 8 4.7414 4.9121 1.9893 9 6 5.6622 5.3163 3.0367 10 6 6.0324 6.7650 2.8487 11 6 7.1343 7.0988 2.0765 12 6 7.4783 8.4187 1.8932 13 6 6.7137 9.4304 2.5032 14 6 7.0616 10.7896 2.3275 15 1 6.7631 11.5228 3.0622 16 6 7.7929 11.1849 1.2017 17 7 7.8576 10.4018 0.1557 18 14 8.6764 12.8306 1.1924 19 1 10.0542 12.6558 1.7181 20 1 8.7392 13.3510 -0.1970 21 1 7.9384 13.7936 2.0487 22 6 5.6008 9.0796 3.2895 23 6 5.2721 7.7534 3.4543 24 6 2.9143 4.0060 -0.0318 25 6 2.0369 3.5091 -0.9863 26 8 1.5900 4.3238 -1.9751 27 7 1.6279 2.2528 -0.9399 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.2335 1.1437 1.7499 34 1 5.1865 5.1864 4.0087 35 1 6.5611 4.7018 2.9871 36 1 7.7227 6.3203 1.6136 37 1 8.3344 8.6767 1.2876 38 1 8.3648 10.6757 -0.6246 39 1 5.0074 9.8480 3.7625 40 1 4.4181 7.4818 4.0570 41 1 3.2428 5.0341 -0.0710 42 1 0.7781 4.8007 -1.7549 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751605070.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:58 Heat of formation + Delta-G solvation = -82.782413 kcal Electronic energy + Delta-G solvation = -25837.347277 eV Core-core repulsion = 21940.090086 eV Total energy + Delta-G solvation = -3897.257191 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.06409 -39.87920 -37.78414 -37.49189 -36.17679 -34.32289 -33.90373 -32.53129 -30.84463 -29.71929 -29.42229 -27.43439 -25.57727 -24.42230 -23.51380 -22.62391 -21.14556 -20.62938 -20.11854 -18.93253 -17.61860 -17.43865 -17.05285 -16.29794 -16.19130 -15.91815 -15.57535 -15.35594 -14.61069 -14.49460 -14.33465 -13.90292 -13.86078 -13.42158 -12.99823 -12.71487 -12.51206 -12.40178 -12.18742 -12.08467 -12.01521 -11.79233 -11.76597 -11.36386 -11.23804 -11.04878 -10.95703 -10.65537 -10.48621 -10.28469 -10.15238 -9.81080 -9.70892 -9.51662 -9.27650 -9.10378 -7.62148 -7.51227 -6.91203 -4.51524 0.34043 0.68780 2.29952 2.46918 2.85407 2.95973 3.00416 3.03129 3.16818 3.25131 3.48754 3.82199 4.12172 4.39189 4.61537 4.65306 4.73153 4.90155 5.00926 5.04139 5.16272 5.43145 5.48134 5.54364 5.57620 5.58300 5.62836 5.73373 5.83373 5.94715 6.01098 6.14607 6.18739 6.25971 6.62652 6.82332 6.92956 7.12826 7.21217 7.22361 7.46417 7.58461 7.67522 7.83395 7.90979 7.95268 8.14145 8.49039 8.73625 8.81525 10.02380 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.019879 B = 0.002322 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.149950 B =12054.683153 C =12949.498335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.072 4.072 3 C 0.146 3.854 4 C -0.123 4.123 5 C -0.054 4.054 6 C 0.502 3.498 7 O -0.506 6.506 8 O -0.341 6.341 9 C 0.137 3.863 10 C -0.240 4.240 11 C -0.074 4.074 12 C -0.171 4.171 13 C 0.119 3.881 14 C -0.454 4.454 15 H 0.081 0.919 16 C 0.074 3.926 17 N -0.783 5.783 18 Si 0.911 3.089 19 H -0.266 1.266 20 H -0.277 1.277 21 H -0.261 1.261 22 C -0.230 4.230 23 C -0.062 4.062 24 C -0.133 4.133 25 C 0.310 3.690 26 O -0.476 6.476 27 N -0.482 5.482 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.152 0.848 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.089 0.911 37 H 0.120 0.880 38 H 0.284 0.716 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.161 0.839 42 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.468 -14.104 -1.326 17.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 C 0.008 3.992 4 C -0.143 4.143 5 C -0.063 4.063 6 C 0.346 3.654 7 O -0.396 6.396 8 O -0.257 6.257 9 C 0.065 3.935 10 C -0.241 4.241 11 C -0.093 4.093 12 C -0.190 4.190 13 C 0.116 3.884 14 C -0.483 4.483 15 H 0.099 0.901 16 C -0.145 4.145 17 N -0.407 5.407 18 Si 0.735 3.265 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.185 1.185 22 C -0.250 4.250 23 C -0.081 4.081 24 C -0.154 4.154 25 C 0.131 3.869 26 O -0.283 6.283 27 N -0.202 5.202 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.170 0.830 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.107 0.893 37 H 0.138 0.862 38 H 0.095 0.905 39 H 0.113 0.887 40 H 0.107 0.893 41 H 0.179 0.821 42 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -10.307 -14.699 -2.246 18.093 hybrid contribution 0.658 1.325 0.689 1.632 sum -9.649 -13.374 -1.558 16.565 Atomic orbital electron populations 1.21684 0.93875 1.01917 1.02745 1.20532 0.97229 0.89572 1.03679 1.20939 0.93107 0.95988 0.89178 1.22133 0.96924 0.95106 1.00174 1.19555 0.97309 0.94274 0.95147 1.20989 0.79320 0.81664 0.83452 1.90802 1.55677 1.56786 1.36288 1.86780 1.58905 1.26674 1.53297 1.21836 0.90013 0.94310 0.87306 1.18636 1.02796 0.90745 1.11912 1.20546 0.95995 0.96123 0.96620 1.21304 1.01901 0.90965 1.04834 1.17700 0.88691 0.93456 0.88551 1.19703 1.29232 0.93874 1.05488 0.90091 1.25990 0.94602 0.99413 0.94496 1.69823 1.30830 1.37163 1.02912 0.86255 0.80363 0.81399 0.78442 1.19119 1.20167 1.18481 1.20961 1.00580 0.94344 1.09111 1.20389 0.96751 0.93106 0.97825 1.22598 0.97860 1.02564 0.92421 1.18974 0.93580 0.87153 0.87227 1.84825 1.46860 1.58048 1.38580 1.66753 1.25380 1.04084 1.23972 0.91522 0.92125 0.92784 0.89568 0.89762 0.82988 0.91787 0.91719 0.89289 0.86196 0.90542 0.88674 0.89286 0.82106 0.73925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.77 37.16 0.36 -0.65 16 2 C -0.07 -0.54 6.33 -27.88 -0.18 -0.72 16 3 C 0.15 1.56 6.18 -82.65 -0.51 1.05 16 4 C -0.12 -1.41 9.27 -39.01 -0.36 -1.78 16 5 C -0.05 -0.73 5.91 -104.69 -0.62 -1.35 16 6 C 0.50 8.12 7.92 34.76 0.28 8.40 16 7 O -0.51 -8.86 16.23 -19.21 -0.31 -9.18 16 8 O -0.34 -6.12 9.56 -40.40 -0.39 -6.51 16 9 C 0.14 2.52 5.59 36.01 0.20 2.72 16 10 C -0.24 -5.14 5.54 -104.33 -0.58 -5.72 16 11 C -0.07 -1.69 9.67 -39.66 -0.38 -2.08 16 12 C -0.17 -4.30 8.70 -38.87 -0.34 -4.64 16 13 C 0.12 3.06 5.58 -106.82 -0.60 2.46 16 14 C -0.45 -11.58 9.05 -37.74 -0.34 -11.92 16 15 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 16 C 0.07 1.79 5.14 -17.34 -0.09 1.70 16 17 N -0.78 -19.53 10.95 55.55 0.61 -18.92 16 18 Si 0.91 17.91 29.59 -169.99 -5.03 12.87 16 19 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 20 H -0.28 -5.33 7.11 56.52 0.40 -4.92 16 21 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 22 C -0.23 -5.46 9.80 -38.88 -0.38 -5.84 16 23 C -0.06 -1.35 9.67 -39.66 -0.38 -1.74 16 24 C -0.13 -1.73 9.64 -38.83 -0.37 -2.10 16 25 C 0.31 3.82 7.74 -17.17 -0.13 3.68 16 26 O -0.48 -5.19 13.56 -18.78 -0.25 -5.45 16 27 N -0.48 -5.87 9.87 -9.60 -0.09 -5.96 16 28 H 0.07 0.54 7.94 -51.93 -0.41 0.13 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.48 7.86 -51.93 -0.41 0.07 16 33 H 0.15 1.53 7.62 -52.49 -0.40 1.13 16 34 H 0.06 1.10 8.07 -51.93 -0.42 0.68 16 35 H 0.06 1.14 8.07 -51.93 -0.42 0.72 16 36 H 0.09 1.85 8.06 -52.48 -0.42 1.43 16 37 H 0.12 3.11 6.16 -52.49 -0.32 2.78 16 38 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 39 H 0.10 2.11 8.06 -52.48 -0.42 1.68 16 40 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 41 H 0.16 2.12 7.71 -52.49 -0.40 1.71 16 42 H 0.40 2.31 9.06 45.56 0.41 2.72 16 LS Contribution 369.86 15.07 5.57 5.57 Total: -1.00 -29.64 369.86 -8.78 -38.42 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -4.46 Total: 7.65 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: -4.42 Total: -18.51 kcal Atomic # 7 Polarization: -25.39 SS G_CDS: 0.51 Total: -24.88 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.95 Total: -21.13 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.03 Total: 12.87 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.64 -8.78 -38.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751605070.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.365 kcal (2) G-P(sol) polarization free energy of solvation -29.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds