Wall clock time and date at job start Tue Mar 31 2020 14:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50706 * 109.47159 * 2 1 4 4 C 1.38018 * 119.51006 * 125.00061 * 3 2 1 5 5 C 1.39967 * 119.12367 * 180.02562 * 4 3 2 6 6 C 1.48064 * 120.89342 * 179.97438 * 5 4 3 7 7 O 1.21433 * 120.00292 * 0.02562 * 6 5 4 8 8 O 1.34667 * 119.99958 * 180.02562 * 6 5 4 9 9 C 1.45202 * 117.00280 * 180.02562 * 8 6 5 10 10 C 1.50700 * 109.47062 * 180.02562 * 9 8 6 11 11 C 1.38635 * 119.74771 * 269.72351 * 10 9 8 12 12 C 1.37624 * 120.24964 * 179.72094 * 11 10 9 13 13 C 1.40717 * 119.73679 * 0.57836 * 12 11 10 14 14 C 1.41402 * 120.23847 * 179.67688 * 13 12 11 15 15 H 1.07998 * 120.00074 * 204.40505 * 14 13 12 16 16 C 1.39945 * 119.99874 * 24.40735 * 14 13 12 17 17 N 1.30824 * 120.00405 * 17.84641 * 16 14 13 18 18 Si 1.86797 * 119.99936 * 197.84469 * 16 14 13 19 19 H 1.48502 * 109.47151 * 90.00147 * 18 16 14 20 20 H 1.48497 * 109.47468 * 210.00136 * 18 16 14 21 21 H 1.48500 * 109.47187 * 330.00150 * 18 16 14 22 22 C 1.40710 * 119.51686 * 359.69906 * 13 12 11 23 23 C 1.37615 * 119.74272 * 0.02562 * 22 13 12 24 24 C 1.39657 * 118.20941 * 0.25198 * 5 4 3 25 25 C 1.38846 * 118.93864 * 359.50013 * 24 5 4 26 26 O 1.35694 * 119.61803 * 180.25368 * 25 24 5 27 27 N 1.31877 * 119.50942 * 305.02086 * 3 2 1 28 28 H 1.09000 * 109.46915 * 60.00108 * 1 2 3 29 29 H 1.09000 * 109.46948 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46945 * 299.99774 * 1 2 3 31 31 H 1.09003 * 109.47156 * 240.00251 * 2 1 3 32 32 H 1.08998 * 109.47325 * 120.00231 * 2 1 3 33 33 H 1.08000 * 120.43884 * 359.97438 * 4 3 2 34 34 H 1.08996 * 109.46887 * 300.00140 * 9 8 6 35 35 H 1.08998 * 109.46721 * 59.99837 * 9 8 6 36 36 H 1.08005 * 119.87970 * 359.97438 * 11 10 9 37 37 H 1.07997 * 120.13071 * 180.27955 * 12 11 10 38 38 H 0.97002 * 120.00394 * 180.02562 * 17 16 14 39 39 H 1.08003 * 120.12782 * 179.97438 * 22 13 12 40 40 H 1.08003 * 119.87400 * 180.02562 * 23 22 13 41 41 H 1.07994 * 120.52970 * 179.75452 * 24 5 4 42 42 H 0.96699 * 113.99795 * 270.25363 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.9085 1.8322 0.9839 5 6 3.3696 3.1537 0.9765 6 6 4.3097 3.6367 2.0134 7 8 4.6915 2.8829 2.8855 8 8 4.7414 4.9121 1.9893 9 6 5.6622 5.3163 3.0367 10 6 6.0324 6.7650 2.8487 11 6 7.1343 7.0988 2.0765 12 6 7.4783 8.4187 1.8932 13 6 6.7137 9.4304 2.5032 14 6 7.0616 10.7896 2.3275 15 1 6.7631 11.5228 3.0622 16 6 7.7929 11.1849 1.2017 17 7 7.8576 10.4018 0.1557 18 14 8.6764 12.8306 1.1924 19 1 10.0542 12.6558 1.7181 20 1 8.7392 13.3510 -0.1970 21 1 7.9384 13.7936 2.0487 22 6 5.6008 9.0796 3.2895 23 6 5.2721 7.7534 3.4543 24 6 2.9143 4.0060 -0.0318 25 6 2.0369 3.5091 -0.9863 26 8 1.5900 4.3238 -1.9751 27 7 1.6279 2.2528 -0.9399 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.2335 1.1437 1.7499 34 1 5.1865 5.1864 4.0087 35 1 6.5611 4.7018 2.9871 36 1 7.7227 6.3203 1.6136 37 1 8.3344 8.6767 1.2876 38 1 8.3648 10.6757 -0.6246 39 1 5.0074 9.8480 3.7625 40 1 4.4181 7.4818 4.0570 41 1 3.2428 5.0341 -0.0710 42 1 0.7781 4.8007 -1.7549 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751605070.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:57 Heat of formation + Delta-G solvation = -100.215601 kcal Electronic energy + Delta-G solvation = -25838.103237 eV Core-core repulsion = 21940.090086 eV Total energy + Delta-G solvation = -3898.013151 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.10456 -41.10133 -39.50425 -38.39852 -37.58538 -35.72468 -35.09740 -33.43889 -32.56850 -31.25110 -30.54419 -29.08786 -26.75562 -25.58899 -24.77207 -23.52589 -22.97402 -21.92290 -21.64918 -19.90355 -19.28708 -18.77761 -18.12605 -17.56878 -17.37446 -17.16701 -16.86406 -16.61095 -15.90541 -15.62299 -15.52872 -15.23268 -15.17409 -14.52938 -14.28218 -14.07192 -13.94624 -13.86861 -13.56008 -13.51196 -12.95365 -12.90019 -12.81079 -12.71890 -12.61550 -12.39101 -12.17024 -11.98555 -11.92980 -11.76197 -11.51806 -11.31176 -11.14821 -11.07208 -10.67522 -9.98289 -9.46301 -9.35909 -8.70678 -6.41837 -0.69393 -0.20850 0.66906 1.09405 1.30478 1.36591 1.40210 1.51512 1.72309 2.18117 2.32820 2.55240 2.67979 3.25841 3.46749 3.72844 3.74986 3.79773 4.03344 4.08432 4.10494 4.25485 4.32568 4.42213 4.45359 4.48816 4.53200 4.62895 4.80673 4.87387 4.99174 5.08954 5.10109 5.20208 5.26138 5.27141 5.30037 5.37795 5.46784 5.63091 5.85813 6.03874 6.11974 6.30029 6.48151 6.51949 6.62566 6.73664 6.86594 6.95102 8.25727 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.019879 B = 0.002322 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.149950 B =12054.683153 C =12949.498335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.072 4.072 3 C 0.150 3.850 4 C -0.118 4.118 5 C -0.067 4.067 6 C 0.507 3.493 7 O -0.520 6.520 8 O -0.352 6.352 9 C 0.141 3.859 10 C -0.232 4.232 11 C -0.080 4.080 12 C -0.195 4.195 13 C 0.088 3.912 14 C -0.491 4.491 15 H 0.081 0.919 16 C 0.034 3.966 17 N -0.817 5.817 18 Si 0.985 3.015 19 H -0.262 1.262 20 H -0.268 1.268 21 H -0.256 1.256 22 C -0.245 4.245 23 C -0.063 4.063 24 C -0.142 4.142 25 C 0.310 3.690 26 O -0.486 6.486 27 N -0.491 5.491 28 H 0.052 0.948 29 H 0.079 0.921 30 H 0.050 0.950 31 H 0.095 0.905 32 H 0.107 0.893 33 H 0.169 0.831 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.291 0.709 39 H 0.103 0.897 40 H 0.120 0.880 41 H 0.153 0.847 42 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.423 -15.664 -1.122 19.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.110 4.110 3 C 0.012 3.988 4 C -0.138 4.138 5 C -0.075 4.075 6 C 0.352 3.648 7 O -0.410 6.410 8 O -0.268 6.268 9 C 0.069 3.931 10 C -0.233 4.233 11 C -0.098 4.098 12 C -0.214 4.214 13 C 0.085 3.915 14 C -0.519 4.519 15 H 0.099 0.901 16 C -0.182 4.182 17 N -0.442 5.442 18 Si 0.805 3.195 19 H -0.186 1.186 20 H -0.192 1.192 21 H -0.180 1.180 22 C -0.264 4.264 23 C -0.081 4.081 24 C -0.164 4.164 25 C 0.131 3.869 26 O -0.296 6.296 27 N -0.212 5.212 28 H 0.071 0.929 29 H 0.098 0.902 30 H 0.069 0.931 31 H 0.113 0.887 32 H 0.126 0.874 33 H 0.186 0.814 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.101 0.899 39 H 0.121 0.879 40 H 0.138 0.862 41 H 0.171 0.829 42 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -11.293 -16.263 -2.041 19.904 hybrid contribution 0.825 1.612 0.617 1.913 sum -10.467 -14.651 -1.424 18.062 Atomic orbital electron populations 1.21665 0.93434 1.02961 1.01893 1.20703 0.97508 0.87541 1.05255 1.21506 0.92065 0.97124 0.88104 1.22341 0.96532 0.94305 1.00614 1.19482 0.97738 0.95390 0.94938 1.21302 0.79159 0.80682 0.83704 1.90790 1.56362 1.56807 1.37050 1.86728 1.58978 1.28038 1.53091 1.21707 0.90891 0.92355 0.88154 1.18950 1.01681 0.92612 1.10086 1.20786 0.96687 0.95661 0.96678 1.21276 1.02121 0.92115 1.05932 1.18057 0.89732 0.94055 0.89636 1.19942 1.31376 0.94077 1.06536 0.90136 1.26839 0.94653 1.03151 0.93562 1.69873 1.31610 1.39154 1.03589 0.85155 0.78912 0.76652 0.78746 1.18644 1.19226 1.18006 1.21178 1.00343 0.95692 1.09216 1.20718 0.97429 0.92351 0.97622 1.22523 0.98591 1.02261 0.92983 1.19005 0.93380 0.87468 0.87063 1.84771 1.48303 1.58190 1.38357 1.66878 1.25638 1.04091 1.24576 0.92929 0.90167 0.93077 0.88697 0.87438 0.81388 0.90161 0.90859 0.87635 0.87828 0.89859 0.87854 0.86246 0.82923 0.71506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.77 71.98 0.70 -0.92 16 2 C -0.07 -0.87 6.33 29.85 0.19 -0.68 16 3 C 0.15 2.88 6.18 42.50 0.26 3.14 16 4 C -0.12 -2.46 9.27 22.64 0.21 -2.25 16 5 C -0.07 -1.73 5.91 -19.91 -0.12 -1.85 16 6 C 0.51 15.73 7.92 70.43 0.56 16.29 16 7 O -0.52 -17.31 16.23 20.05 0.33 -16.98 16 8 O -0.35 -12.26 9.56 -55.77 -0.53 -12.79 16 9 C 0.14 4.95 5.59 71.24 0.40 5.35 16 10 C -0.23 -9.78 5.54 -19.68 -0.11 -9.89 16 11 C -0.08 -3.67 9.67 22.22 0.21 -3.45 16 12 C -0.20 -10.17 8.70 22.73 0.20 -9.97 16 13 C 0.09 4.67 5.58 -21.29 -0.12 4.55 16 14 C -0.49 -25.85 9.05 23.46 0.21 -25.64 16 15 H 0.08 4.06 7.91 -2.91 -0.02 4.04 16 16 C 0.03 1.68 5.14 85.26 0.44 2.12 16 17 N -0.82 -42.01 10.95 21.83 0.24 -41.77 16 18 Si 0.98 37.14 29.59 68.60 2.03 39.17 16 19 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 20 H -0.27 -9.61 7.11 99.48 0.71 -8.90 16 21 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 22 C -0.24 -11.74 9.80 22.73 0.22 -11.52 16 23 C -0.06 -2.69 9.67 22.22 0.21 -2.47 16 24 C -0.14 -3.61 9.64 22.76 0.22 -3.39 16 25 C 0.31 7.34 7.74 84.78 0.66 8.00 16 26 O -0.49 -10.17 13.56 -90.13 -1.22 -11.39 16 27 N -0.49 -11.21 9.87 -297.16 -2.93 -14.14 16 28 H 0.05 0.75 7.94 -2.39 -0.02 0.74 16 29 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.11 0.82 7.86 -2.39 -0.02 0.80 16 33 H 0.17 2.92 7.62 -2.91 -0.02 2.89 16 34 H 0.08 2.57 8.07 -2.39 -0.02 2.56 16 35 H 0.07 2.46 8.07 -2.39 -0.02 2.44 16 36 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 37 H 0.10 5.64 6.16 -2.91 -0.02 5.62 16 38 H 0.29 13.46 8.30 -92.71 -0.77 12.69 16 39 H 0.10 4.64 8.06 -2.91 -0.02 4.61 16 40 H 0.12 4.30 8.06 -2.91 -0.02 4.28 16 41 H 0.15 4.06 7.71 -2.91 -0.02 4.04 16 42 H 0.42 4.42 9.06 -74.06 -0.67 3.75 16 Total: -1.00 -64.58 369.86 2.65 -61.93 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: 0.39 Total: 28.57 kcal Atomic # 6 Polarization: -36.96 SS G_CDS: 4.35 Total: -32.61 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: -2.69 Total: -55.91 kcal Atomic # 8 Polarization: -39.73 SS G_CDS: -1.43 Total: -41.16 kcal Atomic # 14 Polarization: 37.14 SS G_CDS: 2.03 Total: 39.17 kcal Total: -64.58 2.65 -61.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751605070.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.281 kcal (2) G-P(sol) polarization free energy of solvation -64.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds