Wall clock time and date at job start Tue Mar 31 2020 15:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50697 * 119.99921 * 2 1 4 4 C 1.53008 * 109.47136 * 125.00647 * 3 2 1 5 5 C 1.50697 * 109.47136 * 179.97438 * 4 3 2 6 6 O 1.20755 * 120.00123 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.99810 * 179.97438 * 5 4 3 8 8 O 1.45202 * 109.47275 * 185.19004 * 7 5 4 9 9 C 1.34863 * 117.00284 * 175.36272 * 8 7 5 10 10 O 1.21593 * 119.99850 * 4.22454 * 9 8 7 11 11 C 1.46712 * 120.00113 * 184.22002 * 9 8 7 12 12 C 1.36219 * 125.44717 * 185.26493 * 11 9 8 13 13 C 1.41657 * 107.74231 * 179.97438 * 12 11 9 14 14 C 1.40039 * 133.33985 * 179.97438 * 13 12 11 15 15 C 1.36566 * 119.83310 * 180.02562 * 14 13 12 16 16 C 1.38860 * 120.60190 * 359.97438 * 15 14 13 17 17 C 1.37849 * 120.63916 * 0.28514 * 16 15 14 18 18 C 1.39096 * 119.80910 * 359.47636 * 17 16 15 19 19 N 1.37817 * 133.14694 * 180.18477 * 18 17 16 20 20 C 1.36872 * 125.62526 * 0.28730 * 19 18 17 21 21 H 1.08000 * 120.00417 * 218.36856 * 20 19 18 22 22 C 1.39025 * 119.99978 * 38.36712 * 20 19 18 23 23 N 1.31334 * 119.99991 * 17.67566 * 22 20 19 24 24 Si 1.86799 * 119.99890 * 197.68334 * 22 20 19 25 25 H 1.48501 * 109.47233 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47425 * 120.00038 * 24 22 20 27 27 H 1.48506 * 109.46789 * 239.99554 * 24 22 20 28 28 H 1.07998 * 120.00069 * 179.97438 * 1 2 3 29 29 H 1.08002 * 120.00025 * 359.97438 * 1 2 3 30 30 H 1.08002 * 120.00025 * 180.02562 * 2 1 3 31 31 H 1.09000 * 109.47385 * 5.00689 * 3 2 1 32 32 H 1.08999 * 109.47373 * 245.00676 * 3 2 1 33 33 H 1.09000 * 109.46950 * 59.99776 * 4 3 2 34 34 H 1.08999 * 109.47013 * 300.00249 * 4 3 2 35 35 H 1.08998 * 109.46955 * 65.19069 * 7 5 4 36 36 H 1.09001 * 109.47297 * 305.19187 * 7 5 4 37 37 H 1.07999 * 126.12915 * 0.04369 * 12 11 9 38 38 H 1.08005 * 120.08194 * 359.97438 * 14 13 12 39 39 H 1.08004 * 119.70140 * 180.02562 * 15 14 13 40 40 H 1.07997 * 119.68538 * 180.02562 * 16 15 14 41 41 H 1.07990 * 120.09434 * 179.65482 * 17 16 15 42 42 H 0.97004 * 120.00419 * 184.93818 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7891 2.6378 1.1812 6 8 3.5720 3.4603 0.3242 7 6 4.8139 2.9162 2.2505 8 8 5.3075 4.2741 2.1061 9 6 6.1653 4.7171 3.0477 10 8 6.5513 3.9643 3.9210 11 6 6.6327 6.1075 3.0183 12 6 7.5713 6.6431 3.8476 13 6 7.7351 8.0045 3.4921 14 6 8.5450 9.0356 3.9840 15 6 8.4793 10.2783 3.4216 16 6 7.6158 10.5307 2.3638 17 6 6.8048 9.5335 1.8657 18 6 6.8576 8.2583 2.4189 19 7 6.1921 7.0833 2.1437 20 6 5.2496 6.9109 1.1663 21 1 4.3870 6.2880 1.3516 22 6 5.4026 7.5377 -0.0652 23 7 6.5783 7.9988 -0.4258 24 14 3.9360 7.7241 -1.2069 25 1 2.7348 7.1248 -0.5718 26 1 3.6915 9.1655 -1.4676 27 1 4.2157 7.0297 -2.4895 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3585 2.1316 0.0897 32 1 2.6211 1.4027 -0.9314 33 1 3.7400 0.5065 1.0919 34 1 2.4774 1.2354 2.1130 35 1 5.6429 2.2157 2.1504 36 1 4.3555 2.7987 3.2325 37 1 8.0973 6.1227 4.6344 38 1 9.2194 8.8487 4.8067 39 1 9.1052 11.0719 3.8023 40 1 7.5761 11.5188 1.9298 41 1 6.1325 9.7409 1.0464 42 1 6.6707 8.4989 -1.2518 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761403677.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:43 Heat of formation + Delta-G solvation = -59.994458 kcal Electronic energy + Delta-G solvation = -27027.966988 eV Core-core repulsion = 23131.697957 eV Total energy + Delta-G solvation = -3896.269031 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.30441 -41.28416 -40.32244 -37.66591 -37.41101 -36.32975 -35.46001 -32.52692 -32.30893 -30.89620 -30.33417 -29.38946 -26.79195 -25.75510 -24.51446 -22.77863 -22.10208 -21.11195 -20.71271 -20.65919 -19.78400 -18.85489 -17.86704 -17.75685 -17.27639 -16.86785 -16.60006 -16.49622 -16.26086 -15.92095 -15.70139 -15.23407 -14.85951 -14.68720 -14.56245 -14.46022 -13.92858 -13.81036 -13.64074 -13.57520 -13.43708 -13.01510 -12.99686 -12.89557 -12.37868 -12.20870 -12.06564 -12.04150 -11.94800 -11.89094 -11.79669 -11.50732 -10.96972 -10.78199 -10.45864 -10.20753 -9.02759 -8.73814 -8.36779 -6.39907 -0.10539 0.85840 1.06599 1.14603 1.29504 1.33879 1.35323 1.44468 1.55702 2.08927 2.26256 2.71301 2.82332 2.97856 3.33588 3.81433 3.93423 3.97790 4.05432 4.10690 4.17792 4.20470 4.42218 4.44865 4.45836 4.49402 4.70489 4.71186 4.78881 4.89949 4.94296 5.05268 5.11049 5.16864 5.17847 5.20843 5.31985 5.42801 5.71554 5.73399 5.88382 5.89688 5.94311 6.14643 6.27657 6.44243 6.55597 6.67864 6.97008 7.40209 8.33737 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.014970 B = 0.003620 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.986142 B = 7732.048588 C = 9385.920049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.155 4.155 3 C -0.091 4.091 4 C -0.144 4.144 5 C 0.354 3.646 6 O -0.472 6.472 7 C -0.005 4.005 8 O -0.339 6.339 9 C 0.547 3.453 10 O -0.529 6.529 11 C -0.056 4.056 12 C -0.157 4.157 13 C -0.153 4.153 14 C -0.084 4.084 15 C -0.151 4.151 16 C -0.131 4.131 17 C -0.088 4.088 18 C 0.065 3.935 19 N -0.260 5.260 20 C -0.357 4.357 21 H 0.104 0.896 22 C 0.025 3.975 23 N -0.848 5.848 24 Si 0.984 3.016 25 H -0.266 1.266 26 H -0.256 1.256 27 H -0.274 1.274 28 H 0.114 0.886 29 H 0.089 0.911 30 H 0.131 0.869 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.136 0.864 34 H 0.129 0.871 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.155 0.845 38 H 0.141 0.859 39 H 0.150 0.850 40 H 0.138 0.862 41 H 0.097 0.903 42 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.909 -9.563 2.892 11.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.173 4.173 3 C -0.128 4.128 4 C -0.180 4.180 5 C 0.230 3.770 6 O -0.346 6.346 7 C -0.079 4.079 8 O -0.255 6.255 9 C 0.395 3.605 10 O -0.421 6.421 11 C -0.168 4.168 12 C -0.185 4.185 13 C -0.158 4.158 14 C -0.103 4.103 15 C -0.170 4.170 16 C -0.151 4.151 17 C -0.108 4.108 18 C -0.050 4.050 19 N 0.077 4.923 20 C -0.485 4.485 21 H 0.122 0.878 22 C -0.185 4.185 23 N -0.478 5.478 24 Si 0.806 3.194 25 H -0.190 1.190 26 H -0.180 1.180 27 H -0.200 1.200 28 H 0.132 0.868 29 H 0.107 0.893 30 H 0.148 0.852 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.154 0.846 34 H 0.147 0.853 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.173 0.827 38 H 0.159 0.841 39 H 0.168 0.832 40 H 0.156 0.844 41 H 0.116 0.884 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.091 -9.459 2.175 11.459 hybrid contribution -0.481 -0.141 -0.830 0.969 sum -6.572 -9.600 1.346 11.712 Atomic orbital electron populations 1.24054 0.96139 1.02449 1.00653 1.22959 0.96108 0.97904 1.00293 1.20572 0.97950 0.96264 0.98060 1.22013 0.99458 0.94359 1.02202 1.25172 0.80291 0.89244 0.82312 1.90505 1.60020 1.48327 1.35728 1.23932 0.99653 0.81938 1.02337 1.86955 1.57328 1.32389 1.48829 1.19953 0.75717 0.86574 0.78232 1.90749 1.57711 1.56562 1.37102 1.19567 1.06031 0.87600 1.03620 1.20620 1.00989 0.93826 1.03087 1.18370 1.02639 0.95005 0.99752 1.20501 0.98085 0.91640 1.00073 1.20787 1.01057 0.97140 0.97970 1.21054 0.97194 0.98474 0.98414 1.20214 1.01098 0.90621 0.98873 1.18682 0.99535 0.88372 0.98418 1.40321 1.25944 1.04851 1.21140 1.20030 1.01855 1.34469 0.92113 0.87825 1.26289 0.99548 0.94946 0.97702 1.70077 1.23154 1.30536 1.24079 0.85032 0.77948 0.78966 0.77494 1.18980 1.17971 1.19984 0.86767 0.89269 0.85160 0.92627 0.91635 0.84576 0.85265 0.85971 0.85871 0.82694 0.84137 0.83197 0.84383 0.88445 0.90445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.81 14.32 67.78 0.97 -1.84 16 2 C -0.15 -2.25 9.52 25.65 0.24 -2.01 16 3 C -0.09 -1.77 4.95 29.85 0.15 -1.62 16 4 C -0.14 -2.33 5.62 29.85 0.17 -2.16 16 5 C 0.35 9.89 7.23 29.10 0.21 10.10 16 6 O -0.47 -18.54 16.13 17.36 0.28 -18.26 16 7 C 0.00 -0.14 5.92 71.24 0.42 0.28 16 8 O -0.34 -14.94 7.57 -51.37 -0.39 -15.32 16 9 C 0.55 25.47 7.90 70.04 0.55 26.02 16 10 O -0.53 -23.47 16.62 19.53 0.32 -23.14 16 11 C -0.06 -2.86 6.76 39.88 0.27 -2.59 16 12 C -0.16 -7.38 10.55 22.64 0.24 -7.14 16 13 C -0.15 -7.21 6.16 -21.34 -0.13 -7.34 16 14 C -0.08 -3.20 10.06 22.32 0.22 -2.98 16 15 C -0.15 -5.22 9.97 22.03 0.22 -5.00 16 16 C -0.13 -5.06 10.02 22.33 0.22 -4.84 16 17 C -0.09 -4.23 8.55 22.38 0.19 -4.04 16 18 C 0.07 3.43 6.08 39.07 0.24 3.66 16 19 N -0.26 -14.32 2.83 -331.40 -0.94 -15.26 16 20 C -0.36 -19.91 8.73 84.10 0.73 -19.17 16 21 H 0.10 5.89 6.87 -2.91 -0.02 5.87 16 22 C 0.02 1.32 4.43 84.96 0.38 1.70 16 23 N -0.85 -46.26 10.89 21.67 0.24 -46.02 16 24 Si 0.98 42.66 29.59 68.60 2.03 44.69 16 25 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 26 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 27 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 28 H 0.11 1.23 8.06 -2.91 -0.02 1.21 16 29 H 0.09 1.39 7.84 -2.91 -0.02 1.37 16 30 H 0.13 1.36 8.06 -2.91 -0.02 1.34 16 31 H 0.05 1.28 7.75 -2.39 -0.02 1.26 16 32 H 0.07 1.46 8.10 -2.39 -0.02 1.44 16 33 H 0.14 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.12 3.03 8.14 -2.39 -0.02 3.01 16 36 H 0.12 2.98 8.09 -2.39 -0.02 2.96 16 37 H 0.16 6.34 8.06 -2.91 -0.02 6.32 16 38 H 0.14 4.28 8.06 -2.91 -0.02 4.26 16 39 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 40 H 0.14 4.36 8.06 -2.91 -0.02 4.34 16 41 H 0.10 4.90 6.44 -2.92 -0.02 4.88 16 42 H 0.29 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -73.31 367.91 7.88 -65.43 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: 1.03 Total: 26.85 kcal Atomic # 6 Polarization: -24.27 SS G_CDS: 5.30 Total: -18.97 kcal Atomic # 7 Polarization: -60.58 SS G_CDS: -0.70 Total: -61.28 kcal Atomic # 8 Polarization: -56.94 SS G_CDS: 0.22 Total: -56.72 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -73.31 7.88 -65.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761403677.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.438 kcal (2) G-P(sol) polarization free energy of solvation -73.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds