Wall clock time and date at job start Tue Mar 31 2020 14:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46750 * 2 1 4 4 C 1.38636 * 120.46985 * 258.87101 * 3 2 1 5 5 C 1.38574 * 118.48782 * 179.72618 * 4 3 2 6 6 C 1.38622 * 119.36034 * 0.02562 * 5 4 3 7 7 N 1.31482 * 120.90559 * 0.02562 * 6 5 4 8 8 C 1.32780 * 121.63747 * 359.95708 * 7 6 5 9 9 C 1.48067 * 119.72316 * 180.02562 * 8 7 6 10 10 O 1.21432 * 120.00085 * 185.07149 * 9 8 7 11 11 O 1.34682 * 120.00128 * 5.07792 * 9 8 7 12 12 C 1.45199 * 116.99945 * 179.97438 * 11 9 8 13 13 C 1.50703 * 109.46678 * 179.97438 * 12 11 9 14 14 C 1.38294 * 119.93455 * 269.72659 * 13 12 11 15 15 C 1.38108 * 120.07185 * 179.73193 * 14 13 12 16 16 C 1.38880 * 119.92213 * 0.56582 * 15 14 13 17 17 O 1.35759 * 120.06371 * 179.68522 * 16 15 14 18 18 C 1.34826 * 116.99875 * 185.75901 * 17 16 15 19 19 H 1.08000 * 119.99988 * 354.92326 * 18 17 16 20 20 C 1.38654 * 119.99828 * 174.92251 * 18 17 16 21 21 N 1.31554 * 120.00117 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99744 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47229 * 59.99893 * 22 20 18 24 24 H 1.48508 * 109.46767 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47405 * 299.99690 * 22 20 18 26 26 C 1.38875 * 119.86915 * 359.70572 * 16 15 14 27 27 C 1.38101 * 119.92637 * 0.02562 * 26 16 15 28 28 H 1.08997 * 109.47652 * 59.99884 * 1 2 3 29 29 H 1.09005 * 109.47383 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46976 * 299.99550 * 1 2 3 31 31 H 1.09004 * 109.46976 * 240.00450 * 2 1 3 32 32 H 1.08991 * 109.47243 * 120.00012 * 2 1 3 33 33 H 1.08003 * 120.75152 * 359.75400 * 4 3 2 34 34 H 1.08004 * 120.31989 * 179.97438 * 5 4 3 35 35 H 1.08004 * 119.55277 * 179.97438 * 6 5 4 36 36 H 1.08996 * 109.46986 * 299.99764 * 12 11 9 37 37 H 1.09003 * 109.46961 * 60.00091 * 12 11 9 38 38 H 1.08004 * 119.96840 * 359.97438 * 14 13 12 39 39 H 1.07993 * 120.03470 * 180.27389 * 15 14 13 40 40 H 0.97000 * 119.99630 * 180.02562 * 21 20 18 41 41 H 1.07996 * 120.03980 * 179.97438 * 26 16 15 42 42 H 1.08003 * 119.96179 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.4840 2.0068 -1.1724 5 6 2.9314 3.3175 -1.1265 6 6 2.9152 3.9994 0.0803 7 7 2.4823 3.4193 1.1779 8 6 2.0449 2.1656 1.1772 9 6 1.5664 1.5542 2.4380 10 8 1.2522 0.3815 2.4631 11 8 1.4794 2.2988 3.5569 12 6 1.0016 1.6336 4.7558 13 6 0.9722 2.6167 5.8977 14 6 2.0827 2.7663 6.7083 15 6 2.0607 3.6704 7.7521 16 6 0.9177 4.4211 7.9945 17 8 0.8908 5.3059 9.0238 18 6 -0.2854 5.9140 9.2776 19 1 -1.1296 5.7512 8.6239 20 6 -0.4113 6.7483 10.3778 21 7 0.6168 6.9462 11.1744 22 14 -2.0409 7.5914 10.7290 23 1 -3.0948 6.5656 10.9342 24 1 -1.9141 8.4233 11.9527 25 1 -2.4089 8.4561 9.5792 26 6 -0.1978 4.2644 7.1823 27 6 -0.1675 3.3628 6.1367 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 2.4867 1.4544 -2.1005 34 1 3.2902 3.8029 -2.0222 35 1 3.2636 5.0209 0.1197 36 1 -0.0029 1.2482 4.5817 37 1 1.6694 0.8086 5.0042 38 1 2.9694 2.1784 6.5224 39 1 2.9298 3.7899 8.3820 40 1 0.5285 7.5296 11.9443 41 1 -1.0882 4.8465 7.3685 42 1 -1.0349 3.2402 5.5049 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767067569.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:02 Heat of formation + Delta-G solvation = -48.619706 kcal Electronic energy + Delta-G solvation = -26025.493471 eV Core-core repulsion = 22129.717686 eV Total energy + Delta-G solvation = -3895.775785 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.18007 -39.72908 -38.99331 -37.07428 -36.16983 -34.66387 -32.69017 -32.38888 -30.64922 -30.22440 -30.04048 -26.40078 -25.46145 -24.55953 -24.42434 -22.03647 -21.98261 -21.32052 -20.55627 -18.35909 -18.03938 -17.35145 -16.97518 -16.49777 -16.40929 -15.97098 -15.17056 -14.72181 -14.56255 -14.40809 -14.27772 -13.95505 -13.71573 -13.62688 -13.54320 -13.20193 -12.98805 -12.76105 -12.70937 -12.34725 -12.24183 -11.74650 -11.70760 -11.43916 -11.32234 -10.96208 -10.77792 -10.68148 -10.49137 -10.40185 -10.33173 -10.18838 -9.75580 -9.38985 -9.37501 -8.87622 -8.22140 -7.29422 -6.49460 -4.08020 0.23462 0.84681 1.95413 2.20055 2.29693 2.83669 3.11781 3.13499 3.15568 3.49256 3.93601 3.94082 4.33332 4.35098 4.49324 4.54001 4.69849 4.93384 5.05174 5.06948 5.12407 5.15874 5.19138 5.22801 5.27660 5.42801 5.55387 5.64457 5.66752 5.68863 5.73485 5.80729 5.96790 6.05361 6.16663 6.18960 6.37224 6.53479 6.63774 6.84984 7.00279 7.18765 7.30976 7.38960 7.40039 7.75658 7.81842 7.95412 8.95717 9.64135 10.68032 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.020885 B = 0.002212 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.380126 B =12652.941474 C =12977.243218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.094 4.094 3 C -0.067 4.067 4 C -0.088 4.088 5 C -0.140 4.140 6 C 0.090 3.910 7 N -0.426 5.426 8 C 0.090 3.910 9 C 0.517 3.483 10 O -0.498 6.498 11 O -0.325 6.325 12 C 0.127 3.873 13 C -0.203 4.203 14 C -0.047 4.047 15 C -0.196 4.196 16 C 0.164 3.836 17 O -0.172 6.172 18 C -0.393 4.393 19 H 0.093 0.907 20 C 0.040 3.960 21 N -0.860 5.860 22 Si 0.942 3.058 23 H -0.269 1.269 24 H -0.277 1.277 25 H -0.269 1.269 26 C -0.238 4.238 27 C -0.043 4.043 28 H 0.047 0.953 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.107 0.893 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.166 0.834 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.113 0.887 39 H 0.120 0.880 40 H 0.272 0.728 41 H 0.129 0.871 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.408 -10.334 -24.199 26.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.131 4.131 3 C -0.069 4.069 4 C -0.114 4.114 5 C -0.159 4.159 6 C -0.071 4.071 7 N -0.137 5.137 8 C -0.047 4.047 9 C 0.361 3.639 10 O -0.388 6.388 11 O -0.240 6.240 12 C 0.055 3.945 13 C -0.204 4.204 14 C -0.065 4.065 15 C -0.215 4.215 16 C 0.109 3.891 17 O -0.075 6.075 18 C -0.469 4.469 19 H 0.111 0.889 20 C -0.165 4.165 21 N -0.494 5.494 22 Si 0.767 3.233 23 H -0.194 1.194 24 H -0.202 1.202 25 H -0.194 1.194 26 C -0.257 4.257 27 C -0.062 4.062 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.125 0.875 33 H 0.161 0.839 34 H 0.161 0.839 35 H 0.183 0.817 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.131 0.869 39 H 0.138 0.862 40 H 0.082 0.918 41 H 0.147 0.853 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.503 -10.008 -22.907 25.123 hybrid contribution -0.817 0.076 -0.662 1.054 sum 1.686 -9.933 -23.569 25.632 Atomic orbital electron populations 1.21635 0.93989 1.02208 1.01628 1.20854 0.97038 0.90858 1.04344 1.20951 0.95864 0.97879 0.92246 1.21532 0.96894 0.95100 0.97857 1.22484 0.98337 0.95157 0.99971 1.22941 0.96221 1.00544 0.87383 1.67728 1.06264 1.08973 1.30716 1.20037 1.01953 0.91326 0.91339 1.20790 0.74883 0.84271 0.83984 1.90770 1.45973 1.16474 1.85536 1.86845 1.76158 1.43061 1.17932 1.21784 0.99235 0.93598 0.79910 1.18830 0.96567 1.05788 0.99174 1.20500 0.96255 0.96209 0.93570 1.20185 0.98243 1.00841 1.02227 1.19440 0.93255 0.88270 0.88145 1.83977 1.34668 1.46829 1.41991 1.21320 0.88009 1.26162 1.11442 0.88949 1.25317 0.99360 0.96985 0.94795 1.70029 1.29960 1.35125 1.14282 0.85762 0.80048 0.79149 0.78382 1.19427 1.20223 1.19422 1.21129 1.00385 1.04627 0.99541 1.20609 0.96410 0.93599 0.95571 0.93346 0.91945 0.92256 0.91272 0.87474 0.83891 0.83950 0.81683 0.91090 0.91033 0.86904 0.86211 0.91845 0.85294 0.87369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.43 37.16 0.35 -0.90 16 2 C -0.09 -0.84 5.35 -27.88 -0.15 -0.99 16 3 C -0.07 -0.67 5.19 -104.08 -0.54 -1.21 16 4 C -0.09 -0.64 9.81 -39.31 -0.39 -1.02 16 5 C -0.14 -0.93 10.11 -39.32 -0.40 -1.33 16 6 C 0.09 0.82 11.18 -17.56 -0.20 0.63 16 7 N -0.43 -5.65 10.12 -9.81 -0.10 -5.75 16 8 C 0.09 1.17 6.74 -83.03 -0.56 0.61 16 9 C 0.52 7.60 7.54 34.76 0.26 7.86 16 10 O -0.50 -7.24 11.61 -19.21 -0.22 -7.47 16 11 O -0.32 -5.35 10.03 -40.44 -0.41 -5.76 16 12 C 0.13 1.96 5.60 36.01 0.20 2.17 16 13 C -0.20 -3.66 5.52 -104.58 -0.58 -4.23 16 14 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 15 C -0.20 -4.18 9.99 -39.39 -0.39 -4.57 16 16 C 0.16 3.97 6.65 -39.11 -0.26 3.71 16 17 O -0.17 -4.90 9.76 0.03 0.00 -4.90 16 18 C -0.39 -10.93 9.49 30.89 0.29 -10.64 16 19 H 0.09 2.37 5.21 -52.49 -0.27 2.09 16 20 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 21 N -0.86 -25.04 13.67 55.48 0.76 -24.28 16 22 Si 0.94 20.36 29.55 -169.99 -5.02 15.34 16 23 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 24 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 25 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 26 C -0.24 -5.20 9.17 -39.40 -0.36 -5.56 16 27 C -0.04 -0.82 9.69 -39.61 -0.38 -1.21 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.67 6.54 -51.93 -0.34 0.33 16 31 H 0.07 0.45 8.03 -51.93 -0.42 0.04 16 32 H 0.11 1.15 5.86 -51.93 -0.30 0.85 16 33 H 0.14 0.61 8.06 -52.48 -0.42 0.19 16 34 H 0.14 0.47 8.06 -52.48 -0.42 0.05 16 35 H 0.17 1.08 8.06 -52.48 -0.42 0.66 16 36 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 37 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 38 H 0.11 1.76 8.06 -52.48 -0.42 1.34 16 39 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 40 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 41 H 0.13 2.80 5.64 -52.49 -0.30 2.50 16 42 H 0.11 1.77 8.06 -52.48 -0.42 1.34 16 LS Contribution 363.09 15.07 5.47 5.47 Total: -1.00 -32.57 363.09 -8.09 -40.66 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -4.99 Total: 3.62 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: -3.58 Total: -16.94 kcal Atomic # 7 Polarization: -30.68 SS G_CDS: 0.66 Total: -30.02 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.63 Total: -18.12 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.57 -8.09 -40.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767067569.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.960 kcal (2) G-P(sol) polarization free energy of solvation -32.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds