Wall clock time and date at job start Tue Mar 31 2020 14:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46750 * 2 1 4 4 C 1.38636 * 120.46985 * 258.87101 * 3 2 1 5 5 C 1.38574 * 118.48782 * 179.72618 * 4 3 2 6 6 C 1.38622 * 119.36034 * 0.02562 * 5 4 3 7 7 N 1.31482 * 120.90559 * 0.02562 * 6 5 4 8 8 C 1.32780 * 121.63747 * 359.95708 * 7 6 5 9 9 C 1.48067 * 119.72316 * 180.02562 * 8 7 6 10 10 O 1.21432 * 120.00085 * 185.07149 * 9 8 7 11 11 O 1.34682 * 120.00128 * 5.07792 * 9 8 7 12 12 C 1.45199 * 116.99945 * 179.97438 * 11 9 8 13 13 C 1.50703 * 109.46678 * 179.97438 * 12 11 9 14 14 C 1.38294 * 119.93455 * 269.72659 * 13 12 11 15 15 C 1.38108 * 120.07185 * 179.73193 * 14 13 12 16 16 C 1.38880 * 119.92213 * 0.56582 * 15 14 13 17 17 O 1.35759 * 120.06371 * 179.68522 * 16 15 14 18 18 C 1.34826 * 116.99875 * 185.75901 * 17 16 15 19 19 H 1.08000 * 119.99988 * 354.92326 * 18 17 16 20 20 C 1.38654 * 119.99828 * 174.92251 * 18 17 16 21 21 N 1.31554 * 120.00117 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99744 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47229 * 59.99893 * 22 20 18 24 24 H 1.48508 * 109.46767 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47405 * 299.99690 * 22 20 18 26 26 C 1.38875 * 119.86915 * 359.70572 * 16 15 14 27 27 C 1.38101 * 119.92637 * 0.02562 * 26 16 15 28 28 H 1.08997 * 109.47652 * 59.99884 * 1 2 3 29 29 H 1.09005 * 109.47383 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46976 * 299.99550 * 1 2 3 31 31 H 1.09004 * 109.46976 * 240.00450 * 2 1 3 32 32 H 1.08991 * 109.47243 * 120.00012 * 2 1 3 33 33 H 1.08003 * 120.75152 * 359.75400 * 4 3 2 34 34 H 1.08004 * 120.31989 * 179.97438 * 5 4 3 35 35 H 1.08004 * 119.55277 * 179.97438 * 6 5 4 36 36 H 1.08996 * 109.46986 * 299.99764 * 12 11 9 37 37 H 1.09003 * 109.46961 * 60.00091 * 12 11 9 38 38 H 1.08004 * 119.96840 * 359.97438 * 14 13 12 39 39 H 1.07993 * 120.03470 * 180.27389 * 15 14 13 40 40 H 0.97000 * 119.99630 * 180.02562 * 21 20 18 41 41 H 1.07996 * 120.03980 * 179.97438 * 26 16 15 42 42 H 1.08003 * 119.96179 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.4840 2.0068 -1.1724 5 6 2.9314 3.3175 -1.1265 6 6 2.9152 3.9994 0.0803 7 7 2.4823 3.4193 1.1779 8 6 2.0449 2.1656 1.1772 9 6 1.5664 1.5542 2.4380 10 8 1.2522 0.3815 2.4631 11 8 1.4794 2.2988 3.5569 12 6 1.0016 1.6336 4.7558 13 6 0.9722 2.6167 5.8977 14 6 2.0827 2.7663 6.7083 15 6 2.0607 3.6704 7.7521 16 6 0.9177 4.4211 7.9945 17 8 0.8908 5.3059 9.0238 18 6 -0.2854 5.9140 9.2776 19 1 -1.1296 5.7512 8.6239 20 6 -0.4113 6.7483 10.3778 21 7 0.6168 6.9462 11.1744 22 14 -2.0409 7.5914 10.7290 23 1 -3.0948 6.5656 10.9342 24 1 -1.9141 8.4233 11.9527 25 1 -2.4089 8.4561 9.5792 26 6 -0.1978 4.2644 7.1823 27 6 -0.1675 3.3628 6.1367 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 2.4867 1.4544 -2.1005 34 1 3.2902 3.8029 -2.0222 35 1 3.2636 5.0209 0.1197 36 1 -0.0029 1.2482 4.5817 37 1 1.6694 0.8086 5.0042 38 1 2.9694 2.1784 6.5224 39 1 2.9298 3.7899 8.3820 40 1 0.5285 7.5296 11.9443 41 1 -1.0882 4.8465 7.3685 42 1 -1.0349 3.2402 5.5049 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767067569.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:01 Heat of formation + Delta-G solvation = -67.340388 kcal Electronic energy + Delta-G solvation = -26026.305261 eV Core-core repulsion = 22129.717686 eV Total energy + Delta-G solvation = -3896.587575 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.06984 -40.94660 -40.49488 -38.59345 -37.51837 -35.43417 -34.38055 -33.36542 -32.11917 -31.84799 -30.88591 -27.93753 -26.96865 -25.73128 -25.15057 -23.71377 -22.89184 -22.20148 -22.09248 -19.91809 -19.30605 -18.94381 -18.19159 -17.54652 -17.38117 -16.71020 -16.43611 -16.40158 -16.10191 -15.60029 -15.49360 -15.18125 -15.08763 -14.88466 -14.47288 -14.29072 -14.20267 -14.04527 -13.78899 -13.67985 -13.50834 -13.07362 -12.99703 -12.63577 -12.47388 -12.44605 -12.26890 -12.16578 -12.13924 -11.65300 -11.23568 -11.21855 -10.83956 -10.82444 -10.50836 -10.10364 -9.86291 -9.08027 -8.49688 -6.18372 -0.52298 0.21161 0.40341 0.53354 1.34997 1.35374 1.44250 1.51343 1.70169 2.16558 2.74941 2.77879 3.07942 3.22810 3.43682 3.62111 3.75647 3.82091 3.89080 3.91562 4.00553 4.11758 4.26424 4.29722 4.36178 4.45809 4.48041 4.51211 4.52225 4.71335 4.80898 4.96411 4.97983 5.06022 5.08087 5.10284 5.15215 5.20129 5.36040 5.43636 5.50181 5.63335 5.65730 5.66676 5.98808 6.09439 6.50766 6.89936 6.94361 7.71954 8.72833 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.020885 B = 0.002212 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.380126 B =12652.941474 C =12977.243218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.092 4.092 3 C -0.069 4.069 4 C -0.083 4.083 5 C -0.118 4.118 6 C 0.076 3.924 7 N -0.472 5.472 8 C 0.053 3.947 9 C 0.513 3.487 10 O -0.504 6.504 11 O -0.345 6.345 12 C 0.128 3.872 13 C -0.182 4.182 14 C -0.041 4.041 15 C -0.205 4.205 16 C 0.127 3.873 17 O -0.225 6.225 18 C -0.417 4.417 19 H 0.103 0.897 20 C -0.021 4.021 21 N -0.918 5.918 22 Si 1.019 2.981 23 H -0.257 1.257 24 H -0.271 1.271 25 H -0.257 1.257 26 C -0.244 4.244 27 C -0.043 4.043 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.030 0.970 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.182 0.818 34 H 0.186 0.814 35 H 0.185 0.815 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.148 0.852 39 H 0.120 0.880 40 H 0.274 0.726 41 H 0.125 0.875 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.977 -11.633 -28.582 30.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.129 4.129 3 C -0.072 4.072 4 C -0.108 4.108 5 C -0.137 4.137 6 C -0.085 4.085 7 N -0.183 5.183 8 C -0.081 4.081 9 C 0.358 3.642 10 O -0.393 6.393 11 O -0.261 6.261 12 C 0.056 3.944 13 C -0.183 4.183 14 C -0.059 4.059 15 C -0.224 4.224 16 C 0.075 3.925 17 O -0.131 6.131 18 C -0.493 4.493 19 H 0.121 0.879 20 C -0.219 4.219 21 N -0.555 5.555 22 Si 0.838 3.162 23 H -0.181 1.181 24 H -0.195 1.195 25 H -0.182 1.182 26 C -0.263 4.263 27 C -0.062 4.062 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.049 0.951 31 H 0.118 0.882 32 H 0.103 0.897 33 H 0.200 0.800 34 H 0.203 0.797 35 H 0.202 0.798 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.165 0.835 39 H 0.138 0.862 40 H 0.083 0.917 41 H 0.143 0.857 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.075 -11.362 -27.341 29.680 hybrid contribution -0.536 0.244 0.300 0.661 sum 1.539 -11.118 -27.041 29.278 Atomic orbital electron populations 1.21612 0.94217 1.02514 1.00891 1.20841 0.96779 0.90519 1.04762 1.21162 0.95675 0.98064 0.92260 1.22021 0.95250 0.95478 0.98090 1.22938 0.95775 0.94728 1.00290 1.23448 0.95883 1.01597 0.87581 1.67604 1.07989 1.09585 1.33126 1.19967 1.04672 0.92185 0.91311 1.21240 0.74641 0.84286 0.84034 1.90761 1.46375 1.16575 1.85624 1.86798 1.76787 1.43901 1.18620 1.21748 1.00719 0.92815 0.79147 1.19244 0.95636 1.04290 0.99110 1.20885 0.97714 0.95224 0.92123 1.20435 0.97595 1.01209 1.03183 1.19973 0.95171 0.89016 0.88298 1.83949 1.35432 1.49299 1.44415 1.21823 0.88511 1.26744 1.12248 0.87929 1.26619 1.03592 0.97475 0.94186 1.70175 1.32743 1.37108 1.15484 0.84640 0.74859 0.78128 0.78550 1.18087 1.19529 1.18150 1.21236 0.99622 1.05389 1.00100 1.20946 0.97964 0.92478 0.94763 0.91939 0.91129 0.95053 0.88165 0.89679 0.80046 0.79691 0.79798 0.89646 0.89407 0.83451 0.86158 0.91687 0.85704 0.84280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.43 71.98 0.68 -1.52 16 2 C -0.09 -1.44 5.35 29.85 0.16 -1.28 16 3 C -0.07 -1.22 5.19 -19.51 -0.10 -1.32 16 4 C -0.08 -0.84 9.81 22.45 0.22 -0.62 16 5 C -0.12 -1.07 10.11 22.44 0.23 -0.84 16 6 C 0.08 1.22 11.18 84.84 0.95 2.17 16 7 N -0.47 -12.10 10.12 -184.95 -1.87 -13.97 16 8 C 0.05 1.34 6.74 41.87 0.28 1.62 16 9 C 0.51 14.84 7.54 70.43 0.53 15.37 16 10 O -0.50 -14.35 11.61 20.05 0.23 -14.12 16 11 O -0.35 -11.09 10.03 -55.91 -0.56 -11.65 16 12 C 0.13 3.72 5.60 71.24 0.40 4.12 16 13 C -0.18 -6.30 5.52 -19.83 -0.11 -6.41 16 14 C -0.04 -1.49 9.69 22.25 0.22 -1.28 16 15 C -0.21 -8.99 9.99 22.39 0.22 -8.77 16 16 C 0.13 6.44 6.65 22.58 0.15 6.59 16 17 O -0.23 -13.67 9.76 -22.80 -0.22 -13.89 16 18 C -0.42 -24.43 9.49 67.92 0.64 -23.79 16 19 H 0.10 5.49 5.21 -2.91 -0.02 5.48 16 20 C -0.02 -1.18 5.49 84.83 0.47 -0.71 16 21 N -0.92 -56.39 13.67 21.61 0.30 -56.10 16 22 Si 1.02 42.86 29.55 68.60 2.03 44.88 16 23 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 24 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 25 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 26 C -0.24 -10.94 9.17 22.39 0.21 -10.74 16 27 C -0.04 -1.60 9.69 22.25 0.22 -1.39 16 28 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 30 H 0.03 0.68 6.54 -2.38 -0.02 0.66 16 31 H 0.10 0.92 8.03 -2.38 -0.02 0.91 16 32 H 0.08 1.73 5.86 -2.39 -0.01 1.72 16 33 H 0.18 0.43 8.06 -2.91 -0.02 0.41 16 34 H 0.19 0.09 8.06 -2.91 -0.02 0.07 16 35 H 0.19 1.98 8.06 -2.91 -0.02 1.96 16 36 H 0.09 2.25 8.08 -2.39 -0.02 2.23 16 37 H 0.09 2.28 8.08 -2.39 -0.02 2.26 16 38 H 0.15 4.27 8.06 -2.91 -0.02 4.24 16 39 H 0.12 5.14 8.06 -2.91 -0.02 5.11 16 40 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 41 H 0.13 5.59 5.64 -2.91 -0.02 5.58 16 42 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 Total: -1.00 -77.77 363.09 6.31 -71.46 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: 1.05 Total: 22.17 kcal Atomic # 6 Polarization: -34.15 SS G_CDS: 5.36 Total: -28.80 kcal Atomic # 7 Polarization: -68.49 SS G_CDS: -1.58 Total: -70.07 kcal Atomic # 8 Polarization: -39.10 SS G_CDS: -0.55 Total: -39.65 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -77.77 6.31 -71.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767067569.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.118 kcal (2) G-P(sol) polarization free energy of solvation -77.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds