Wall clock time and date at job start Tue Mar 31 2020 14:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.47152 * 2 1 4 4 C 1.38553 * 119.84825 * 90.00210 * 3 2 1 5 5 C 1.38057 * 120.39148 * 180.02562 * 4 3 2 6 6 C 1.38701 * 120.08769 * 0.03035 * 5 4 3 7 7 O 1.35654 * 120.15339 * 179.97438 * 6 5 4 8 8 C 1.40158 * 119.69734 * 359.97243 * 6 5 4 9 9 C 1.47506 * 120.19121 * 179.97438 * 8 6 5 10 10 O 1.21601 * 120.00013 * 359.97438 * 9 8 6 11 11 N 1.34775 * 120.00288 * 180.27428 * 9 8 6 12 12 C 1.39849 * 120.00340 * 175.20088 * 11 9 8 13 13 C 1.38981 * 120.03649 * 214.86013 * 12 11 9 14 14 C 1.38155 * 120.06086 * 179.74772 * 13 12 11 15 15 C 1.38172 * 120.14326 * 0.55402 * 14 13 12 16 16 C 1.38914 * 120.07085 * 359.70333 * 15 14 13 17 17 O 1.35751 * 120.03019 * 179.97438 * 16 15 14 18 18 C 1.34828 * 116.99971 * 5.37081 * 17 16 15 19 19 H 1.07991 * 120.00339 * 354.96571 * 18 17 16 20 20 C 1.38654 * 119.99535 * 174.96461 * 18 17 16 21 21 N 1.31558 * 120.00475 * 359.97438 * 20 18 17 22 22 Si 1.86809 * 119.99692 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47126 * 89.99796 * 22 20 18 24 24 H 1.48500 * 109.46920 * 209.99741 * 22 20 18 25 25 H 1.48499 * 109.47140 * 329.99861 * 22 20 18 26 26 C 1.38731 * 120.03489 * 35.14345 * 12 11 9 27 27 C 1.37787 * 119.85146 * 270.28224 * 3 2 1 28 28 H 1.09004 * 109.47241 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46564 * 299.99275 * 1 2 3 30 30 H 1.08995 * 109.47374 * 59.99598 * 1 2 3 31 31 H 1.09005 * 109.46564 * 240.00725 * 2 1 3 32 32 H 1.08995 * 109.47374 * 120.00401 * 2 1 3 33 33 H 1.08000 * 119.79991 * 0.02562 * 4 3 2 34 34 H 1.07998 * 119.95662 * 179.97438 * 5 4 3 35 35 H 0.96699 * 114.00225 * 270.02171 * 7 6 5 36 36 H 0.97002 * 119.99511 * 355.20507 * 11 9 8 37 37 H 1.07999 * 119.96846 * 0.02562 * 13 12 11 38 38 H 1.07998 * 119.92851 * 180.27699 * 14 13 12 39 39 H 1.07991 * 119.96714 * 179.71871 * 15 14 13 40 40 H 0.96993 * 120.00111 * 180.02562 * 21 20 18 41 41 H 1.07993 * 120.06991 * 359.94938 * 26 12 11 42 42 H 1.07999 * 120.04573 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2623 2.0709 1.2017 5 6 2.7219 3.3727 1.2148 6 6 2.9564 4.0393 0.0214 7 8 3.4075 5.3186 0.0327 8 6 2.7250 3.3852 -1.1964 9 6 2.9701 4.0841 -2.4721 10 8 3.3736 5.2312 -2.4692 11 7 2.7411 3.4533 -3.6409 12 6 2.8768 4.1465 -4.8480 13 6 2.0331 3.8585 -5.9142 14 6 2.1634 4.5466 -7.1051 15 6 3.1394 5.5146 -7.2440 16 6 3.9893 5.8034 -6.1837 17 8 4.9483 6.7543 -6.3212 18 6 4.9518 7.4583 -7.4711 19 1 4.2660 7.2002 -8.2644 20 6 5.8361 8.5136 -7.6351 21 7 6.6712 8.8284 -6.6685 22 14 5.8405 9.4895 -9.2280 23 1 4.8923 10.6267 -9.1144 24 1 7.2075 10.0087 -9.4865 25 1 5.4252 8.6088 -10.3492 26 6 3.8575 5.1182 -4.9842 27 6 2.2554 2.0694 -1.1950 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 2.0808 1.5563 2.1337 34 1 2.8984 3.8728 2.1556 35 1 2.7053 5.9834 0.0368 36 1 2.4820 2.5185 -3.6449 37 1 1.2721 3.0993 -5.8102 38 1 1.5037 4.3242 -7.9308 39 1 3.2417 6.0476 -8.1777 40 1 7.2895 9.5668 -6.7831 41 1 4.5168 5.3411 -4.1584 42 1 2.0709 1.5601 -2.1294 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769712989.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:04 Heat of formation + Delta-G solvation = -51.178745 kcal Electronic energy + Delta-G solvation = -26421.203034 eV Core-core repulsion = 22525.316280 eV Total energy + Delta-G solvation = -3895.886753 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.75957 -39.42674 -38.34638 -37.31985 -36.36861 -34.13436 -33.66160 -32.21863 -31.66820 -29.41402 -28.92839 -28.28086 -25.30622 -24.35720 -24.00225 -22.52970 -21.72955 -21.00134 -20.04840 -18.72376 -18.06182 -17.51623 -16.92006 -16.29679 -15.79763 -15.31775 -15.10460 -15.03167 -14.91284 -14.33927 -14.24773 -14.13891 -13.95734 -13.76232 -13.48490 -13.42409 -12.81998 -12.66198 -12.44785 -12.41034 -11.92665 -11.71965 -11.52254 -11.47507 -11.33872 -11.18602 -10.98639 -10.81184 -10.71067 -10.42981 -9.74488 -9.62757 -9.32561 -9.13163 -8.78132 -8.74413 -7.66534 -7.15437 -6.38156 -3.97510 0.57012 0.94976 2.10301 2.37313 2.86472 3.15949 3.17049 3.21441 3.23024 3.57688 4.01738 4.05764 4.33058 4.41767 4.51245 4.64684 4.77295 4.95656 5.00345 5.06218 5.14165 5.16097 5.36005 5.44503 5.51296 5.56924 5.60264 5.65349 5.82309 5.84967 5.85355 6.03613 6.12197 6.18762 6.25106 6.42498 6.43977 6.72691 6.91589 7.06789 7.11873 7.37538 7.51485 7.62238 7.71840 7.82660 8.06460 8.38098 9.06419 9.78183 10.79725 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.020685 B = 0.002629 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.304172 B =10648.024056 C =11804.845617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.084 4.084 3 C -0.103 4.103 4 C -0.077 4.077 5 C -0.153 4.153 6 C 0.167 3.833 7 O -0.476 6.476 8 C -0.156 4.156 9 C 0.548 3.452 10 O -0.488 6.488 11 N -0.666 5.666 12 C 0.175 3.825 13 C -0.236 4.236 14 C -0.059 4.059 15 C -0.245 4.245 16 C 0.167 3.833 17 O -0.173 6.173 18 C -0.392 4.392 19 H 0.093 0.907 20 C 0.039 3.961 21 N -0.860 5.860 22 Si 0.942 3.058 23 H -0.273 1.273 24 H -0.278 1.278 25 H -0.268 1.268 26 C -0.186 4.186 27 C -0.070 4.070 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.129 0.871 34 H 0.136 0.864 35 H 0.397 0.603 36 H 0.403 0.597 37 H 0.107 0.893 38 H 0.111 0.889 39 H 0.128 0.872 40 H 0.270 0.730 41 H 0.135 0.865 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.918 -17.037 13.633 25.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.121 4.121 3 C -0.103 4.103 4 C -0.096 4.096 5 C -0.172 4.172 6 C 0.120 3.880 7 O -0.287 6.287 8 C -0.160 4.160 9 C 0.335 3.665 10 O -0.362 6.362 11 N -0.312 5.312 12 C 0.082 3.918 13 C -0.257 4.257 14 C -0.078 4.078 15 C -0.265 4.265 16 C 0.112 3.888 17 O -0.076 6.076 18 C -0.468 4.468 19 H 0.110 0.890 20 C -0.166 4.166 21 N -0.495 5.495 22 Si 0.766 3.234 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.192 1.192 26 C -0.207 4.207 27 C -0.089 4.089 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.147 0.853 34 H 0.154 0.846 35 H 0.255 0.745 36 H 0.239 0.761 37 H 0.126 0.874 38 H 0.130 0.870 39 H 0.145 0.855 40 H 0.080 0.920 41 H 0.152 0.848 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.698 -16.185 13.868 24.313 hybrid contribution -0.612 0.239 -0.838 1.065 sum -12.310 -15.946 13.030 23.992 Atomic orbital electron populations 1.21776 0.94584 1.01863 1.02381 1.20542 0.96265 0.92067 1.03219 1.19811 1.00937 0.96847 0.92701 1.21072 0.96802 0.93891 0.97814 1.21445 1.01929 0.95976 0.97850 1.18517 0.92419 0.86475 0.90559 1.84774 1.35504 1.12435 1.95984 1.20420 1.06106 0.95935 0.93556 1.18133 0.78628 0.86526 0.83187 1.90906 1.41755 1.16806 1.86704 1.43265 1.69282 1.14139 1.04530 1.17159 0.95119 0.95011 0.84500 1.20257 1.03431 1.07304 0.94724 1.20490 0.96649 0.94638 0.95973 1.21181 1.00817 1.04004 1.00527 1.19139 0.87983 0.89345 0.92331 1.83997 1.43065 1.41499 1.39036 1.21343 1.21645 1.12042 0.91784 0.88998 1.25309 0.95499 0.96534 0.99243 1.70057 1.19712 1.27787 1.31907 0.85710 0.78010 0.79585 0.80078 1.19890 1.20290 1.19205 1.20196 1.01605 1.01483 0.97441 1.21102 0.96673 0.92815 0.98274 0.92276 0.92530 0.92375 0.90727 0.90795 0.85278 0.84650 0.74458 0.76149 0.87441 0.87050 0.85453 0.92024 0.84754 0.85326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.89 37.16 0.37 -0.41 16 2 C -0.08 -0.47 6.05 -27.88 -0.17 -0.64 16 3 C -0.10 -0.83 5.13 -104.67 -0.54 -1.37 16 4 C -0.08 -0.61 9.68 -39.53 -0.38 -0.99 16 5 C -0.15 -1.46 9.98 -39.48 -0.39 -1.85 16 6 C 0.17 2.11 6.72 -38.69 -0.26 1.85 16 7 O -0.48 -6.69 11.58 -40.54 -0.47 -7.16 16 8 C -0.16 -2.04 5.89 -104.85 -0.62 -2.66 16 9 C 0.55 9.22 7.61 -12.48 -0.09 9.13 16 10 O -0.49 -10.41 12.60 -16.60 -0.21 -10.62 16 11 N -0.67 -10.27 5.28 -10.83 -0.06 -10.33 16 12 C 0.18 3.38 6.29 -83.74 -0.53 2.85 16 13 C -0.24 -4.11 9.96 -39.34 -0.39 -4.50 16 14 C -0.06 -1.09 10.03 -39.64 -0.40 -1.48 16 15 C -0.25 -5.50 9.17 -39.36 -0.36 -5.86 16 16 C 0.17 4.30 6.64 -39.13 -0.26 4.04 16 17 O -0.17 -5.22 9.76 0.05 0.00 -5.22 16 18 C -0.39 -11.33 9.49 30.89 0.29 -11.04 16 19 H 0.09 2.43 5.20 -52.49 -0.27 2.16 16 20 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 21 N -0.86 -26.20 13.67 55.48 0.76 -25.44 16 22 Si 0.94 21.06 29.55 -169.99 -5.02 16.03 16 23 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 24 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 26 C -0.19 -4.42 8.64 -39.20 -0.34 -4.76 16 27 C -0.07 -0.67 9.18 -39.20 -0.36 -1.03 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 32 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 33 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 34 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.40 4.09 9.06 45.56 0.41 4.51 16 36 H 0.40 4.49 6.87 -40.82 -0.28 4.21 16 37 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 38 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 39 H 0.13 2.82 5.63 -52.49 -0.30 2.53 16 40 H 0.27 7.51 8.31 -40.82 -0.34 7.18 16 41 H 0.13 3.47 6.22 -52.49 -0.33 3.14 16 42 H 0.13 0.95 6.42 -52.49 -0.34 0.61 16 LS Contribution 360.11 15.07 5.43 5.43 Total: -1.00 -36.41 360.11 -8.13 -44.55 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -4.03 Total: 10.50 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -4.53 Total: -17.74 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: 0.70 Total: -35.77 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.68 Total: -23.00 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.41 -8.13 -44.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769712989.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.634 kcal (2) G-P(sol) polarization free energy of solvation -36.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds