Wall clock time and date at job start Tue Mar 31 2020 14:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.47152 * 2 1 4 4 C 1.38553 * 119.84825 * 90.00210 * 3 2 1 5 5 C 1.38057 * 120.39148 * 180.02562 * 4 3 2 6 6 C 1.38701 * 120.08769 * 0.03035 * 5 4 3 7 7 O 1.35654 * 120.15339 * 179.97438 * 6 5 4 8 8 C 1.40158 * 119.69734 * 359.97243 * 6 5 4 9 9 C 1.47506 * 120.19121 * 179.97438 * 8 6 5 10 10 O 1.21601 * 120.00013 * 359.97438 * 9 8 6 11 11 N 1.34775 * 120.00288 * 180.27428 * 9 8 6 12 12 C 1.39849 * 120.00340 * 175.20088 * 11 9 8 13 13 C 1.38981 * 120.03649 * 214.86013 * 12 11 9 14 14 C 1.38155 * 120.06086 * 179.74772 * 13 12 11 15 15 C 1.38172 * 120.14326 * 0.55402 * 14 13 12 16 16 C 1.38914 * 120.07085 * 359.70333 * 15 14 13 17 17 O 1.35751 * 120.03019 * 179.97438 * 16 15 14 18 18 C 1.34828 * 116.99971 * 5.37081 * 17 16 15 19 19 H 1.07991 * 120.00339 * 354.96571 * 18 17 16 20 20 C 1.38654 * 119.99535 * 174.96461 * 18 17 16 21 21 N 1.31558 * 120.00475 * 359.97438 * 20 18 17 22 22 Si 1.86809 * 119.99692 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47126 * 89.99796 * 22 20 18 24 24 H 1.48500 * 109.46920 * 209.99741 * 22 20 18 25 25 H 1.48499 * 109.47140 * 329.99861 * 22 20 18 26 26 C 1.38731 * 120.03489 * 35.14345 * 12 11 9 27 27 C 1.37787 * 119.85146 * 270.28224 * 3 2 1 28 28 H 1.09004 * 109.47241 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46564 * 299.99275 * 1 2 3 30 30 H 1.08995 * 109.47374 * 59.99598 * 1 2 3 31 31 H 1.09005 * 109.46564 * 240.00725 * 2 1 3 32 32 H 1.08995 * 109.47374 * 120.00401 * 2 1 3 33 33 H 1.08000 * 119.79991 * 0.02562 * 4 3 2 34 34 H 1.07998 * 119.95662 * 179.97438 * 5 4 3 35 35 H 0.96699 * 114.00225 * 270.02171 * 7 6 5 36 36 H 0.97002 * 119.99511 * 355.20507 * 11 9 8 37 37 H 1.07999 * 119.96846 * 0.02562 * 13 12 11 38 38 H 1.07998 * 119.92851 * 180.27699 * 14 13 12 39 39 H 1.07991 * 119.96714 * 179.71871 * 15 14 13 40 40 H 0.96993 * 120.00111 * 180.02562 * 21 20 18 41 41 H 1.07993 * 120.06991 * 359.94938 * 26 12 11 42 42 H 1.07999 * 120.04573 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2623 2.0709 1.2017 5 6 2.7219 3.3727 1.2148 6 6 2.9564 4.0393 0.0214 7 8 3.4075 5.3186 0.0327 8 6 2.7250 3.3852 -1.1964 9 6 2.9701 4.0841 -2.4721 10 8 3.3736 5.2312 -2.4692 11 7 2.7411 3.4533 -3.6409 12 6 2.8768 4.1465 -4.8480 13 6 2.0331 3.8585 -5.9142 14 6 2.1634 4.5466 -7.1051 15 6 3.1394 5.5146 -7.2440 16 6 3.9893 5.8034 -6.1837 17 8 4.9483 6.7543 -6.3212 18 6 4.9518 7.4583 -7.4711 19 1 4.2660 7.2002 -8.2644 20 6 5.8361 8.5136 -7.6351 21 7 6.6712 8.8284 -6.6685 22 14 5.8405 9.4895 -9.2280 23 1 4.8923 10.6267 -9.1144 24 1 7.2075 10.0087 -9.4865 25 1 5.4252 8.6088 -10.3492 26 6 3.8575 5.1182 -4.9842 27 6 2.2554 2.0694 -1.1950 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 2.0808 1.5563 2.1337 34 1 2.8984 3.8728 2.1556 35 1 2.7053 5.9834 0.0368 36 1 2.4820 2.5185 -3.6449 37 1 1.2721 3.0993 -5.8102 38 1 1.5037 4.3242 -7.9308 39 1 3.2417 6.0476 -8.1777 40 1 7.2895 9.5668 -6.7831 41 1 4.5168 5.3411 -4.1584 42 1 2.0709 1.5601 -2.1294 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769712989.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:04 Heat of formation + Delta-G solvation = -76.729128 kcal Electronic energy + Delta-G solvation = -26422.310981 eV Core-core repulsion = 22525.316280 eV Total energy + Delta-G solvation = -3896.994701 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.93815 -40.80964 -39.88235 -38.31549 -37.98462 -35.61641 -34.33695 -34.25125 -32.63191 -31.10024 -29.93202 -29.53598 -27.36279 -25.47046 -24.59074 -23.83095 -23.20172 -22.23907 -21.24996 -20.08065 -19.55342 -19.03641 -18.29473 -17.46076 -16.80608 -16.74805 -16.58645 -16.42269 -16.09083 -15.91224 -15.60919 -15.49781 -15.07959 -14.79506 -14.48224 -14.41008 -14.30253 -14.22192 -13.61022 -13.32365 -13.21900 -13.09235 -12.97978 -12.70143 -12.54465 -12.39161 -12.11954 -12.09315 -11.75470 -11.70456 -11.38793 -11.27908 -10.78021 -10.73025 -10.13003 -9.53915 -9.35534 -8.89612 -8.47240 -6.17430 -0.34172 0.20162 0.47719 0.68771 1.33479 1.44444 1.52876 1.76632 1.91705 2.18774 2.62293 2.82380 3.15894 3.21989 3.36922 3.62813 3.75468 3.84169 4.12855 4.23017 4.27326 4.34836 4.40134 4.41967 4.58257 4.60761 4.67025 4.71702 4.77764 4.91409 5.03363 5.06579 5.09915 5.14861 5.22211 5.26864 5.41066 5.43419 5.47513 5.55961 5.61754 5.72341 5.76162 6.02117 6.18105 6.40174 6.74283 6.95947 7.10394 7.79060 8.76817 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.020685 B = 0.002629 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.304172 B =10648.024056 C =11804.845617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.081 4.081 3 C -0.098 4.098 4 C -0.064 4.064 5 C -0.154 4.154 6 C 0.139 3.861 7 O -0.504 6.504 8 C -0.182 4.182 9 C 0.544 3.456 10 O -0.546 6.546 11 N -0.651 5.651 12 C 0.182 3.818 13 C -0.202 4.202 14 C -0.047 4.047 15 C -0.254 4.254 16 C 0.126 3.874 17 O -0.236 6.236 18 C -0.414 4.414 19 H 0.108 0.892 20 C -0.029 4.029 21 N -0.926 5.926 22 Si 1.025 2.975 23 H -0.263 1.263 24 H -0.272 1.272 25 H -0.247 1.247 26 C -0.215 4.215 27 C -0.064 4.064 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.165 0.835 34 H 0.152 0.848 35 H 0.404 0.596 36 H 0.427 0.573 37 H 0.166 0.834 38 H 0.163 0.837 39 H 0.125 0.875 40 H 0.272 0.728 41 H 0.096 0.904 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.548 -21.107 13.290 29.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.118 4.118 3 C -0.098 4.098 4 C -0.082 4.082 5 C -0.172 4.172 6 C 0.093 3.907 7 O -0.316 6.316 8 C -0.186 4.186 9 C 0.334 3.666 10 O -0.424 6.424 11 N -0.299 5.299 12 C 0.088 3.912 13 C -0.223 4.223 14 C -0.065 4.065 15 C -0.274 4.274 16 C 0.075 3.925 17 O -0.143 6.143 18 C -0.490 4.490 19 H 0.125 0.875 20 C -0.226 4.226 21 N -0.564 5.564 22 Si 0.844 3.156 23 H -0.188 1.188 24 H -0.197 1.197 25 H -0.170 1.170 26 C -0.236 4.236 27 C -0.083 4.083 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.182 0.818 34 H 0.170 0.830 35 H 0.264 0.736 36 H 0.267 0.733 37 H 0.184 0.816 38 H 0.181 0.819 39 H 0.143 0.857 40 H 0.081 0.919 41 H 0.114 0.886 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -15.395 -20.363 13.544 28.898 hybrid contribution 0.266 1.147 -0.489 1.275 sum -15.129 -19.215 13.055 27.722 Atomic orbital electron populations 1.21780 0.94115 1.02593 1.02112 1.20617 0.96487 0.90161 1.04578 1.20182 0.99531 0.98036 0.92017 1.21532 0.94342 0.92920 0.99376 1.21636 1.01627 0.96746 0.97203 1.18934 0.93886 0.86088 0.91832 1.84734 1.36899 1.13809 1.96197 1.20242 1.09369 0.97529 0.91441 1.18861 0.77086 0.86043 0.84628 1.90892 1.44355 1.19589 1.87542 1.43154 1.68648 1.15066 1.03005 1.17333 0.93658 0.93635 0.86568 1.20904 1.02200 1.06421 0.92746 1.21057 0.95297 0.92321 0.97842 1.21345 1.01378 1.05300 0.99331 1.19671 0.88965 0.89573 0.94252 1.83965 1.46042 1.43997 1.40295 1.21938 1.22330 1.12590 0.92160 0.87472 1.26765 0.94654 0.97478 1.03680 1.70236 1.21681 1.29355 1.35154 0.84507 0.78374 0.77822 0.74929 1.18815 1.19651 1.16997 1.20181 1.03388 1.03953 0.96112 1.21346 0.95479 0.91218 1.00233 0.91093 0.92563 0.92957 0.89776 0.89187 0.81789 0.83030 0.73621 0.73260 0.81637 0.81934 0.85714 0.91889 0.88571 0.82963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.89 71.98 0.71 -0.22 16 2 C -0.08 -0.54 6.05 29.85 0.18 -0.36 16 3 C -0.10 -1.21 5.13 -19.90 -0.10 -1.32 16 4 C -0.06 -0.78 9.68 22.30 0.22 -0.56 16 5 C -0.15 -2.70 9.98 22.34 0.22 -2.47 16 6 C 0.14 3.59 6.72 22.85 0.15 3.74 16 7 O -0.50 -15.52 11.58 -68.78 -0.80 -16.32 16 8 C -0.18 -4.73 5.89 -20.01 -0.12 -4.85 16 9 C 0.54 18.94 7.61 86.69 0.66 19.60 16 10 O -0.55 -25.40 12.60 16.89 0.21 -25.19 16 11 N -0.65 -19.35 5.28 -306.43 -1.62 -20.96 16 12 C 0.18 6.91 6.29 38.16 0.24 7.15 16 13 C -0.20 -6.15 9.96 22.43 0.22 -5.93 16 14 C -0.05 -1.55 10.03 22.23 0.22 -1.33 16 15 C -0.25 -11.40 9.17 22.42 0.21 -11.20 16 16 C 0.13 6.94 6.64 22.56 0.15 7.09 16 17 O -0.24 -15.57 9.76 -22.73 -0.22 -15.79 16 18 C -0.41 -25.52 9.49 67.92 0.64 -24.87 16 19 H 0.11 5.93 5.20 -2.92 -0.02 5.91 16 20 C -0.03 -1.75 5.49 84.83 0.47 -1.28 16 21 N -0.93 -60.70 13.67 21.61 0.30 -60.40 16 22 Si 1.03 44.74 29.55 68.60 2.03 46.77 16 23 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 24 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 25 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 26 C -0.21 -10.91 8.64 22.52 0.19 -10.71 16 27 C -0.06 -1.07 9.18 22.52 0.21 -0.86 16 28 H 0.07 0.30 8.14 -2.38 -0.02 0.28 16 29 H 0.06 0.36 8.14 -2.38 -0.02 0.34 16 30 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.08 0.46 8.08 -2.38 -0.02 0.44 16 32 H 0.09 0.38 8.08 -2.39 -0.02 0.36 16 33 H 0.16 0.89 8.06 -2.91 -0.02 0.87 16 34 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 35 H 0.40 9.68 9.06 -74.06 -0.67 9.01 16 36 H 0.43 8.13 6.87 -92.71 -0.64 7.50 16 37 H 0.17 3.28 8.06 -2.91 -0.02 3.26 16 38 H 0.16 3.84 8.06 -2.91 -0.02 3.82 16 39 H 0.13 5.57 5.63 -2.92 -0.02 5.56 16 40 H 0.27 16.28 8.31 -92.71 -0.77 15.51 16 41 H 0.10 5.56 6.22 -2.91 -0.02 5.55 16 42 H 0.15 1.65 6.42 -2.91 -0.02 1.63 16 Total: -1.00 -91.96 360.11 4.16 -87.80 By element: Atomic # 1 Polarization: 32.71 SS G_CDS: -0.22 Total: 32.49 kcal Atomic # 6 Polarization: -32.87 SS G_CDS: 4.48 Total: -28.39 kcal Atomic # 7 Polarization: -80.04 SS G_CDS: -1.32 Total: -81.37 kcal Atomic # 8 Polarization: -56.49 SS G_CDS: -0.81 Total: -57.30 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -91.96 4.16 -87.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769712989.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.070 kcal (2) G-P(sol) polarization free energy of solvation -91.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds