Wall clock time and date at job start Tue Mar 31 2020 14:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50697 * 109.46842 * 2 1 4 4 C 1.38621 * 120.75202 * 90.00593 * 3 2 1 5 5 C 1.38590 * 119.35754 * 179.97438 * 4 3 2 6 6 N 1.31496 * 120.90982 * 359.97184 * 5 4 3 7 7 C 1.32755 * 121.63824 * 0.02562 * 6 5 4 8 8 C 1.48076 * 119.72303 * 179.97438 * 7 6 5 9 9 O 1.21433 * 119.99754 * 179.97438 * 8 7 6 10 10 O 1.34674 * 120.00258 * 0.27744 * 8 7 6 11 11 C 1.45197 * 117.00273 * 179.72149 * 10 8 7 12 12 C 1.50696 * 109.47240 * 180.02562 * 11 10 8 13 13 C 1.38304 * 119.92738 * 269.72505 * 12 11 10 14 14 C 1.38104 * 120.06367 * 179.72673 * 13 12 11 15 15 C 1.38883 * 119.93150 * 0.57243 * 14 13 12 16 16 O 1.35752 * 120.06812 * 179.68595 * 15 14 13 17 17 C 1.34825 * 116.99573 * 174.48877 * 16 15 14 18 18 H 1.07997 * 120.00375 * 5.05307 * 17 16 15 19 19 C 1.38653 * 119.99793 * 185.05351 * 17 16 15 20 20 N 1.31557 * 120.00721 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99936 * 359.97438 * 19 17 16 22 22 H 1.48495 * 109.47096 * 90.00246 * 21 19 17 23 23 H 1.48504 * 109.47349 * 209.99982 * 21 19 17 24 24 H 1.48498 * 109.47334 * 330.00049 * 21 19 17 25 25 C 1.38880 * 119.86240 * 359.70321 * 15 14 13 26 26 C 1.38096 * 119.93002 * 0.02562 * 25 15 14 27 27 C 1.38594 * 120.75882 * 270.23348 * 3 2 1 28 28 H 1.09000 * 109.46875 * 59.99964 * 1 2 3 29 29 H 1.08996 * 109.47058 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47137 * 299.99802 * 1 2 3 31 31 H 1.09005 * 109.47043 * 240.00763 * 2 1 3 32 32 H 1.08987 * 109.47191 * 120.00224 * 2 1 3 33 33 H 1.08001 * 120.32583 * 359.97438 * 4 3 2 34 34 H 1.07998 * 119.54261 * 179.97438 * 5 4 3 35 35 H 1.08995 * 109.47247 * 300.00672 * 11 10 8 36 36 H 1.09003 * 109.46624 * 59.99809 * 11 10 8 37 37 H 1.07993 * 119.97181 * 359.97438 * 13 12 11 38 38 H 1.07999 * 120.03117 * 180.27723 * 14 13 12 39 39 H 0.96998 * 120.00985 * 180.02562 * 20 19 17 40 40 H 1.07990 * 120.03595 * 179.97438 * 25 15 14 41 41 H 1.07998 * 119.96960 * 179.97438 * 26 25 15 42 42 H 1.07999 * 120.47402 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2687 2.0890 1.1913 5 6 2.7310 3.3951 1.1576 6 7 2.9478 4.0056 0.0133 7 6 2.7343 3.4017 -1.1496 8 6 2.9921 4.1296 -2.4131 9 8 2.7990 3.5819 -3.4795 10 8 3.4466 5.3969 -2.3795 11 6 3.6830 6.0465 -3.6563 12 6 4.1857 7.4476 -3.4217 13 6 3.2881 8.4951 -3.3227 14 6 3.7453 9.7795 -3.1020 15 6 5.1086 10.0203 -2.9914 16 8 5.5614 11.2827 -2.7809 17 6 6.8847 11.4308 -2.5693 18 1 7.5437 10.5794 -2.6532 19 6 7.3995 12.6765 -2.2440 20 7 8.6906 12.8212 -2.0370 21 14 6.2597 14.1494 -2.0995 22 1 5.7710 14.2619 -0.7018 23 1 6.9980 15.3846 -2.4666 24 1 5.1041 13.9729 -3.0153 25 6 6.0077 8.9671 -3.0970 26 6 5.5439 7.6842 -3.3121 27 6 2.2640 2.0907 -1.1910 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 2.0943 1.5967 2.1366 34 1 2.9157 3.9187 2.0839 35 1 4.4278 5.4830 -4.2183 36 1 2.7524 6.0839 -4.2227 37 1 2.2284 8.3081 -3.4140 38 1 3.0436 10.5964 -3.0204 39 1 9.0507 13.6925 -1.8091 40 1 7.0683 9.1512 -3.0119 41 1 6.2425 6.8648 -3.3947 42 1 2.0867 1.6021 -2.1377 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775092839.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:24 Heat of formation + Delta-G solvation = -54.845786 kcal Electronic energy + Delta-G solvation = -25484.656388 eV Core-core repulsion = 21588.610620 eV Total energy + Delta-G solvation = -3896.045768 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.05566 -39.87668 -39.16251 -37.11382 -36.09695 -35.48170 -32.49335 -31.95994 -30.89820 -30.61714 -30.28254 -26.59482 -25.45510 -24.87425 -24.16608 -22.66135 -22.14780 -20.86812 -20.51741 -18.08027 -17.95629 -17.49561 -17.18873 -16.44406 -16.37910 -16.34063 -15.35595 -14.94139 -14.68338 -14.54932 -14.23854 -14.09229 -13.93722 -13.83909 -13.72334 -13.11272 -12.99076 -12.81242 -12.68833 -12.37808 -12.26257 -12.16809 -12.01077 -11.53257 -11.46307 -11.09362 -10.82167 -10.75997 -10.73163 -10.48704 -10.18326 -10.02259 -9.86053 -9.62648 -9.43432 -8.91670 -8.31345 -7.44594 -6.46188 -4.12788 0.20303 0.80011 1.84894 2.10005 2.25015 2.75962 3.20184 3.24118 3.38141 3.47283 3.88633 4.11054 4.20311 4.26928 4.49645 4.53566 4.58524 4.75843 4.77929 4.79144 4.94305 5.06217 5.06965 5.14765 5.19056 5.27573 5.36382 5.37541 5.46155 5.58048 5.61250 5.68698 5.71235 5.82094 6.08059 6.16271 6.27005 6.37695 6.49532 6.72807 6.95992 7.16066 7.23304 7.36248 7.54126 7.74892 7.76633 7.98234 8.88366 9.49178 10.60940 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.023804 B = 0.002038 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.015183 B =13733.211156 C =14200.964018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.086 4.086 3 C -0.049 4.049 4 C -0.144 4.144 5 C 0.101 3.899 6 N -0.433 5.433 7 C 0.098 3.902 8 C 0.519 3.481 9 O -0.506 6.506 10 O -0.323 6.323 11 C 0.125 3.875 12 C -0.194 4.194 13 C -0.049 4.049 14 C -0.196 4.196 15 C 0.170 3.830 16 O -0.212 6.212 17 C -0.391 4.391 18 H 0.108 0.892 19 C 0.064 3.936 20 N -0.875 5.875 21 Si 0.906 3.094 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.259 1.259 25 C -0.225 4.225 26 C -0.045 4.045 27 C -0.107 4.107 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.142 0.858 34 H 0.167 0.833 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.115 0.885 38 H 0.120 0.880 39 H 0.280 0.720 40 H 0.136 0.864 41 H 0.112 0.888 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.786 -24.049 4.991 28.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.123 4.123 3 C -0.057 4.057 4 C -0.164 4.164 5 C -0.059 4.059 6 N -0.144 5.144 7 C -0.039 4.039 8 C 0.362 3.638 9 O -0.395 6.395 10 O -0.238 6.238 11 C 0.052 3.948 12 C -0.195 4.195 13 C -0.067 4.067 14 C -0.215 4.215 15 C 0.117 3.883 16 O -0.116 6.116 17 C -0.466 4.466 18 H 0.125 0.875 19 C -0.140 4.140 20 N -0.513 5.513 21 Si 0.731 3.269 22 H -0.198 1.198 23 H -0.207 1.207 24 H -0.183 1.183 25 C -0.244 4.244 26 C -0.063 4.063 27 C -0.128 4.128 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.160 0.840 34 H 0.184 0.816 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.133 0.867 38 H 0.138 0.862 39 H 0.091 0.909 40 H 0.154 0.846 41 H 0.130 0.870 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -14.428 -22.894 4.651 27.458 hybrid contribution -0.411 -0.171 0.077 0.451 sum -14.839 -23.065 4.728 27.831 Atomic orbital electron populations 1.21766 0.93953 1.02344 1.02583 1.20603 0.96718 0.91151 1.03855 1.20328 0.96026 0.96949 0.92423 1.22382 0.98830 0.96166 0.98977 1.22951 0.94782 0.92004 0.96150 1.67736 1.11946 1.37043 0.97695 1.20169 1.01047 0.91696 0.90965 1.20796 0.74021 0.81130 0.87858 1.90829 1.49168 1.68625 1.30860 1.86833 1.74683 1.25349 1.36951 1.21814 1.00730 0.90433 0.81799 1.18896 0.93790 0.92063 1.14714 1.20509 0.98152 0.91595 0.96470 1.20185 0.92876 0.97068 1.11348 1.19180 0.92496 0.84580 0.92078 1.83572 1.27230 1.22994 1.77830 1.20798 0.78972 0.98396 1.48449 0.87459 1.24489 0.95958 0.98191 0.95322 1.69641 1.11198 1.25643 1.44787 0.86171 0.80802 0.80385 0.79502 1.19787 1.20714 1.18314 1.21253 1.00930 0.92371 1.09829 1.20674 0.94106 0.96121 0.95421 1.21986 0.97161 0.93686 0.99922 0.92238 0.91780 0.92308 0.90134 0.90121 0.84021 0.81576 0.90897 0.90915 0.86702 0.86199 0.90935 0.84639 0.87024 0.83327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 9.90 37.16 0.37 -0.28 16 2 C -0.09 -0.40 6.11 -27.88 -0.17 -0.57 16 3 C -0.05 -0.36 5.17 -104.35 -0.54 -0.90 16 4 C -0.14 -0.97 9.82 -39.31 -0.39 -1.35 16 5 C 0.10 0.91 11.18 -17.57 -0.20 0.71 16 6 N -0.43 -5.60 10.12 -9.81 -0.10 -5.70 16 7 C 0.10 1.25 6.75 -83.02 -0.56 0.69 16 8 C 0.52 7.72 7.95 34.77 0.28 7.99 16 9 O -0.51 -7.91 16.11 -19.21 -0.31 -8.22 16 10 O -0.32 -5.27 10.02 -40.42 -0.41 -5.67 16 11 C 0.12 1.90 5.60 36.00 0.20 2.10 16 12 C -0.19 -3.38 5.52 -104.57 -0.58 -3.96 16 13 C -0.05 -0.85 9.69 -39.61 -0.38 -1.24 16 14 C -0.20 -3.89 9.99 -39.39 -0.39 -4.28 16 15 C 0.17 3.92 6.65 -39.11 -0.26 3.66 16 16 O -0.21 -5.56 8.59 0.06 0.00 -5.56 16 17 C -0.39 -10.94 9.95 30.89 0.31 -10.63 16 18 H 0.11 3.06 5.44 -52.49 -0.29 2.78 16 19 C 0.06 1.79 5.49 -17.52 -0.10 1.69 16 20 N -0.88 -25.08 13.96 55.48 0.77 -24.30 16 21 Si 0.91 21.50 28.62 -169.99 -4.86 16.64 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.26 -6.16 7.11 56.52 0.40 -5.76 16 25 C -0.22 -4.87 9.17 -39.40 -0.36 -5.23 16 26 C -0.04 -0.84 9.69 -39.61 -0.38 -1.22 16 27 C -0.11 -1.05 9.34 -39.04 -0.36 -1.41 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.08 0.34 8.10 -51.93 -0.42 -0.08 16 32 H 0.08 0.27 8.10 -51.94 -0.42 -0.15 16 33 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 34 H 0.17 1.05 8.06 -52.49 -0.42 0.62 16 35 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 36 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 37 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 38 H 0.12 2.19 8.06 -52.49 -0.42 1.77 16 39 H 0.28 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.14 3.06 5.64 -52.49 -0.30 2.76 16 41 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 42 H 0.15 1.32 7.64 -52.49 -0.40 0.91 16 LS Contribution 370.79 15.07 5.59 5.59 Total: -1.00 -32.08 370.79 -8.02 -40.10 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -5.18 Total: 1.35 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -3.52 Total: -14.23 kcal Atomic # 7 Polarization: -30.67 SS G_CDS: 0.68 Total: -30.00 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.71 Total: -19.45 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.86 Total: 16.64 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.08 -8.02 -40.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775092839.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.745 kcal (2) G-P(sol) polarization free energy of solvation -32.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds