Wall clock time and date at job start Tue Mar 31 2020 14:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50697 * 109.46842 * 2 1 4 4 C 1.38621 * 120.75202 * 90.00593 * 3 2 1 5 5 C 1.38590 * 119.35754 * 179.97438 * 4 3 2 6 6 N 1.31496 * 120.90982 * 359.97184 * 5 4 3 7 7 C 1.32755 * 121.63824 * 0.02562 * 6 5 4 8 8 C 1.48076 * 119.72303 * 179.97438 * 7 6 5 9 9 O 1.21433 * 119.99754 * 179.97438 * 8 7 6 10 10 O 1.34674 * 120.00258 * 0.27744 * 8 7 6 11 11 C 1.45197 * 117.00273 * 179.72149 * 10 8 7 12 12 C 1.50696 * 109.47240 * 180.02562 * 11 10 8 13 13 C 1.38304 * 119.92738 * 269.72505 * 12 11 10 14 14 C 1.38104 * 120.06367 * 179.72673 * 13 12 11 15 15 C 1.38883 * 119.93150 * 0.57243 * 14 13 12 16 16 O 1.35752 * 120.06812 * 179.68595 * 15 14 13 17 17 C 1.34825 * 116.99573 * 174.48877 * 16 15 14 18 18 H 1.07997 * 120.00375 * 5.05307 * 17 16 15 19 19 C 1.38653 * 119.99793 * 185.05351 * 17 16 15 20 20 N 1.31557 * 120.00721 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99936 * 359.97438 * 19 17 16 22 22 H 1.48495 * 109.47096 * 90.00246 * 21 19 17 23 23 H 1.48504 * 109.47349 * 209.99982 * 21 19 17 24 24 H 1.48498 * 109.47334 * 330.00049 * 21 19 17 25 25 C 1.38880 * 119.86240 * 359.70321 * 15 14 13 26 26 C 1.38096 * 119.93002 * 0.02562 * 25 15 14 27 27 C 1.38594 * 120.75882 * 270.23348 * 3 2 1 28 28 H 1.09000 * 109.46875 * 59.99964 * 1 2 3 29 29 H 1.08996 * 109.47058 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47137 * 299.99802 * 1 2 3 31 31 H 1.09005 * 109.47043 * 240.00763 * 2 1 3 32 32 H 1.08987 * 109.47191 * 120.00224 * 2 1 3 33 33 H 1.08001 * 120.32583 * 359.97438 * 4 3 2 34 34 H 1.07998 * 119.54261 * 179.97438 * 5 4 3 35 35 H 1.08995 * 109.47247 * 300.00672 * 11 10 8 36 36 H 1.09003 * 109.46624 * 59.99809 * 11 10 8 37 37 H 1.07993 * 119.97181 * 359.97438 * 13 12 11 38 38 H 1.07999 * 120.03117 * 180.27723 * 14 13 12 39 39 H 0.96998 * 120.00985 * 180.02562 * 20 19 17 40 40 H 1.07990 * 120.03595 * 179.97438 * 25 15 14 41 41 H 1.07998 * 119.96960 * 179.97438 * 26 25 15 42 42 H 1.07999 * 120.47402 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2687 2.0890 1.1913 5 6 2.7310 3.3951 1.1576 6 7 2.9478 4.0056 0.0133 7 6 2.7343 3.4017 -1.1496 8 6 2.9921 4.1296 -2.4131 9 8 2.7990 3.5819 -3.4795 10 8 3.4466 5.3969 -2.3795 11 6 3.6830 6.0465 -3.6563 12 6 4.1857 7.4476 -3.4217 13 6 3.2881 8.4951 -3.3227 14 6 3.7453 9.7795 -3.1020 15 6 5.1086 10.0203 -2.9914 16 8 5.5614 11.2827 -2.7809 17 6 6.8847 11.4308 -2.5693 18 1 7.5437 10.5794 -2.6532 19 6 7.3995 12.6765 -2.2440 20 7 8.6906 12.8212 -2.0370 21 14 6.2597 14.1494 -2.0995 22 1 5.7710 14.2619 -0.7018 23 1 6.9980 15.3846 -2.4666 24 1 5.1041 13.9729 -3.0153 25 6 6.0077 8.9671 -3.0970 26 6 5.5439 7.6842 -3.3121 27 6 2.2640 2.0907 -1.1910 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 2.0943 1.5967 2.1366 34 1 2.9157 3.9187 2.0839 35 1 4.4278 5.4830 -4.2183 36 1 2.7524 6.0839 -4.2227 37 1 2.2284 8.3081 -3.4140 38 1 3.0436 10.5964 -3.0204 39 1 9.0507 13.6925 -1.8091 40 1 7.0683 9.1512 -3.0119 41 1 6.2425 6.8648 -3.3947 42 1 2.0867 1.6021 -2.1377 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775092839.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:23 Heat of formation + Delta-G solvation = -72.434275 kcal Electronic energy + Delta-G solvation = -25485.419082 eV Core-core repulsion = 21588.610620 eV Total energy + Delta-G solvation = -3896.808462 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.96798 -41.05630 -40.65921 -38.68345 -37.42435 -36.02657 -34.51772 -32.80384 -32.14884 -31.87887 -31.33379 -28.13014 -26.85167 -25.76007 -25.14043 -23.78674 -23.34195 -22.17286 -21.68313 -19.88632 -19.19339 -19.02487 -18.27003 -17.57326 -17.31587 -17.01956 -16.66009 -16.39881 -15.90188 -15.73517 -15.67808 -15.26725 -15.22640 -14.70776 -14.56316 -14.43690 -14.37319 -14.19446 -14.03297 -13.74534 -13.34771 -13.15773 -13.01682 -12.70454 -12.53167 -12.37571 -12.36733 -12.03769 -11.94577 -11.78432 -11.75028 -11.32118 -10.93380 -10.66830 -10.59785 -10.33765 -9.89013 -9.17278 -8.52128 -6.25673 -0.58231 0.15173 0.33873 0.50089 1.27841 1.31666 1.35059 1.51755 1.61855 2.27054 2.71181 2.71717 2.95400 3.08023 3.18055 3.57034 3.68473 3.81779 3.86529 3.88057 3.96064 4.06974 4.17348 4.25372 4.35236 4.44138 4.47729 4.50531 4.58417 4.68519 4.69420 4.87157 4.90888 4.97056 5.10769 5.14894 5.18511 5.29584 5.34377 5.37938 5.48891 5.56676 5.62321 5.73604 5.83584 6.13832 6.42459 6.81291 6.84616 7.52371 8.59026 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.023804 B = 0.002038 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.015183 B =13733.211156 C =14200.964018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.083 4.083 3 C -0.047 4.047 4 C -0.124 4.124 5 C 0.090 3.910 6 N -0.474 5.474 7 C 0.065 3.935 8 C 0.519 3.481 9 O -0.521 6.521 10 O -0.340 6.340 11 C 0.124 3.876 12 C -0.173 4.173 13 C -0.042 4.042 14 C -0.192 4.192 15 C 0.134 3.866 16 O -0.238 6.238 17 C -0.403 4.403 18 H 0.082 0.918 19 C 0.011 3.989 20 N -0.919 5.919 21 Si 0.971 3.029 22 H -0.265 1.265 23 H -0.266 1.266 24 H -0.261 1.261 25 C -0.239 4.239 26 C -0.048 4.048 27 C -0.106 4.106 28 H 0.046 0.954 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.182 0.818 34 H 0.189 0.811 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.155 0.845 38 H 0.137 0.863 39 H 0.286 0.714 40 H 0.114 0.886 41 H 0.134 0.866 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.775 -26.686 6.069 32.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.120 4.120 3 C -0.055 4.055 4 C -0.143 4.143 5 C -0.070 4.070 6 N -0.186 5.186 7 C -0.070 4.070 8 C 0.363 3.637 9 O -0.411 6.411 10 O -0.255 6.255 11 C 0.051 3.949 12 C -0.174 4.174 13 C -0.060 4.060 14 C -0.211 4.211 15 C 0.084 3.916 16 O -0.145 6.145 17 C -0.479 4.479 18 H 0.100 0.900 19 C -0.188 4.188 20 N -0.560 5.560 21 Si 0.793 3.207 22 H -0.190 1.190 23 H -0.191 1.191 24 H -0.186 1.186 25 C -0.258 4.258 26 C -0.066 4.066 27 C -0.127 4.127 28 H 0.065 0.935 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.103 0.897 32 H 0.121 0.879 33 H 0.199 0.801 34 H 0.206 0.794 35 H 0.102 0.898 36 H 0.111 0.889 37 H 0.173 0.827 38 H 0.155 0.845 39 H 0.095 0.905 40 H 0.132 0.868 41 H 0.152 0.848 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -17.440 -25.579 5.715 31.481 hybrid contribution 0.341 0.209 -0.231 0.462 sum -17.099 -25.370 5.484 31.082 Atomic orbital electron populations 1.21772 0.93648 1.03096 1.02106 1.20688 0.96793 0.89330 1.05202 1.20709 0.94981 0.98140 0.91690 1.22804 0.96012 0.95053 1.00416 1.23451 0.94525 0.93239 0.95738 1.67623 1.13604 1.38655 0.98714 1.20040 1.04005 0.92740 0.90235 1.21224 0.73243 0.80426 0.88765 1.90804 1.50025 1.68677 1.31589 1.86792 1.75268 1.26469 1.37005 1.21826 1.02073 0.88958 0.82003 1.19269 0.93216 0.93718 1.11203 1.20964 1.00218 0.90295 0.94523 1.20514 0.91613 0.98767 1.10205 1.19721 0.94174 0.84128 0.93599 1.83522 1.25794 1.24632 1.80551 1.20725 0.79914 0.98123 1.49127 0.90008 1.25307 0.97466 1.00858 0.95130 1.69723 1.12730 1.26640 1.46868 0.85207 0.78665 0.77236 0.79553 1.19035 1.19114 1.18566 1.21260 0.99981 0.93715 1.10890 1.20930 0.95508 0.95383 0.94768 1.22115 0.96648 0.92678 1.01255 0.93482 0.90461 0.92053 0.89731 0.87923 0.80052 0.79389 0.89813 0.88886 0.82708 0.84513 0.90454 0.86809 0.84776 0.83049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.90 71.98 0.71 -0.12 16 2 C -0.08 -0.48 6.11 29.85 0.18 -0.30 16 3 C -0.05 -0.56 5.17 -19.69 -0.10 -0.66 16 4 C -0.12 -1.22 9.82 22.45 0.22 -1.00 16 5 C 0.09 1.42 11.18 84.83 0.95 2.37 16 6 N -0.47 -11.81 10.12 -184.94 -1.87 -13.69 16 7 C 0.06 1.61 6.75 41.88 0.28 1.89 16 8 C 0.52 15.06 7.95 70.43 0.56 15.62 16 9 O -0.52 -15.83 16.11 20.05 0.32 -15.50 16 10 O -0.34 -10.65 10.02 -55.83 -0.56 -11.21 16 11 C 0.12 3.48 5.60 71.23 0.40 3.88 16 12 C -0.17 -5.72 5.52 -19.83 -0.11 -5.83 16 13 C -0.04 -1.36 9.69 22.25 0.22 -1.15 16 14 C -0.19 -7.43 9.99 22.39 0.22 -7.20 16 15 C 0.13 6.33 6.65 22.58 0.15 6.48 16 16 O -0.24 -12.99 8.59 -22.71 -0.20 -13.18 16 17 C -0.40 -23.85 9.95 67.92 0.68 -23.17 16 18 H 0.08 5.08 5.44 -2.91 -0.02 5.06 16 19 C 0.01 0.66 5.49 84.83 0.47 1.12 16 20 N -0.92 -54.96 13.96 21.61 0.30 -54.66 16 21 Si 0.97 45.38 28.62 68.60 1.96 47.34 16 22 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 23 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 24 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 25 C -0.24 -10.79 9.17 22.39 0.21 -10.59 16 26 C -0.05 -1.76 9.69 22.25 0.22 -1.55 16 27 C -0.11 -1.93 9.34 22.62 0.21 -1.72 16 28 H 0.05 0.38 8.14 -2.39 -0.02 0.37 16 29 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.08 0.46 8.10 -2.38 -0.02 0.44 16 32 H 0.10 0.20 8.10 -2.39 -0.02 0.18 16 33 H 0.18 0.34 8.06 -2.91 -0.02 0.31 16 34 H 0.19 1.89 8.06 -2.91 -0.02 1.87 16 35 H 0.08 2.19 8.08 -2.39 -0.02 2.17 16 36 H 0.09 2.27 8.08 -2.39 -0.02 2.25 16 37 H 0.16 3.83 8.06 -2.91 -0.02 3.81 16 38 H 0.14 4.78 8.06 -2.91 -0.02 4.75 16 39 H 0.29 15.63 8.31 -92.71 -0.77 14.86 16 40 H 0.11 5.58 5.64 -2.92 -0.02 5.56 16 41 H 0.13 4.28 8.06 -2.91 -0.02 4.25 16 42 H 0.15 2.53 7.64 -2.91 -0.02 2.51 16 Total: -1.00 -73.94 370.79 6.46 -67.48 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 1.04 Total: 15.34 kcal Atomic # 6 Polarization: -27.37 SS G_CDS: 5.46 Total: -21.91 kcal Atomic # 7 Polarization: -66.78 SS G_CDS: -1.57 Total: -68.35 kcal Atomic # 8 Polarization: -39.47 SS G_CDS: -0.43 Total: -39.90 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.96 Total: 47.34 kcal Total: -73.94 6.46 -67.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775092839.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.958 kcal (2) G-P(sol) polarization free energy of solvation -73.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds