Wall clock time and date at job start Tue Mar 31 2020 14:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47257 * 2 1 4 4 C 1.38558 * 119.80122 * 90.00271 * 3 2 1 5 5 C 1.37775 * 120.30198 * 180.02562 * 4 3 2 6 6 C 1.39723 * 119.90890 * 0.23258 * 5 4 3 7 7 C 1.47507 * 120.19559 * 179.74376 * 6 5 4 8 8 O 1.21592 * 120.00044 * 179.97438 * 7 6 5 9 9 N 1.34779 * 119.99675 * 359.97438 * 7 6 5 10 10 C 1.39848 * 119.99780 * 175.47766 * 9 7 6 11 11 C 1.38981 * 120.04095 * 214.86107 * 10 9 7 12 12 C 1.38149 * 120.06456 * 179.74969 * 11 10 9 13 13 C 1.38173 * 120.14232 * 0.54868 * 12 11 10 14 14 C 1.38914 * 120.07275 * 359.70849 * 13 12 11 15 15 O 1.35753 * 120.02889 * 179.97438 * 14 13 12 16 16 C 1.34826 * 117.00139 * 5.37269 * 15 14 13 17 17 H 1.07999 * 120.00335 * 354.96833 * 16 15 14 18 18 C 1.38653 * 119.99975 * 174.95912 * 16 15 14 19 19 N 1.31564 * 120.00064 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00105 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47317 * 60.00397 * 20 18 16 22 22 H 1.48510 * 109.47060 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47109 * 300.00188 * 20 18 16 24 24 C 1.38738 * 120.03739 * 35.14141 * 10 9 7 25 25 C 1.40152 * 119.61204 * 359.49722 * 6 5 4 26 26 O 1.35654 * 120.15382 * 180.25154 * 25 6 5 27 27 C 1.38055 * 119.80603 * 270.02790 * 3 2 1 28 28 H 1.08999 * 109.47598 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47152 * 299.99494 * 1 2 3 30 30 H 1.09001 * 109.47443 * 59.99496 * 1 2 3 31 31 H 1.09001 * 109.46715 * 240.00658 * 2 1 3 32 32 H 1.08997 * 109.47000 * 120.00342 * 2 1 3 33 33 H 1.07997 * 119.84378 * 0.02562 * 4 3 2 34 34 H 1.08002 * 120.04920 * 179.97438 * 5 4 3 35 35 H 0.97002 * 120.00353 * 355.48527 * 9 7 6 36 36 H 1.08000 * 119.96717 * 0.02562 * 11 10 9 37 37 H 1.08007 * 119.92865 * 180.27843 * 12 11 10 38 38 H 1.07999 * 119.96121 * 179.71966 * 13 12 11 39 39 H 0.96991 * 120.00389 * 180.02562 * 19 18 16 40 40 H 1.08003 * 120.06633 * 359.95326 * 24 10 9 41 41 H 0.96696 * 114.00030 * 270.27931 * 26 25 6 42 42 H 1.07998 * 119.96071 * 359.94897 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2620 2.0700 1.2023 5 6 2.7207 3.3691 1.2144 6 6 2.9513 4.0377 0.0094 7 6 3.4371 5.4305 0.0149 8 8 3.6370 6.0088 -1.0358 9 7 3.6593 6.0620 1.1847 10 6 4.2090 7.3479 1.1917 11 6 5.0783 7.7275 2.2075 12 6 5.6255 8.9959 2.2120 13 6 5.3021 9.8948 1.2137 14 6 4.4297 9.5233 0.1985 15 8 4.1120 10.4073 -0.7816 16 6 4.7615 11.5887 -0.7743 17 1 5.4365 11.8290 0.0338 18 6 4.5631 12.4953 -1.8045 19 7 3.7407 12.2028 -2.7889 20 14 5.4635 14.1319 -1.7948 21 1 6.9288 13.8909 -1.8065 22 1 5.0806 14.9147 -2.9974 23 1 5.0965 14.8916 -0.5728 24 6 3.8826 8.2481 0.1877 25 6 2.7233 3.3756 -1.2046 26 8 2.9484 4.0126 -2.3810 27 6 2.2606 2.0679 -1.1979 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 2.0805 1.5553 2.1343 34 1 2.8979 3.8713 2.1539 35 1 3.4382 5.6245 2.0217 36 1 5.3296 7.0286 2.9916 37 1 6.3044 9.2871 3.0001 38 1 5.7281 10.8871 1.2226 39 1 3.6021 12.8367 -3.5097 40 1 3.2044 7.9568 -0.6007 41 1 2.1808 4.4918 -2.7219 42 1 2.0797 1.5551 -2.1310 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786782408.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:13 Heat of formation + Delta-G solvation = -51.456872 kcal Electronic energy + Delta-G solvation = -26269.665928 eV Core-core repulsion = 22373.767114 eV Total energy + Delta-G solvation = -3895.898814 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.74627 -39.44774 -38.36480 -37.20643 -36.36266 -34.45001 -33.76996 -32.20905 -30.63086 -29.97991 -29.25208 -28.19582 -25.34404 -24.89799 -22.99639 -22.62400 -21.71854 -21.25411 -20.20025 -18.51492 -17.98824 -17.65224 -16.97510 -16.34948 -15.69489 -15.29966 -15.18646 -15.02847 -14.85696 -14.43625 -14.20330 -14.12465 -14.01922 -13.68174 -13.51023 -13.39845 -12.90235 -12.77857 -12.45272 -12.14979 -11.92209 -11.73115 -11.70562 -11.47002 -11.34722 -11.20866 -10.96693 -10.79709 -10.69712 -10.45637 -9.74786 -9.62107 -9.19818 -9.13121 -8.85850 -8.77652 -7.66307 -7.15186 -6.38464 -3.97664 0.55150 0.98506 2.10648 2.37655 2.86226 3.15926 3.18243 3.20413 3.22888 3.58723 4.00397 4.02591 4.31820 4.41851 4.57527 4.68792 4.75044 4.88948 4.95679 5.07061 5.10956 5.15855 5.37181 5.41576 5.48971 5.51276 5.64211 5.65733 5.79561 5.85386 5.89728 6.01911 6.12333 6.17644 6.25402 6.41860 6.44229 6.72779 6.92077 7.06647 7.11232 7.37686 7.50992 7.62118 7.72332 7.82812 8.06242 8.39126 9.06247 9.77737 10.79426 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.022461 B = 0.002463 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.323157 B =11364.356914 C =12351.910089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.043 4.043 4 C -0.138 4.138 5 C -0.068 4.068 6 C -0.166 4.166 7 C 0.548 3.452 8 O -0.489 6.489 9 N -0.667 5.667 10 C 0.176 3.824 11 C -0.236 4.236 12 C -0.059 4.059 13 C -0.245 4.245 14 C 0.166 3.834 15 O -0.173 6.173 16 C -0.392 4.392 17 H 0.092 0.908 18 C 0.039 3.961 19 N -0.861 5.861 20 Si 0.942 3.058 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.270 1.270 24 C -0.186 4.186 25 C 0.176 3.824 26 O -0.477 6.477 27 C -0.156 4.156 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.403 0.597 36 H 0.108 0.892 37 H 0.112 0.888 38 H 0.128 0.872 39 H 0.270 0.730 40 H 0.134 0.866 41 H 0.399 0.601 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.293 -22.439 9.280 24.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.126 4.126 3 C -0.044 4.044 4 C -0.156 4.156 5 C -0.087 4.087 6 C -0.169 4.169 7 C 0.336 3.664 8 O -0.363 6.363 9 N -0.313 5.313 10 C 0.083 3.917 11 C -0.257 4.257 12 C -0.077 4.077 13 C -0.265 4.265 14 C 0.112 3.888 15 O -0.076 6.076 16 C -0.468 4.468 17 H 0.109 0.891 18 C -0.166 4.166 19 N -0.496 5.496 20 Si 0.766 3.234 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.195 1.195 24 C -0.207 4.207 25 C 0.129 3.871 26 O -0.288 6.288 27 C -0.174 4.174 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.239 0.761 36 H 0.126 0.874 37 H 0.130 0.870 38 H 0.145 0.855 39 H 0.080 0.920 40 H 0.152 0.848 41 H 0.257 0.743 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.852 -22.168 8.106 24.097 hybrid contribution 0.036 0.822 0.483 0.954 sum -4.816 -21.346 8.589 23.508 Atomic orbital electron populations 1.21756 0.94281 1.01978 1.02498 1.20627 0.96489 0.92136 1.03347 1.19959 0.95752 0.96107 0.92568 1.20936 1.01971 0.94799 0.97867 1.21222 0.96141 0.94647 0.96680 1.20426 1.07469 0.94847 0.94198 1.18136 0.78582 0.85648 0.84057 1.90900 1.48361 1.66243 1.30787 1.43265 1.63313 1.15825 1.08853 1.17161 0.95141 0.82850 0.96578 1.20268 1.04881 0.98396 1.02149 1.20496 0.97493 0.92679 0.97080 1.21181 1.05880 1.01565 0.97885 1.19136 0.91783 0.89374 0.88539 1.83989 1.56518 1.24303 1.42818 1.21294 1.25253 0.90954 1.09298 0.89054 1.25303 0.97114 0.99567 0.94589 1.70044 1.33506 1.36079 1.09948 0.85779 0.79372 0.80088 0.78143 1.19499 1.20313 1.19530 1.20162 1.07176 0.90992 1.02374 1.18490 0.93013 0.90596 0.85002 1.84755 1.40805 1.69037 1.34211 1.21312 1.02550 0.94822 0.98745 0.92166 0.92335 0.92373 0.90637 0.90557 0.85230 0.85195 0.76136 0.87417 0.87034 0.85452 0.91994 0.84850 0.74261 0.84778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.89 37.16 0.37 -0.39 16 2 C -0.09 -0.50 6.05 -27.88 -0.17 -0.67 16 3 C -0.04 -0.35 5.14 -104.57 -0.54 -0.89 16 4 C -0.14 -1.09 9.67 -39.63 -0.38 -1.47 16 5 C -0.07 -0.64 9.53 -39.20 -0.37 -1.02 16 6 C -0.17 -2.16 5.89 -104.85 -0.62 -2.78 16 7 C 0.55 9.23 7.61 -12.48 -0.09 9.14 16 8 O -0.49 -10.45 12.60 -16.59 -0.21 -10.66 16 9 N -0.67 -10.27 5.28 -10.83 -0.06 -10.33 16 10 C 0.18 3.40 6.29 -83.74 -0.53 2.88 16 11 C -0.24 -4.15 9.96 -39.34 -0.39 -4.55 16 12 C -0.06 -1.09 10.03 -39.64 -0.40 -1.49 16 13 C -0.25 -5.51 9.17 -39.35 -0.36 -5.87 16 14 C 0.17 4.28 6.64 -39.14 -0.26 4.02 16 15 O -0.17 -5.20 9.76 0.05 0.00 -5.20 16 16 C -0.39 -11.31 9.49 30.89 0.29 -11.01 16 17 H 0.09 2.41 5.20 -52.49 -0.27 2.14 16 18 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 19 N -0.86 -26.08 13.67 55.48 0.76 -25.32 16 20 Si 0.94 21.03 29.55 -169.99 -5.02 16.01 16 21 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 22 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 23 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 24 C -0.19 -4.39 8.64 -39.20 -0.34 -4.73 16 25 C 0.18 2.23 6.72 -38.69 -0.26 1.97 16 26 O -0.48 -6.72 11.58 -40.54 -0.47 -7.19 16 27 C -0.16 -1.52 9.62 -39.47 -0.38 -1.90 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 32 H 0.08 0.35 8.08 -51.93 -0.42 -0.07 16 33 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 34 H 0.13 0.90 6.41 -52.49 -0.34 0.56 16 35 H 0.40 4.45 6.86 -40.82 -0.28 4.17 16 36 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 37 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 38 H 0.13 2.82 5.63 -52.49 -0.30 2.53 16 39 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.13 3.36 6.22 -52.48 -0.33 3.03 16 41 H 0.40 4.22 9.06 45.56 0.41 4.64 16 42 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 360.10 15.07 5.43 5.43 Total: -1.00 -36.35 360.10 -8.13 -44.49 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -4.03 Total: 10.54 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: -4.53 Total: -17.76 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: 0.70 Total: -35.65 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.68 Total: -23.05 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.35 -8.13 -44.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786782408.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.971 kcal (2) G-P(sol) polarization free energy of solvation -36.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds