Wall clock time and date at job start Tue Mar 31 2020 14:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.47257 * 2 1 4 4 C 1.38558 * 119.80122 * 90.00271 * 3 2 1 5 5 C 1.37775 * 120.30198 * 180.02562 * 4 3 2 6 6 C 1.39723 * 119.90890 * 0.23258 * 5 4 3 7 7 C 1.47507 * 120.19559 * 179.74376 * 6 5 4 8 8 O 1.21592 * 120.00044 * 179.97438 * 7 6 5 9 9 N 1.34779 * 119.99675 * 359.97438 * 7 6 5 10 10 C 1.39848 * 119.99780 * 175.47766 * 9 7 6 11 11 C 1.38981 * 120.04095 * 214.86107 * 10 9 7 12 12 C 1.38149 * 120.06456 * 179.74969 * 11 10 9 13 13 C 1.38173 * 120.14232 * 0.54868 * 12 11 10 14 14 C 1.38914 * 120.07275 * 359.70849 * 13 12 11 15 15 O 1.35753 * 120.02889 * 179.97438 * 14 13 12 16 16 C 1.34826 * 117.00139 * 5.37269 * 15 14 13 17 17 H 1.07999 * 120.00335 * 354.96833 * 16 15 14 18 18 C 1.38653 * 119.99975 * 174.95912 * 16 15 14 19 19 N 1.31564 * 120.00064 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00105 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47317 * 60.00397 * 20 18 16 22 22 H 1.48510 * 109.47060 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47109 * 300.00188 * 20 18 16 24 24 C 1.38738 * 120.03739 * 35.14141 * 10 9 7 25 25 C 1.40152 * 119.61204 * 359.49722 * 6 5 4 26 26 O 1.35654 * 120.15382 * 180.25154 * 25 6 5 27 27 C 1.38055 * 119.80603 * 270.02790 * 3 2 1 28 28 H 1.08999 * 109.47598 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47152 * 299.99494 * 1 2 3 30 30 H 1.09001 * 109.47443 * 59.99496 * 1 2 3 31 31 H 1.09001 * 109.46715 * 240.00658 * 2 1 3 32 32 H 1.08997 * 109.47000 * 120.00342 * 2 1 3 33 33 H 1.07997 * 119.84378 * 0.02562 * 4 3 2 34 34 H 1.08002 * 120.04920 * 179.97438 * 5 4 3 35 35 H 0.97002 * 120.00353 * 355.48527 * 9 7 6 36 36 H 1.08000 * 119.96717 * 0.02562 * 11 10 9 37 37 H 1.08007 * 119.92865 * 180.27843 * 12 11 10 38 38 H 1.07999 * 119.96121 * 179.71966 * 13 12 11 39 39 H 0.96991 * 120.00389 * 180.02562 * 19 18 16 40 40 H 1.08003 * 120.06633 * 359.95326 * 24 10 9 41 41 H 0.96696 * 114.00030 * 270.27931 * 26 25 6 42 42 H 1.07998 * 119.96071 * 359.94897 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2620 2.0700 1.2023 5 6 2.7207 3.3691 1.2144 6 6 2.9513 4.0377 0.0094 7 6 3.4371 5.4305 0.0149 8 8 3.6370 6.0088 -1.0358 9 7 3.6593 6.0620 1.1847 10 6 4.2090 7.3479 1.1917 11 6 5.0783 7.7275 2.2075 12 6 5.6255 8.9959 2.2120 13 6 5.3021 9.8948 1.2137 14 6 4.4297 9.5233 0.1985 15 8 4.1120 10.4073 -0.7816 16 6 4.7615 11.5887 -0.7743 17 1 5.4365 11.8290 0.0338 18 6 4.5631 12.4953 -1.8045 19 7 3.7407 12.2028 -2.7889 20 14 5.4635 14.1319 -1.7948 21 1 6.9288 13.8909 -1.8065 22 1 5.0806 14.9147 -2.9974 23 1 5.0965 14.8916 -0.5728 24 6 3.8826 8.2481 0.1877 25 6 2.7233 3.3756 -1.2046 26 8 2.9484 4.0126 -2.3810 27 6 2.2606 2.0679 -1.1979 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 2.0805 1.5553 2.1343 34 1 2.8979 3.8713 2.1539 35 1 3.4382 5.6245 2.0217 36 1 5.3296 7.0286 2.9916 37 1 6.3044 9.2871 3.0001 38 1 5.7281 10.8871 1.2226 39 1 3.6021 12.8367 -3.5097 40 1 3.2044 7.9568 -0.6007 41 1 2.1808 4.4918 -2.7219 42 1 2.0797 1.5551 -2.1310 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000786782408.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:12 Heat of formation + Delta-G solvation = -76.852785 kcal Electronic energy + Delta-G solvation = -26270.767177 eV Core-core repulsion = 22373.767114 eV Total energy + Delta-G solvation = -3897.000063 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.92214 -40.81284 -39.90361 -38.26685 -37.92844 -35.69518 -34.73226 -34.25424 -31.60325 -31.08156 -30.65062 -29.59540 -27.35278 -25.78899 -24.12268 -23.62940 -23.10523 -22.50790 -21.43570 -20.05143 -19.47841 -18.86443 -18.48220 -17.51556 -16.79017 -16.69220 -16.58544 -16.27437 -16.22772 -15.93507 -15.59771 -15.48036 -15.20024 -14.72278 -14.50141 -14.44812 -14.27248 -14.13537 -13.62823 -13.55208 -13.21030 -12.98907 -12.86496 -12.66864 -12.52481 -12.37397 -12.30376 -12.16620 -11.77070 -11.72232 -11.37430 -11.27298 -10.76692 -10.72855 -9.96183 -9.69110 -9.34932 -8.88897 -8.46942 -6.16833 -0.35353 0.23273 0.48217 0.69228 1.33605 1.45888 1.51499 1.76005 1.93401 2.19182 2.62544 2.82717 3.16146 3.18795 3.38747 3.64806 3.74534 3.86484 4.13088 4.20058 4.26542 4.35217 4.38785 4.40831 4.51975 4.54304 4.67510 4.72863 4.80328 4.89219 5.03590 5.08620 5.10062 5.12333 5.17701 5.25147 5.41453 5.42357 5.43773 5.53440 5.62055 5.72607 5.75903 6.02289 6.18578 6.42215 6.71215 6.96281 7.12364 7.79007 8.76774 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.022461 B = 0.002463 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.323157 B =11364.356914 C =12351.910089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.087 4.087 3 C -0.033 4.033 4 C -0.130 4.130 5 C -0.059 4.059 6 C -0.193 4.193 7 C 0.544 3.456 8 O -0.548 6.548 9 N -0.651 5.651 10 C 0.182 3.818 11 C -0.204 4.204 12 C -0.048 4.048 13 C -0.255 4.255 14 C 0.125 3.875 15 O -0.235 6.235 16 C -0.415 4.415 17 H 0.107 0.893 18 C -0.029 4.029 19 N -0.925 5.925 20 Si 1.025 2.975 21 H -0.257 1.257 22 H -0.273 1.273 23 H -0.252 1.252 24 C -0.213 4.213 25 C 0.149 3.851 26 O -0.503 6.503 27 C -0.160 4.160 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.168 0.832 34 H 0.160 0.840 35 H 0.428 0.572 36 H 0.166 0.834 37 H 0.162 0.838 38 H 0.125 0.875 39 H 0.272 0.728 40 H 0.100 0.900 41 H 0.404 0.596 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.138 -25.236 13.909 29.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.124 4.124 3 C -0.033 4.033 4 C -0.148 4.148 5 C -0.077 4.077 6 C -0.197 4.197 7 C 0.335 3.665 8 O -0.426 6.426 9 N -0.299 5.299 10 C 0.088 3.912 11 C -0.224 4.224 12 C -0.066 4.066 13 C -0.274 4.274 14 C 0.074 3.926 15 O -0.142 6.142 16 C -0.491 4.491 17 H 0.124 0.876 18 C -0.225 4.225 19 N -0.563 5.563 20 Si 0.843 3.157 21 H -0.181 1.181 22 H -0.197 1.197 23 H -0.176 1.176 24 C -0.235 4.235 25 C 0.103 3.897 26 O -0.316 6.316 27 C -0.179 4.179 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.115 0.885 33 H 0.186 0.814 34 H 0.177 0.823 35 H 0.268 0.732 36 H 0.183 0.817 37 H 0.180 0.820 38 H 0.143 0.857 39 H 0.081 0.919 40 H 0.118 0.882 41 H 0.264 0.736 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.706 -25.047 12.831 28.385 hybrid contribution -0.375 1.260 -0.729 1.503 sum -4.081 -23.787 12.102 26.998 Atomic orbital electron populations 1.21758 0.93829 1.02784 1.02123 1.20716 0.96688 0.90341 1.04685 1.20383 0.93691 0.97238 0.92006 1.21381 1.00120 0.94036 0.99213 1.21535 0.94822 0.95238 0.96131 1.20264 1.10410 0.92974 0.96026 1.18859 0.77296 0.87005 0.83388 1.90887 1.50923 1.67872 1.32907 1.43143 1.62596 1.14214 1.09899 1.17338 0.94814 0.83555 0.95534 1.20912 1.01297 0.98688 1.01527 1.21053 0.97076 0.92015 0.96494 1.21347 1.05351 1.02547 0.98190 1.19682 0.93865 0.89781 0.89257 1.83957 1.58976 1.25649 1.45581 1.21886 1.25733 0.91238 1.10221 0.87569 1.26747 0.97968 1.04085 0.93743 1.70222 1.36496 1.38155 1.11447 0.84577 0.78145 0.74147 0.78837 1.18086 1.19746 1.17628 1.20186 1.07999 0.91731 1.03577 1.18883 0.94574 0.91813 0.84467 1.84710 1.41948 1.69578 1.35380 1.21452 1.02457 0.93639 1.00308 0.90828 0.92149 0.93374 0.90139 0.88490 0.81416 0.82261 0.73155 0.81698 0.82025 0.85740 0.91884 0.88221 0.73622 0.83757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.89 71.98 0.71 -0.34 16 2 C -0.09 -0.65 6.05 29.85 0.18 -0.47 16 3 C -0.03 -0.43 5.14 -19.83 -0.10 -0.53 16 4 C -0.13 -1.49 9.67 22.24 0.22 -1.27 16 5 C -0.06 -0.92 9.53 22.52 0.21 -0.70 16 6 C -0.19 -4.97 5.89 -20.01 -0.12 -5.08 16 7 C 0.54 18.83 7.61 86.69 0.66 19.49 16 8 O -0.55 -25.44 12.60 16.91 0.21 -25.23 16 9 N -0.65 -19.11 5.28 -306.43 -1.62 -20.73 16 10 C 0.18 6.88 6.29 38.16 0.24 7.12 16 11 C -0.20 -6.27 9.96 22.43 0.22 -6.05 16 12 C -0.05 -1.61 10.03 22.23 0.22 -1.39 16 13 C -0.25 -11.48 9.17 22.42 0.21 -11.28 16 14 C 0.13 6.85 6.64 22.56 0.15 7.00 16 15 O -0.24 -15.39 9.76 -22.74 -0.22 -15.61 16 16 C -0.41 -25.49 9.49 67.92 0.64 -24.85 16 17 H 0.11 5.87 5.20 -2.91 -0.02 5.85 16 18 C -0.03 -1.71 5.49 84.83 0.47 -1.25 16 19 N -0.92 -60.20 13.67 21.61 0.30 -59.91 16 20 Si 1.02 44.65 29.55 68.60 2.03 46.67 16 21 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 22 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 23 H -0.25 -10.13 7.11 99.48 0.71 -9.42 16 24 C -0.21 -10.73 8.64 22.51 0.19 -10.53 16 25 C 0.15 3.90 6.72 22.85 0.15 4.05 16 26 O -0.50 -15.68 11.58 -68.78 -0.80 -16.48 16 27 C -0.16 -2.99 9.62 22.34 0.21 -2.77 16 28 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.06 0.42 8.14 -2.38 -0.02 0.40 16 30 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.08 0.57 8.08 -2.39 -0.02 0.55 16 32 H 0.10 0.40 8.08 -2.39 -0.02 0.38 16 33 H 0.17 0.72 8.06 -2.91 -0.02 0.70 16 34 H 0.16 1.41 6.41 -2.91 -0.02 1.39 16 35 H 0.43 7.84 6.86 -92.71 -0.64 7.20 16 36 H 0.17 3.34 8.06 -2.91 -0.02 3.32 16 37 H 0.16 3.90 8.06 -2.91 -0.02 3.88 16 38 H 0.12 5.58 5.63 -2.91 -0.02 5.57 16 39 H 0.27 16.20 8.31 -92.71 -0.77 15.43 16 40 H 0.10 5.62 6.22 -2.91 -0.02 5.60 16 41 H 0.40 10.20 9.06 -74.06 -0.67 9.53 16 42 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -91.43 360.10 4.16 -87.27 By element: Atomic # 1 Polarization: 33.08 SS G_CDS: -0.22 Total: 32.86 kcal Atomic # 6 Polarization: -33.33 SS G_CDS: 4.48 Total: -28.86 kcal Atomic # 7 Polarization: -79.31 SS G_CDS: -1.32 Total: -80.64 kcal Atomic # 8 Polarization: -56.51 SS G_CDS: -0.80 Total: -57.31 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -91.43 4.16 -87.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786782408.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.417 kcal (2) G-P(sol) polarization free energy of solvation -91.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds