Wall clock time and date at job start Tue Mar 31 2020 15:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47156 * 2 1 4 4 H 1.09006 * 109.47198 * 54.99924 * 3 2 1 5 5 C 1.50700 * 109.47103 * 174.99631 * 3 2 1 6 6 H 1.08005 * 120.00129 * 120.00067 * 5 3 2 7 7 C 1.37878 * 120.00175 * 300.00281 * 5 3 2 8 8 N 1.31515 * 119.99755 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00142 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47563 * 89.99824 * 9 7 5 11 11 H 1.48507 * 109.47018 * 209.99699 * 9 7 5 12 12 H 1.48498 * 109.47227 * 329.99469 * 9 7 5 13 13 O 1.45197 * 109.47203 * 294.99643 * 3 2 1 14 14 C 1.34759 * 117.00024 * 89.99977 * 13 3 2 15 15 O 1.21509 * 119.99946 * 0.02562 * 14 13 3 16 16 C 1.47394 * 119.99796 * 179.97438 * 14 13 3 17 17 C 1.39764 * 120.19976 * 0.02562 * 16 14 13 18 18 C 1.37769 * 119.90327 * 179.97438 * 17 16 14 19 19 C 1.38577 * 120.31297 * 0.02562 * 18 17 16 20 20 C 1.38048 * 120.40437 * 359.97438 * 19 18 17 21 21 C 1.38733 * 120.08701 * 359.72420 * 20 19 18 22 22 O 1.35620 * 120.15537 * 180.27938 * 21 20 19 23 23 C 1.35899 * 117.99820 * 267.24019 * 22 21 20 24 24 C 1.39171 * 120.47775 * 185.40697 * 23 22 21 25 25 C 1.38532 * 118.37044 * 179.78382 * 24 23 22 26 26 C 1.38261 * 119.22334 * 0.47224 * 25 24 23 27 27 N 1.31852 * 120.88911 * 359.77128 * 26 25 24 28 28 C 1.31834 * 121.78760 * 359.97438 * 27 26 25 29 29 H 1.09004 * 109.47161 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46788 * 60.00454 * 1 2 3 31 31 H 1.08995 * 109.47672 * 300.00318 * 1 2 3 32 32 H 1.09007 * 109.46585 * 119.99994 * 2 1 3 33 33 H 1.09003 * 109.47122 * 239.99451 * 2 1 3 34 34 H 0.96999 * 119.99923 * 180.02562 * 8 7 5 35 35 H 1.07996 * 120.05111 * 359.97438 * 17 16 14 36 36 H 1.07994 * 119.84501 * 179.97438 * 18 17 16 37 37 H 1.08000 * 119.79927 * 179.97438 * 19 18 17 38 38 H 1.07998 * 119.95272 * 180.02562 * 20 19 18 39 39 H 1.07997 * 120.80692 * 0.02562 * 24 23 22 40 40 H 1.07991 * 120.38394 * 180.22024 * 25 24 23 41 41 H 1.08002 * 119.55440 * 179.79093 * 26 25 24 42 42 H 1.08000 * 119.65739 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1432 0.8783 1.2281 8 7 3.4061 0.3373 2.1734 9 14 6.0049 0.8811 1.3820 10 1 6.4416 2.1140 2.0852 11 1 6.4394 -0.3100 2.1552 12 1 6.6136 0.8414 0.0281 13 8 1.6560 2.0916 -1.2407 14 6 0.4682 2.7278 -1.2561 15 8 -0.2274 2.7402 -0.2599 16 6 0.0132 3.4097 -2.4811 17 6 0.8102 3.3985 -3.6292 18 6 0.3788 4.0373 -4.7710 19 6 -0.8424 4.6922 -4.7871 20 6 -1.6398 4.7113 -3.6604 21 6 -1.2246 4.0681 -2.5035 22 8 -2.0094 4.0813 -1.3975 23 6 -1.8040 5.0635 -0.4811 24 6 -2.5013 5.0621 0.7234 25 6 -2.2546 6.0819 1.6280 26 6 -1.3384 7.0652 1.3033 27 7 -0.6981 7.0399 0.1510 28 6 -0.9002 6.0848 -0.7350 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5139 0.8901 33 1 1.8934 -0.5139 -0.8900 34 1 3.8291 -0.0605 2.9503 35 1 1.7628 2.8898 -3.6213 36 1 0.9955 4.0284 -5.6575 37 1 -1.1723 5.1906 -5.6867 38 1 -2.5904 5.2235 -3.6812 39 1 -3.2144 4.2830 0.9488 40 1 -2.7748 6.1107 2.5739 41 1 -1.1444 7.8646 2.0032 42 1 -0.3570 6.0981 -1.6684 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787088524.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:44 Heat of formation + Delta-G solvation = -50.045430 kcal Electronic energy + Delta-G solvation = -28046.158362 eV Core-core repulsion = 24150.320753 eV Total energy + Delta-G solvation = -3895.837609 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.26028 -39.74703 -38.87039 -37.62940 -35.69414 -33.53272 -32.38804 -31.68288 -31.11670 -30.85895 -29.71958 -27.31517 -24.66728 -23.80276 -23.47939 -23.12680 -22.14078 -20.89083 -19.60465 -18.74719 -17.59258 -17.14824 -16.71729 -16.60938 -16.09225 -15.85382 -15.23493 -15.19050 -14.66856 -14.40445 -14.23966 -14.05438 -13.92619 -13.12461 -13.04536 -12.84742 -12.70045 -12.55355 -12.37827 -12.12130 -11.84094 -11.49470 -11.35615 -11.31331 -11.19267 -10.95365 -10.67356 -10.29213 -9.80429 -9.69472 -9.63469 -9.56111 -9.38663 -9.18751 -8.89723 -8.81701 -8.46991 -8.43201 -6.19771 -4.26936 0.59070 0.99649 1.16674 1.36895 2.88825 3.14639 3.23737 3.28826 3.32092 3.52990 3.80890 3.87503 4.31298 4.53698 4.65488 4.72646 4.77373 4.90967 4.96294 5.08207 5.12186 5.13520 5.20903 5.44468 5.55975 5.62684 5.79578 6.00109 6.05557 6.12355 6.14918 6.21882 6.24595 6.31160 6.45454 6.47160 6.66017 6.86345 6.95651 7.16248 7.21826 7.45182 7.59709 7.71958 7.91580 7.99147 8.13592 8.59034 8.85712 9.38191 10.87049 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011210 B = 0.004391 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.265581 B = 6374.639765 C = 7413.477660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.224 3.776 4 H 0.046 0.954 5 C -0.521 4.521 6 H 0.068 0.932 7 C 0.064 3.936 8 N -0.887 5.887 9 Si 0.910 3.090 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.350 6.350 14 C 0.490 3.510 15 O -0.493 6.493 16 C -0.122 4.122 17 C -0.051 4.051 18 C -0.129 4.129 19 C -0.082 4.082 20 C -0.140 4.140 21 C 0.130 3.870 22 O -0.238 6.238 23 C 0.102 3.898 24 C -0.095 4.095 25 C -0.134 4.134 26 C 0.057 3.943 27 N -0.451 5.451 28 C 0.026 3.974 29 H 0.032 0.968 30 H 0.031 0.969 31 H 0.052 0.948 32 H 0.109 0.891 33 H 0.041 0.959 34 H 0.266 0.734 35 H 0.150 0.850 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.138 0.862 39 H 0.143 0.857 40 H 0.141 0.859 41 H 0.157 0.843 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.198 9.713 -9.906 17.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.172 3.828 4 H 0.064 0.936 5 C -0.559 4.559 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.737 3.263 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.196 1.196 13 O -0.267 6.267 14 C 0.333 3.667 15 O -0.383 6.383 16 C -0.123 4.123 17 C -0.069 4.069 18 C -0.147 4.147 19 C -0.100 4.100 20 C -0.159 4.159 21 C 0.087 3.913 22 O -0.148 6.148 23 C 0.057 3.943 24 C -0.121 4.121 25 C -0.153 4.153 26 C -0.101 4.101 27 N -0.160 5.160 28 C -0.132 4.132 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.127 0.873 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.168 0.832 36 H 0.154 0.846 37 H 0.153 0.847 38 H 0.156 0.844 39 H 0.160 0.840 40 H 0.159 0.841 41 H 0.174 0.826 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -10.893 10.073 -9.566 17.653 hybrid contribution 0.404 -0.900 0.417 1.071 sum -10.489 9.173 -9.149 16.670 Atomic orbital electron populations 1.21848 0.98301 0.98976 1.00773 1.22020 0.92666 0.99274 1.03349 1.20688 0.95007 0.88703 0.78389 0.93576 1.21023 0.89565 1.39024 1.06322 0.91347 1.24875 0.99229 0.94717 0.95043 1.69890 1.35392 1.37797 1.09419 0.86292 0.83881 0.77720 0.78375 1.20389 1.20917 1.19570 1.86523 1.33359 1.62486 1.44324 1.20647 0.81444 0.77558 0.87018 1.90820 1.55077 1.57692 1.34711 1.19935 0.94654 1.02844 0.94905 1.21596 0.99347 0.95297 0.90690 1.21283 0.96706 0.98140 0.98540 1.21241 0.93811 0.97361 0.97610 1.21302 1.01486 1.00413 0.92664 1.18677 0.89066 0.96953 0.86608 1.84264 1.54459 1.47712 1.28348 1.20028 0.96304 0.87830 0.90116 1.20885 1.00908 0.99656 0.90669 1.21983 0.99078 0.94482 0.99797 1.22636 0.94331 0.98881 0.94203 1.67496 1.22239 1.23868 1.02398 1.22847 0.98414 0.91812 1.00114 0.94845 0.94963 0.92848 0.87310 0.93979 0.92377 0.83245 0.84622 0.84714 0.84442 0.83958 0.84084 0.82608 0.83103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 8.56 37.16 0.32 -2.86 16 2 C -0.14 -3.38 5.49 -26.73 -0.15 -3.53 16 3 C 0.22 5.99 2.25 -27.89 -0.06 5.93 16 4 H 0.05 1.38 7.16 -51.93 -0.37 1.01 16 5 C -0.52 -14.58 8.90 -34.44 -0.31 -14.89 16 6 H 0.07 1.88 7.81 -52.48 -0.41 1.47 16 7 C 0.06 1.75 5.29 -17.82 -0.09 1.65 16 8 N -0.89 -25.10 11.29 55.43 0.63 -24.48 16 9 Si 0.91 21.07 29.54 -169.99 -5.02 16.05 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 13 O -0.35 -8.35 9.06 -40.65 -0.37 -8.72 16 14 C 0.49 10.61 6.34 34.46 0.22 10.83 16 15 O -0.49 -11.59 11.37 -26.59 -0.30 -11.89 16 16 C -0.12 -2.07 5.88 -104.85 -0.62 -2.68 16 17 C -0.05 -0.70 9.61 -39.18 -0.38 -1.08 16 18 C -0.13 -1.30 10.02 -39.63 -0.40 -1.69 16 19 C -0.08 -0.75 10.03 -39.53 -0.40 -1.15 16 20 C -0.14 -1.57 9.81 -39.47 -0.39 -1.96 16 21 C 0.13 1.97 4.02 -38.65 -0.16 1.82 16 22 O -0.24 -3.99 8.59 -24.63 -0.21 -4.20 16 23 C 0.10 1.67 5.41 -39.05 -0.21 1.46 16 24 C -0.09 -1.37 10.13 -39.13 -0.40 -1.77 16 25 C -0.13 -1.67 10.11 -39.46 -0.40 -2.07 16 26 C 0.06 0.77 11.18 -17.53 -0.20 0.57 16 27 N -0.45 -7.26 10.35 -13.12 -0.14 -7.40 16 28 C 0.03 0.43 10.37 -17.37 -0.18 0.25 16 29 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.03 0.71 6.06 -51.93 -0.31 0.39 16 31 H 0.05 1.26 7.79 -51.93 -0.40 0.85 16 32 H 0.11 2.95 5.95 -51.93 -0.31 2.64 16 33 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.15 2.05 7.61 -52.49 -0.40 1.65 16 36 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 38 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 39 H 0.14 1.84 8.06 -52.49 -0.42 1.42 16 40 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 41 H 0.16 1.58 8.06 -52.49 -0.42 1.16 16 42 H 0.15 2.33 6.71 -52.49 -0.35 1.98 16 LS Contribution 356.96 15.07 5.38 5.38 Total: -1.00 -32.61 356.96 -8.90 -41.51 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -5.08 Total: 4.94 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -3.79 Total: -11.19 kcal Atomic # 7 Polarization: -32.37 SS G_CDS: 0.49 Total: -31.88 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.88 Total: -24.82 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.61 -8.90 -41.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787088524.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.537 kcal (2) G-P(sol) polarization free energy of solvation -32.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds